RNA–Protein interactions for RNA: ENST00000541342.2

SPIDR-227, Transcript of scaffold protein involved in DNA repair, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SPIDR, Length 3,311 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPIDR-227ENST00000541342 ZBTB1Q9Y2K1 713 aa20.67■□□□□ 0.9
SPIDR-227ENST00000541342 ECHDC1Q9NTX5 307 aa20.67■□□□□ 0.9
SPIDR-227ENST00000541342 TCHHQ07283 1943 aa20.67■□□□□ 0.9
SPIDR-227ENST00000541342 KIF6Q6ZMV9 814 aa20.66■□□□□ 0.9
SPIDR-227ENST00000541342 CCDC8Q9H0W5 538 aaPredicted RBP20.66■□□□□ 0.9
SPIDR-227ENST00000541342 GLRX3O76003 335 aaKnown RBP20.66■□□□□ 0.9
SPIDR-227ENST00000541342 TPM2P07951 284 aa20.65■□□□□ 0.9
SPIDR-227ENST00000541342 MSNP26038 577 aaKnown RBP20.65■□□□□ 0.9
SPIDR-227ENST00000541342 ANAPC15P60006 121 aa20.65■□□□□ 0.9
SPIDR-227ENST00000541342 ANO2Q9NQ90 1003 aa20.65■□□□□ 0.9
SPIDR-227ENST00000541342 MAP3K15Q6ZN16 1313 aa20.65■□□□□ 0.9
SPIDR-227ENST00000541342 MCM2P49736 904 aa20.65■□□□□ 0.9
SPIDR-227ENST00000541342 HLFQ16534 295 aa20.65■□□□□ 0.9
SPIDR-227ENST00000541342 NOL8Q76FK4 1167 aaKnown RBP20.65■□□□□ 0.9
SPIDR-227ENST00000541342 A0A0G2JS52 829 aa20.65■□□□□ 0.9
SPIDR-227ENST00000541342 FAM98CQ17RN3 349 aaKnown RBP20.65■□□□□ 0.9
SPIDR-227ENST00000541342 NGLY1Q96IV0 654 aa20.65■□□□□ 0.9
SPIDR-227ENST00000541342 ANKRD36CQ5JPF3 1778 aa20.64■□□□□ 0.9
SPIDR-227ENST00000541342 CNTROBQ8N137 903 aa20.64■□□□□ 0.89
SPIDR-227ENST00000541342 INTS4Q96HW7 963 aaKnown RBP20.64■□□□□ 0.89
SPIDR-227ENST00000541342 TRIM28Q13263 835 aaKnown RBP20.63■□□□□ 0.89
SPIDR-227ENST00000541342 UPF3BQ9BZI7 483 aaKnown RBP20.63■□□□□ 0.89
SPIDR-227ENST00000541342 NUP98P52948 1817 aa20.63■□□□□ 0.89
SPIDR-227ENST00000541342 CHMP3Q9Y3E7 222 aa20.63■□□□□ 0.89
SPIDR-227ENST00000541342 ZNF500O60304 480 aaPredicted RBP20.63■□□□□ 0.89
SPIDR-227ENST00000541342 TFCP2Q12800 502 aa20.63■□□□□ 0.89
SPIDR-227ENST00000541342 VPS72Q15906 364 aa20.63■□□□□ 0.89
SPIDR-227ENST00000541342 GIGYF2Q6Y7W6 1299 aaKnown RBP20.62■□□□□ 0.89
SPIDR-227ENST00000541342 GPATCH3Q96I76 525 aa20.62■□□□□ 0.89
SPIDR-227ENST00000541342 KCNQ2O43526 872 aa20.61■□□□□ 0.89
SPIDR-227ENST00000541342 MBD3O95983 291 aa20.61■□□□□ 0.89
SPIDR-227ENST00000541342 FNBP4Q8N3X1 1017 aaPredicted RBP20.61■□□□□ 0.89
SPIDR-227ENST00000541342 MCCP23508 829 aa20.6■□□□□ 0.89
SPIDR-227ENST00000541342 CICQ96RK0 1608 aaPredicted RBP20.6■□□□□ 0.89
SPIDR-227ENST00000541342 FAM89AQ96GI7 184 aa20.6■□□□□ 0.89
SPIDR-227ENST00000541342 MYH14Q7Z406 1995 aaKnown RBP20.6■□□□□ 0.89
SPIDR-227ENST00000541342 IL6STP40189 918 aaPredicted RBP20.6■□□□□ 0.89
SPIDR-227ENST00000541342 TNNI3KQ59H18 835 aa20.6■□□□□ 0.89
SPIDR-227ENST00000541342 INTS5Q6P9B9 1019 aaKnown RBP20.6■□□□□ 0.89
SPIDR-227ENST00000541342 FPGT-TNNI3KV9GXZ4 949 aa20.6■□□□□ 0.89
SPIDR-227ENST00000541342 RREB1Q92766 1687 aa20.6■□□□□ 0.89
SPIDR-227ENST00000541342 PDZRN4Q6ZMN7 1036 aaPredicted RBP20.59■□□□□ 0.89
SPIDR-227ENST00000541342 ATG9AQ7Z3C6 839 aa20.59■□□□□ 0.89
SPIDR-227ENST00000541342 GADD45BO75293 160 aaPredicted RBP20.59■□□□□ 0.89
SPIDR-227ENST00000541342 ATP6V1AP38606 617 aa20.59■□□□□ 0.89
SPIDR-227ENST00000541342 RNF214Q8ND24 703 aa20.59■□□□□ 0.89
SPIDR-227ENST00000541342 DBNLQ9UJU6 430 aaKnown RBP20.59■□□□□ 0.89
SPIDR-227ENST00000541342 ZKSCAN5Q9Y2L8 839 aa20.59■□□□□ 0.89
SPIDR-227ENST00000541342 LOC102724428A0A0B4J2F2 783 aa20.58■□□□□ 0.89
SPIDR-227ENST00000541342 PCCAP05165 728 aaPredicted RBP20.58■□□□□ 0.89
SPIDR-227ENST00000541342 GPTP24298 496 aa20.58■□□□□ 0.89
SPIDR-227ENST00000541342 SIK1P57059 783 aa20.58■□□□□ 0.89
SPIDR-227ENST00000541342 ITPK1Q13572 414 aa20.58■□□□□ 0.89
SPIDR-227ENST00000541342 SYNE4Q8N205 404 aa20.58■□□□□ 0.89
SPIDR-227ENST00000541342 GDPD2Q9HCC8 539 aa20.58■□□□□ 0.89
SPIDR-227ENST00000541342 SGSM2O43147 1006 aa20.58■□□□□ 0.89
SPIDR-227ENST00000541342 HSPA4P34932 840 aa20.58■□□□□ 0.89
SPIDR-227ENST00000541342 NLRP10Q86W26 655 aa20.58■□□□□ 0.89
SPIDR-227ENST00000541342 ZNF594Q96JF6 807 aaPredicted RBP20.58■□□□□ 0.89
SPIDR-227ENST00000541342 TBC1D2BQ9UPU7 963 aa20.58■□□□□ 0.89
SPIDR-227ENST00000541342 PALLDQ8WX93 1383 aa20.58■□□□□ 0.88
SPIDR-227ENST00000541342 RPAP1Q9BWH6 1393 aaPredicted RBP20.58■□□□□ 0.88
SPIDR-227ENST00000541342 ZBTB38Q8NAP3 1195 aaPredicted RBP20.58■□□□□ 0.88
SPIDR-227ENST00000541342 FOXD4L6Q3SYB3 417 aaPredicted RBP20.57■□□□□ 0.88
SPIDR-227ENST00000541342 FOXD4L3Q6VB84 417 aaPredicted RBP20.57■□□□□ 0.88
SPIDR-227ENST00000541342 DZIP3Q86Y13 1208 aaKnown RBP20.57■□□□□ 0.88
SPIDR-227ENST00000541342 CRKLP46109 303 aaKnown RBP20.56■□□□□ 0.88
SPIDR-227ENST00000541342 CWC27Q6UX04 472 aaKnown RBP20.56■□□□□ 0.88
SPIDR-227ENST00000541342 EVI5LQ96CN4 794 aa20.56■□□□□ 0.88
SPIDR-227ENST00000541342 BOLA2Q9H3K6 86 aa20.56■□□□□ 0.88
SPIDR-227ENST00000541342 EIF5P55010 431 aaKnown RBP20.56■□□□□ 0.88
SPIDR-227ENST00000541342 SPATA31A6Q5VVP1 1343 aa20.56■□□□□ 0.88
SPIDR-227ENST00000541342 LRRC24Q50LG9 513 aa20.56■□□□□ 0.88
SPIDR-227ENST00000541342 COL5A3P25940 1745 aaPredicted RBP20.56■□□□□ 0.88
SPIDR-227ENST00000541342 PLA2G12BQ9BX93 195 aa20.55■□□□□ 0.88
SPIDR-227ENST00000541342 CCDC87Q9NVE4 849 aa20.55■□□□□ 0.88
SPIDR-227ENST00000541342 TERF1P54274 439 aa20.55■□□□□ 0.88
SPIDR-227ENST00000541342 USP21Q9UK80 565 aa20.55■□□□□ 0.88
SPIDR-227ENST00000541342 ERVV-1B6SEH8 477 aa20.55■□□□□ 0.88
SPIDR-227ENST00000541342 HSP90AB3PQ58FF7 597 aa20.55■□□□□ 0.88
SPIDR-227ENST00000541342 CERKQ8TCT0 537 aa20.55■□□□□ 0.88
SPIDR-227ENST00000541342 USP48Q86UV5 1035 aa20.54■□□□□ 0.88
SPIDR-227ENST00000541342 DBNDD2Q9BQY9 259 aa20.54■□□□□ 0.88
SPIDR-227ENST00000541342 MYH3P11055 1940 aa20.54■□□□□ 0.88
SPIDR-227ENST00000541342 THSD7AQ9UPZ6 1657 aa20.54■□□□□ 0.88
SPIDR-227ENST00000541342 PUS3Q9BZE2 481 aaKnown RBP20.54■□□□□ 0.88
SPIDR-227ENST00000541342 UBN2Q6ZU65 1347 aa20.54■□□□□ 0.88
SPIDR-227ENST00000541342 LSG1Q9H089 658 aaKnown RBP20.53■□□□□ 0.88
SPIDR-227ENST00000541342 R3HCC1Q9Y3T6 440 aaKnown RBP20.53■□□□□ 0.88
SPIDR-227ENST00000541342 RAD50Q92878 1312 aa20.53■□□□□ 0.88
SPIDR-227ENST00000541342 CDHR2Q9BYE9 1310 aa20.53■□□□□ 0.88
SPIDR-227ENST00000541342 EYA2O00167 538 aa20.53■□□□□ 0.88
SPIDR-227ENST00000541342 CSF1RP07333 972 aa20.53■□□□□ 0.88
SPIDR-227ENST00000541342 CCDC85AQ96PX6 553 aaPredicted RBP20.53■□□□□ 0.88
SPIDR-227ENST00000541342 PTF1AQ7RTS3 328 aa20.53■□□□□ 0.88
SPIDR-227ENST00000541342 TTC14Q96N46 770 aa20.53■□□□□ 0.88
SPIDR-227ENST00000541342 TSPY26PQ9H489 355 aa20.53■□□□□ 0.88
SPIDR-227ENST00000541342 DIAPH3Q9NSV4 1193 aa20.53■□□□□ 0.88
SPIDR-227ENST00000541342 EPB41L2O43491 1005 aaKnown RBP20.52■□□□□ 0.88
SPIDR-227ENST00000541342 IL15P40933 162 aaPredicted RBP20.52■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 90.6 ms