RNA–Protein interactions for RNA: ENST00000547672.5

PTCH1-215, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 881 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-215ENST00000547672 EAF2Q96CJ1 260 aaPredicted RBP16.34■□□□□ 0.21
PTCH1-215ENST00000547672 USP26Q9BXU7 913 aa16.34■□□□□ 0.21
PTCH1-215ENST00000547672 NYXQ9GZU5 481 aa16.34■□□□□ 0.21
PTCH1-215ENST00000547672 ADRA2BP18089 450 aa16.33■□□□□ 0.2
PTCH1-215ENST00000547672 LRRFIP1Q32MZ4 808 aaKnown RBP16.33■□□□□ 0.2
PTCH1-215ENST00000547672 LINC00116Q8NCU8 138 aa16.33■□□□□ 0.2
PTCH1-215ENST00000547672 TTLL11Q8NHH1 800 aa16.33■□□□□ 0.2
PTCH1-215ENST00000547672 ESYT1Q9BSJ8 1104 aa16.33■□□□□ 0.2
PTCH1-215ENST00000547672 NARFQ9UHQ1 456 aa16.33■□□□□ 0.2
PTCH1-215ENST00000547672 NIP7Q9Y221 180 aaKnown RBP eCLIP16.33■□□□□ 0.2
PTCH1-215ENST00000547672 COL5A3P25940 1745 aaPredicted RBP16.33■□□□□ 0.2
PTCH1-215ENST00000547672 BTAF1O14981 1849 aa16.32■□□□□ 0.2
PTCH1-215ENST00000547672 CCDC152Q4G0S7 254 aa16.32■□□□□ 0.2
PTCH1-215ENST00000547672 CCDC8Q9H0W5 538 aaPredicted RBP16.32■□□□□ 0.2
PTCH1-215ENST00000547672 DIAPH3Q9NSV4 1193 aa16.32■□□□□ 0.2
PTCH1-215ENST00000547672 RABEP1Q15276 862 aa16.31■□□□□ 0.2
PTCH1-215ENST00000547672 ATG9AQ7Z3C6 839 aa16.31■□□□□ 0.2
PTCH1-215ENST00000547672 HSCBQ8IWL3 235 aa16.31■□□□□ 0.2
PTCH1-215ENST00000547672 KLHDC4Q8TBB5 520 aa16.31■□□□□ 0.2
PTCH1-215ENST00000547672 SNX21Q969T3 373 aa16.31■□□□□ 0.2
PTCH1-215ENST00000547672 MSH5O43196 834 aa16.3■□□□□ 0.2
PTCH1-215ENST00000547672 ITGA6P23229 1130 aa16.3■□□□□ 0.2
PTCH1-215ENST00000547672 ANAPC15P60006 121 aa16.3■□□□□ 0.2
PTCH1-215ENST00000547672 CCDC158Q5M9N0 1113 aa16.3■□□□□ 0.2
PTCH1-215ENST00000547672 TRAPPC3LQ5T215 181 aa16.3■□□□□ 0.2
PTCH1-215ENST00000547672 SUSD4Q5VX71 490 aa16.3■□□□□ 0.2
PTCH1-215ENST00000547672 LDHAL6AQ6ZMR3 332 aa16.3■□□□□ 0.2
PTCH1-215ENST00000547672 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.3■□□□□ 0.2
PTCH1-215ENST00000547672 SETDB2Q96T68 719 aa16.3■□□□□ 0.2
PTCH1-215ENST00000547672 RTL9Q8NET4 1388 aa16.29■□□□□ 0.2
PTCH1-215ENST00000547672 GTF2E1P29083 439 aaPredicted RBP16.29■□□□□ 0.2
PTCH1-215ENST00000547672 GORABQ5T7V8 394 aa16.29■□□□□ 0.2
PTCH1-215ENST00000547672 TSHZ3Q63HK5 1081 aa16.29■□□□□ 0.2
PTCH1-215ENST00000547672 NEUROD6Q96NK8 337 aa16.29■□□□□ 0.2
PTCH1-215ENST00000547672 CNNM1Q9NRU3 951 aa16.29■□□□□ 0.2
PTCH1-215ENST00000547672 SBF2Q86WG5 1849 aa16.29■□□□□ 0.2
PTCH1-215ENST00000547672 UBN2Q6ZU65 1347 aa16.28■□□□□ 0.2
PTCH1-215ENST00000547672 MROH5Q6ZUA9 1318 aa16.28■□□□□ 0.2
PTCH1-215ENST00000547672 RAD50Q92878 1312 aa16.28■□□□□ 0.2
PTCH1-215ENST00000547672 MYH14Q7Z406 1995 aaKnown RBP16.28■□□□□ 0.2
PTCH1-215ENST00000547672 AK9Q5TCS8 1911 aa16.28■□□□□ 0.2
PTCH1-215ENST00000547672 GNPATO15228 680 aa16.28■□□□□ 0.2
PTCH1-215ENST00000547672 RFC4P35249 363 aa16.28■□□□□ 0.2
PTCH1-215ENST00000547672 TPTE2Q6XPS3 522 aa16.28■□□□□ 0.2
PTCH1-215ENST00000547672 MYH3P11055 1940 aa16.27■□□□□ 0.2
PTCH1-215ENST00000547672 RFX7Q2KHR2 1363 aa16.27■□□□□ 0.2
PTCH1-215ENST00000547672 TUBGCP6Q96RT7 1819 aa16.27■□□□□ 0.2
PTCH1-215ENST00000547672 METTL24Q5JXM2 366 aa16.27■□□□□ 0.2
PTCH1-215ENST00000547672 SLC10A5Q5PT55 438 aa16.27■□□□□ 0.2
PTCH1-215ENST00000547672 CDC5LQ99459 802 aaKnown RBP16.27■□□□□ 0.2
PTCH1-215ENST00000547672 MPHOSPH8Q99549 860 aa16.27■□□□□ 0.2
PTCH1-215ENST00000547672 HAUS7Q99871 368 aa16.27■□□□□ 0.2
PTCH1-215ENST00000547672 LY75O60449 1722 aa16.27■□□□□ 0.19
PTCH1-215ENST00000547672 SGSM2O43147 1006 aa16.26■□□□□ 0.19
PTCH1-215ENST00000547672 ST18O60284 1047 aa16.26■□□□□ 0.19
PTCH1-215ENST00000547672 NTSR2O95665 410 aa16.26■□□□□ 0.19
PTCH1-215ENST00000547672 RXRBP28702 533 aa16.26■□□□□ 0.19
PTCH1-215ENST00000547672 IGHMBP2P38935 993 aaKnown RBP16.26■□□□□ 0.19
PTCH1-215ENST00000547672 FSD1Q9BTV5 496 aa16.26■□□□□ 0.19
PTCH1-215ENST00000547672 BOLA2Q9H3K6 86 aa16.26■□□□□ 0.19
PTCH1-215ENST00000547672 GREM2Q9H772 168 aa16.26■□□□□ 0.19
PTCH1-215ENST00000547672 ANO2Q9NQ90 1003 aa16.26■□□□□ 0.19
PTCH1-215ENST00000547672 DBNLQ9UJU6 430 aaKnown RBP16.26■□□□□ 0.19
PTCH1-215ENST00000547672 RIPOR2Q9Y4F9 1068 aa16.26■□□□□ 0.19
PTCH1-215ENST00000547672 ABCC12Q96J65 1359 aa16.26■□□□□ 0.19
PTCH1-215ENST00000547672 A0A1B0GUL7 405 aa16.25■□□□□ 0.19
PTCH1-215ENST00000547672 MCM2P49736 904 aa16.25■□□□□ 0.19
PTCH1-215ENST00000547672 LRRC24Q50LG9 513 aa16.25■□□□□ 0.19
PTCH1-215ENST00000547672 ZNF594Q96JF6 807 aaPredicted RBP16.25■□□□□ 0.19
PTCH1-215ENST00000547672 BCORQ6W2J9 1755 aa16.24■□□□□ 0.19
PTCH1-215ENST00000547672 SF3B3Q15393 1217 aaKnown RBP16.24■□□□□ 0.19
PTCH1-215ENST00000547672 FAM182BQ5T319 152 aa16.24■□□□□ 0.19
PTCH1-215ENST00000547672 ZNF512BQ96KM6 892 aaPredicted RBP16.24■□□□□ 0.19
PTCH1-215ENST00000547672 DBNDD2Q9BQY9 259 aa16.24■□□□□ 0.19
PTCH1-215ENST00000547672 PLSCR1O15162 318 aa16.23■□□□□ 0.19
PTCH1-215ENST00000547672 PDE8BO95263 885 aa16.23■□□□□ 0.19
PTCH1-215ENST00000547672 MAP4K4O95819 1239 aaPredicted RBP16.23■□□□□ 0.19
PTCH1-215ENST00000547672 UQCRFS1P1P0C7P4 283 aa16.23■□□□□ 0.19
PTCH1-215ENST00000547672 SSFA2P28290 1259 aa16.23■□□□□ 0.19
PTCH1-215ENST00000547672 TIMM10P62072 90 aa16.23■□□□□ 0.19
PTCH1-215ENST00000547672 ATP2B3Q16720 1220 aa16.23■□□□□ 0.19
PTCH1-215ENST00000547672 TTC39AQ5SRH9 613 aa16.23■□□□□ 0.19
PTCH1-215ENST00000547672 USPL1Q5W0Q7 1092 aa16.23■□□□□ 0.19
PTCH1-215ENST00000547672 ARHGEF1Q92888 912 aaKnown RBP16.23■□□□□ 0.19
PTCH1-215ENST00000547672 NLRP3Q96P20 1036 aa16.23■□□□□ 0.19
PTCH1-215ENST00000547672 TBC1D2Q9BYX2 928 aa16.23■□□□□ 0.19
PTCH1-215ENST00000547672 ZFYP08048 801 aaPredicted RBP16.22■□□□□ 0.19
PTCH1-215ENST00000547672 IFIT1P09914 478 aaKnown RBP16.22■□□□□ 0.19
PTCH1-215ENST00000547672 HCLS1P14317 486 aaPredicted RBP16.22■□□□□ 0.19
PTCH1-215ENST00000547672 PUM3Q15397 648 aaKnown RBP16.22■□□□□ 0.19
PTCH1-215ENST00000547672 CWC27Q6UX04 472 aaKnown RBP16.22■□□□□ 0.19
PTCH1-215ENST00000547672 PTF1AQ7RTS3 328 aa16.22■□□□□ 0.19
PTCH1-215ENST00000547672 NBPF5PQ86XG9 351 aaPredicted RBP16.22■□□□□ 0.19
PTCH1-215ENST00000547672 SYNE4Q8N205 404 aa16.22■□□□□ 0.19
PTCH1-215ENST00000547672 FLAD1Q8NFF5 587 aa16.22■□□□□ 0.19
PTCH1-215ENST00000547672 LPIN2Q92539 896 aa16.22■□□□□ 0.19
PTCH1-215ENST00000547672 IL17RAQ96F46 866 aa16.22■□□□□ 0.19
PTCH1-215ENST00000547672 PUS3Q9BZE2 481 aaKnown RBP16.22■□□□□ 0.19
PTCH1-215ENST00000547672 TLR7Q9NYK1 1049 aaKnown RBP16.22■□□□□ 0.19
PTCH1-215ENST00000547672 ZNF609O15014 1411 aa16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms