RNA–Protein interactions for RNA: ENST00000543123.1

RTN3-212, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-212ENST00000543123 CCDC30Q5VVM6 783 aa16.94■□□□□ 0.3
RTN3-212ENST00000543123 FAM89AQ96GI7 184 aa16.94■□□□□ 0.3
RTN3-212ENST00000543123 ZNRF3Q9ULT6 936 aa16.94■□□□□ 0.3
RTN3-212ENST00000543123 DDX60Q8IY21 1712 aaKnown RBP16.93■□□□□ 0.3
RTN3-212ENST00000543123 TMEM88BA6NKF7 163 aa16.92■□□□□ 0.3
RTN3-212ENST00000543123 ELL2O00472 640 aaPredicted RBP16.92■□□□□ 0.3
RTN3-212ENST00000543123 KIAA2012Q0VF49 1180 aa16.92■□□□□ 0.3
RTN3-212ENST00000543123 SF3B3Q15393 1217 aaKnown RBP16.92■□□□□ 0.3
RTN3-212ENST00000543123 CCDC27Q2M243 656 aa16.92■□□□□ 0.3
RTN3-212ENST00000543123 USP50Q70EL3 339 aaPredicted RBP16.92■□□□□ 0.3
RTN3-212ENST00000543123 LRRC37AA6NMS7 1700 aa16.92■□□□□ 0.3
RTN3-212ENST00000543123 CDHR2Q9BYE9 1310 aa16.92■□□□□ 0.3
RTN3-212ENST00000543123 IRS4O14654 1257 aaPredicted RBP16.91■□□□□ 0.3
RTN3-212ENST00000543123 ITGBL1O95965 494 aaPredicted RBP16.91■□□□□ 0.3
RTN3-212ENST00000543123 SCNN1DP51172 638 aa16.91■□□□□ 0.3
RTN3-212ENST00000543123 TNIP1Q15025 636 aa16.91■□□□□ 0.3
RTN3-212ENST00000543123 CNTROBQ8N137 903 aa16.91■□□□□ 0.3
RTN3-212ENST00000543123 ZBTB38Q8NAP3 1195 aaPredicted RBP16.91■□□□□ 0.3
RTN3-212ENST00000543123 CNTNAP1P78357 1384 aa16.9■□□□□ 0.3
RTN3-212ENST00000543123 MAP1SQ66K74 1059 aaPredicted RBP16.9■□□□□ 0.3
RTN3-212ENST00000543123 SLC51AQ86UW1 340 aa16.9■□□□□ 0.3
RTN3-212ENST00000543123 C8orf58Q8NAV2 365 aa16.9■□□□□ 0.3
RTN3-212ENST00000543123 CCDC191Q8NCU4 936 aa16.9■□□□□ 0.3
RTN3-212ENST00000543123 STK31Q9BXU1 1019 aa16.9■□□□□ 0.3
RTN3-212ENST00000543123 MKRN1Q9UHC7 482 aaKnown RBP16.9■□□□□ 0.3
RTN3-212ENST00000543123 ANP32CO43423 234 aa16.89■□□□□ 0.29
RTN3-212ENST00000543123 HSPA1AP0DMV8 641 aaKnown RBP16.89■□□□□ 0.29
RTN3-212ENST00000543123 HSPA1BP0DMV9 641 aaKnown RBP16.89■□□□□ 0.29
RTN3-212ENST00000543123 NCBP3Q53F19 620 aaKnown RBP16.89■□□□□ 0.29
RTN3-212ENST00000543123 RTL5Q5HYW3 569 aaPredicted RBP16.89■□□□□ 0.29
RTN3-212ENST00000543123 CIAPIN1Q6FI81 312 aa16.89■□□□□ 0.29
RTN3-212ENST00000543123 MYD88Q99836 296 aa16.89■□□□□ 0.29
RTN3-212ENST00000543123 PHAXQ9H814 394 aaKnown RBP16.89■□□□□ 0.29
RTN3-212ENST00000543123 ADARB2Q9NS39 739 aaKnown RBP16.89■□□□□ 0.29
RTN3-212ENST00000543123 CWC25Q9NXE8 425 aaPredicted RBP16.89■□□□□ 0.29
RTN3-212ENST00000543123 GPRC5DQ9NZD1 345 aa16.89■□□□□ 0.29
RTN3-212ENST00000543123 LTBP1Q14766 1721 aa16.88■□□□□ 0.29
RTN3-212ENST00000543123 EPS15P42566 896 aa16.88■□□□□ 0.29
RTN3-212ENST00000543123 CXCL9Q07325 125 aa16.88■□□□□ 0.29
RTN3-212ENST00000543123 CCDC152Q4G0S7 254 aa16.88■□□□□ 0.29
RTN3-212ENST00000543123 ZNF428Q96B54 188 aa16.88■□□□□ 0.29
RTN3-212ENST00000543123 EYA3Q99504 573 aa16.88■□□□□ 0.29
RTN3-212ENST00000543123 MRS2Q9HD23 443 aa16.88■□□□□ 0.29
RTN3-212ENST00000543123 IL16Q14005 1332 aa16.88■□□□□ 0.29
RTN3-212ENST00000543123 DUOX1Q9NRD9 1551 aa16.87■□□□□ 0.29
RTN3-212ENST00000543123 PCCAP05165 728 aaPredicted RBP16.87■□□□□ 0.29
RTN3-212ENST00000543123 WASHC4Q2M389 1173 aa16.87■□□□□ 0.29
RTN3-212ENST00000543123 WWC1Q8IX03 1113 aa16.87■□□□□ 0.29
RTN3-212ENST00000543123 CELF1Q92879 486 aaKnown RBP16.87■□□□□ 0.29
RTN3-212ENST00000543123 METTL22Q9BUU2 404 aaPredicted RBP16.87■□□□□ 0.29
RTN3-212ENST00000543123 BCL2L13Q9BXK5 485 aa16.87■□□□□ 0.29
RTN3-212ENST00000543123 NSFL1CQ9UNZ2 370 aaKnown RBP16.87■□□□□ 0.29
RTN3-212ENST00000543123 GMPSP49915 693 aaPredicted RBP16.86■□□□□ 0.29
RTN3-212ENST00000543123 RPS8P62241 208 aaKnown RBP16.86■□□□□ 0.29
RTN3-212ENST00000543123 NEXNQ0ZGT2 675 aa16.86■□□□□ 0.29
RTN3-212ENST00000543123 TSR2Q969E8 191 aaKnown RBP16.86■□□□□ 0.29
RTN3-212ENST00000543123 TAF1P21675 1872 aa16.86■□□□□ 0.29
RTN3-212ENST00000543123 ZNF316A6NFI3 1004 aaPredicted RBP16.85■□□□□ 0.29
RTN3-212ENST00000543123 C6orf229H3BNL8 230 aa16.85■□□□□ 0.29
RTN3-212ENST00000543123 PDE8AO60658 829 aa16.85■□□□□ 0.29
RTN3-212ENST00000543123 RAD17O75943 681 aa16.85■□□□□ 0.29
RTN3-212ENST00000543123 ABT1Q9ULW3 272 aaKnown RBP16.85■□□□□ 0.29
RTN3-212ENST00000543123 MAP3K2Q9Y2U5 619 aa16.85■□□□□ 0.29
RTN3-212ENST00000543123 RASSF10A6NK89 507 aa16.84■□□□□ 0.29
RTN3-212ENST00000543123 TWISTNBQ3B726 338 aaPredicted RBP16.84■□□□□ 0.29
RTN3-212ENST00000543123 CCDC184Q52MB2 194 aa16.84■□□□□ 0.29
RTN3-212ENST00000543123 KSR2Q6VAB6 950 aa16.84■□□□□ 0.29
RTN3-212ENST00000543123 TSPYL6Q8N831 410 aa16.84■□□□□ 0.29
RTN3-212ENST00000543123 H7C1D1 291 aa16.83■□□□□ 0.28
RTN3-212ENST00000543123 GPSM2P81274 684 aa16.83■□□□□ 0.28
RTN3-212ENST00000543123 COL13A1Q5TAT6 717 aaPredicted RBP16.83■□□□□ 0.28
RTN3-212ENST00000543123 ZC3H15Q8WU90 426 aaKnown RBP16.83■□□□□ 0.28
RTN3-212ENST00000543123 AIDAQ96BJ3 306 aa16.83■□□□□ 0.28
RTN3-212ENST00000543123 ANKIB1Q9P2G1 1089 aa16.83■□□□□ 0.28
RTN3-212ENST00000543123 PI4KAP2A4QPH2 592 aa16.82■□□□□ 0.28
RTN3-212ENST00000543123 VEGFBP49765 207 aa16.82■□□□□ 0.28
RTN3-212ENST00000543123 DEFB115Q30KQ5 88 aa16.82■□□□□ 0.28
RTN3-212ENST00000543123 PI4KAP1Q8N8J0 262 aa16.82■□□□□ 0.28
RTN3-212ENST00000543123 ZC3H12CQ9C0D7 883 aaKnown RBP16.82■□□□□ 0.28
RTN3-212ENST00000543123 PODXL2Q9NZ53 605 aa16.82■□□□□ 0.28
RTN3-212ENST00000543123 YDJCA8MPS7 323 aa16.81■□□□□ 0.28
RTN3-212ENST00000543123 G3V3G9 751 aa16.81■□□□□ 0.28
RTN3-212ENST00000543123 UFL1O94874 794 aa16.81■□□□□ 0.28
RTN3-212ENST00000543123 RPS12P25398 132 aaKnown RBP16.81■□□□□ 0.28
RTN3-212ENST00000543123 DCAF8Q5TAQ9 597 aa16.81■□□□□ 0.28
RTN3-212ENST00000543123 ANKRD18AQ8IVF6 992 aa16.81■□□□□ 0.28
RTN3-212ENST00000543123 TNS4Q8IZW8 715 aa16.81■□□□□ 0.28
RTN3-212ENST00000543123 TBC1D16Q8TBP0 767 aa16.81■□□□□ 0.28
RTN3-212ENST00000543123 DPF2Q92785 391 aa16.81■□□□□ 0.28
RTN3-212ENST00000543123 CDC5LQ99459 802 aaKnown RBP16.81■□□□□ 0.28
RTN3-212ENST00000543123 POLLQ9UGP5 575 aa16.81■□□□□ 0.28
RTN3-212ENST00000543123 CNOT7Q9UIV1 285 aaKnown RBP16.81■□□□□ 0.28
RTN3-212ENST00000543123 GGA1Q9UJY5 639 aa16.81■□□□□ 0.28
RTN3-212ENST00000543123 RIMBP2O15034 1052 aa16.8■□□□□ 0.28
RTN3-212ENST00000543123 ECE2O60344 883 aa16.8■□□□□ 0.28
RTN3-212ENST00000543123 ECE1P42892 770 aa16.8■□□□□ 0.28
RTN3-212ENST00000543123 CTSWP56202 376 aa16.8■□□□□ 0.28
RTN3-212ENST00000543123 WDR63Q8IWG1 891 aa16.8■□□□□ 0.28
RTN3-212ENST00000543123 DBNDD1Q9H9R9 158 aa16.8■□□□□ 0.28
RTN3-212ENST00000543123 SEC31BQ9NQW1 1179 aa16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms