RNA–Protein interactions for RNA: ENST00000538235.2

CHFR-216, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 3

Gene CHFR, Length 687 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-216ENST00000538235 C7orf43Q8WVR3 580 aa16.62■□□□□ 0.25
CHFR-216ENST00000538235 MASTLQ96GX5 879 aa16.62■□□□□ 0.25
CHFR-216ENST00000538235 SUCLG2Q96I99 432 aa16.62■□□□□ 0.25
CHFR-216ENST00000538235 USP44Q9H0E7 712 aa16.62■□□□□ 0.25
CHFR-216ENST00000538235 SEC31BQ9NQW1 1179 aa16.62■□□□□ 0.25
CHFR-216ENST00000538235 PIM2Q9P1W9 311 aa16.62■□□□□ 0.25
CHFR-216ENST00000538235 ZNF646O15015 1829 aaPredicted RBP16.61■□□□□ 0.25
CHFR-216ENST00000538235 NPR1P16066 1061 aa16.61■□□□□ 0.25
CHFR-216ENST00000538235 SF3B3Q15393 1217 aaKnown RBP16.61■□□□□ 0.25
CHFR-216ENST00000538235 C20orf194Q5TEA3 1177 aa16.61■□□□□ 0.25
CHFR-216ENST00000538235 TMEM57Q8N5G2 664 aa16.61■□□□□ 0.25
CHFR-216ENST00000538235 ARHGAP45Q92619 1136 aa16.61■□□□□ 0.25
CHFR-216ENST00000538235 CELF1Q92879 486 aaKnown RBP16.61■□□□□ 0.25
CHFR-216ENST00000538235 API5Q9BZZ5 524 aaKnown RBP16.61■□□□□ 0.25
CHFR-216ENST00000538235 ZNF219Q9P2Y4 722 aaPredicted RBP16.61■□□□□ 0.25
CHFR-216ENST00000538235 CTSWP56202 376 aa16.6■□□□□ 0.25
CHFR-216ENST00000538235 ANKRD44Q8N8A2 993 aa16.6■□□□□ 0.25
CHFR-216ENST00000538235 MEIS3Q99687 375 aa16.6■□□□□ 0.25
CHFR-216ENST00000538235 PLA2G12BQ9BX93 195 aa16.6■□□□□ 0.25
CHFR-216ENST00000538235 NFKBIEO00221 500 aa16.59■□□□□ 0.25
CHFR-216ENST00000538235 PDE8AO60658 829 aa16.59■□□□□ 0.25
CHFR-216ENST00000538235 RASSF7Q02833 373 aa16.59■□□□□ 0.25
CHFR-216ENST00000538235 FAM161AQ3B820 660 aa16.59■□□□□ 0.25
CHFR-216ENST00000538235 DALRD3Q5D0E6 543 aaKnown RBP16.59■□□□□ 0.25
CHFR-216ENST00000538235 ZKSCAN2Q63HK3 967 aa16.59■□□□□ 0.25
CHFR-216ENST00000538235 INTS3Q68E01 1043 aaKnown RBP16.59■□□□□ 0.25
CHFR-216ENST00000538235 TTLL6Q8N841 843 aa16.59■□□□□ 0.25
CHFR-216ENST00000538235 TTLL11Q8NHH1 800 aa16.59■□□□□ 0.25
CHFR-216ENST00000538235 PANK1Q8TE04 598 aa16.59■□□□□ 0.25
CHFR-216ENST00000538235 NLRP3Q96P20 1036 aa16.59■□□□□ 0.25
CHFR-216ENST00000538235 GREM2Q9H772 168 aa16.59■□□□□ 0.25
CHFR-216ENST00000538235 C21orf2O43822 256 aa16.58■□□□□ 0.24
CHFR-216ENST00000538235 GPR162Q16538 588 aa16.58■□□□□ 0.24
CHFR-216ENST00000538235 CRAMP1Q96RY5 1269 aa16.58■□□□□ 0.24
CHFR-216ENST00000538235 RTL9Q8NET4 1388 aa16.57■□□□□ 0.24
CHFR-216ENST00000538235 RPGRQ92834 1020 aaKnown RBP16.57■□□□□ 0.24
CHFR-216ENST00000538235 CSF1RP07333 972 aa16.56■□□□□ 0.24
CHFR-216ENST00000538235 BICC1Q9H694 974 aaKnown RBP16.56■□□□□ 0.24
CHFR-216ENST00000538235 PDZRN3Q9UPQ7 1066 aa16.56■□□□□ 0.24
CHFR-216ENST00000538235 SCN9AQ15858 1988 aa16.55■□□□□ 0.24
CHFR-216ENST00000538235 CCT4P50991 539 aaKnown RBP16.55■□□□□ 0.24
CHFR-216ENST00000538235 GRAPQ13588 217 aa16.55■□□□□ 0.24
CHFR-216ENST00000538235 GRAPLQ8TC17 118 aaPredicted RBP16.55■□□□□ 0.24
CHFR-216ENST00000538235 CNKSR1Q969H4 720 aa16.55■□□□□ 0.24
CHFR-216ENST00000538235 WTIPA6NIX2 430 aaPredicted RBP16.54■□□□□ 0.24
CHFR-216ENST00000538235 PPEF1O14829 653 aaPredicted RBP16.54■□□□□ 0.24
CHFR-216ENST00000538235 RABL6Q3YEC7 729 aaPredicted RBP16.54■□□□□ 0.24
CHFR-216ENST00000538235 RBM17Q96I25 401 aaKnown RBP16.54■□□□□ 0.24
CHFR-216ENST00000538235 C9orf78Q9NZ63 289 aaPredicted RBP16.54■□□□□ 0.24
CHFR-216ENST00000538235 LMBR1LQ6UX01 489 aa16.53■□□□□ 0.24
CHFR-216ENST00000538235 DZIP1LQ8IYY4 767 aaKnown RBP16.53■□□□□ 0.24
CHFR-216ENST00000538235 LRRFIP2Q9Y608 721 aaKnown RBP16.53■□□□□ 0.24
CHFR-216ENST00000538235 PSME4Q14997 1843 aa16.53■□□□□ 0.24
CHFR-216ENST00000538235 IPO8O15397 1037 aaKnown RBP16.52■□□□□ 0.24
CHFR-216ENST00000538235 ZNF594Q96JF6 807 aaPredicted RBP16.52■□□□□ 0.24
CHFR-216ENST00000538235 ITGA6P23229 1130 aa16.51■□□□□ 0.23
CHFR-216ENST00000538235 RFX5P48382 616 aaPredicted RBP16.51■□□□□ 0.23
CHFR-216ENST00000538235 CCDC152Q4G0S7 254 aa16.51■□□□□ 0.23
CHFR-216ENST00000538235 DDX46Q7L014 1031 aaKnown RBP16.51■□□□□ 0.23
CHFR-216ENST00000538235 C1orf115Q9H7X2 142 aa16.51■□□□□ 0.23
CHFR-216ENST00000538235 ATP6V0A2Q9Y487 856 aa16.51■□□□□ 0.23
CHFR-216ENST00000538235 ARAP2Q8WZ64 1704 aa16.5■□□□□ 0.23
CHFR-216ENST00000538235 ALDH1B1P30837 517 aa16.5■□□□□ 0.23
CHFR-216ENST00000538235 RRP1P56182 461 aaKnown RBP16.5■□□□□ 0.23
CHFR-216ENST00000538235 ARHGAP27Q6ZUM4 889 aa16.5■□□□□ 0.23
CHFR-216ENST00000538235 KLHDC4Q8TBB5 520 aa16.5■□□□□ 0.23
CHFR-216ENST00000538235 GPR101Q96P66 508 aaPredicted RBP16.5■□□□□ 0.23
CHFR-216ENST00000538235 COG6Q9Y2V7 657 aa16.5■□□□□ 0.23
CHFR-216ENST00000538235 GPSM2P81274 684 aa16.49■□□□□ 0.23
CHFR-216ENST00000538235 CCDC93Q567U6 631 aa16.49■□□□□ 0.23
CHFR-216ENST00000538235 PUS3Q9BZE2 481 aaKnown RBP16.49■□□□□ 0.23
CHFR-216ENST00000538235 LTBP3Q9NS15 1303 aa16.48■□□□□ 0.23
CHFR-216ENST00000538235 ZBTB7BO15156 539 aaPredicted RBP16.48■□□□□ 0.23
CHFR-216ENST00000538235 UBTFL1P0CB47 393 aaPredicted RBP16.48■□□□□ 0.23
CHFR-216ENST00000538235 RPS8P62241 208 aaKnown RBP16.48■□□□□ 0.23
CHFR-216ENST00000538235 ITPRIPQ8IWB1 547 aa16.48■□□□□ 0.23
CHFR-216ENST00000538235 SNAP23O00161 211 aa16.47■□□□□ 0.23
CHFR-216ENST00000538235 GRIN3BO60391 1043 aa16.47■□□□□ 0.23
CHFR-216ENST00000538235 MVPQ14764 893 aaKnown RBP16.47■□□□□ 0.23
CHFR-216ENST00000538235 SP8Q8IXZ3 490 aa16.47■□□□□ 0.23
CHFR-216ENST00000538235 FTSJ3Q8IY81 847 aaKnown RBP16.47■□□□□ 0.23
CHFR-216ENST00000538235 ZNF277Q9NRM2 450 aaPredicted RBP16.47■□□□□ 0.23
CHFR-216ENST00000538235 CHMP3Q9Y3E7 222 aa16.47■□□□□ 0.23
CHFR-216ENST00000538235 PNMA6EA0A0J9YXQ4 647 aa16.46■□□□□ 0.23
CHFR-216ENST00000538235 BBOX1O75936 387 aa16.46■□□□□ 0.23
CHFR-216ENST00000538235 IRS2Q9Y4H2 1338 aa16.45■□□□□ 0.22
CHFR-216ENST00000538235 KLRK1P26718 216 aa16.45■□□□□ 0.22
CHFR-216ENST00000538235 FKBP4Q02790 459 aaKnown RBP eCLIP16.45■□□□□ 0.22
CHFR-216ENST00000538235 LRRC24Q50LG9 513 aa16.45■□□□□ 0.22
CHFR-216ENST00000538235 C9orf131Q5VYM1 1079 aa16.45■□□□□ 0.22
CHFR-216ENST00000538235 ANKRD18AQ8IVF6 992 aa16.45■□□□□ 0.22
CHFR-216ENST00000538235 TAOK3Q9H2K8 898 aa16.45■□□□□ 0.22
CHFR-216ENST00000538235 POLLQ9UGP5 575 aa16.45■□□□□ 0.22
CHFR-216ENST00000538235 MINPP1Q9UNW1 487 aa16.45■□□□□ 0.22
CHFR-216ENST00000538235 PA2G4Q9UQ80 394 aaKnown RBP16.45■□□□□ 0.22
CHFR-216ENST00000538235 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.45■□□□□ 0.22
CHFR-216ENST00000538235 PTPN12Q05209 780 aaKnown RBP16.44■□□□□ 0.22
CHFR-216ENST00000538235 RTFDC1Q9BY42 306 aaPredicted RBP16.44■□□□□ 0.22
CHFR-216ENST00000538235 MYH13Q9UKX3 1938 aa16.44■□□□□ 0.22
CHFR-216ENST00000538235 ANKRD18BA2A2Z9 1011 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms