RNA–Protein interactions for RNA: ENST00000531727.5

CPSF1-207, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3 BASIC

Gene CPSF1, Length 704 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-207ENST00000531727 TRIM28Q13263 835 aaKnown RBP21.79■■□□□ 1.08
CPSF1-207ENST00000531727 TMC4Q7Z404 712 aa21.79■■□□□ 1.08
CPSF1-207ENST00000531727 PCNTO95613 3336 aa21.78■■□□□ 1.08
CPSF1-207ENST00000531727 GOLGA2Q08379 1002 aa21.78■■□□□ 1.08
CPSF1-207ENST00000531727 PHAXQ9H814 394 aaKnown RBP21.78■■□□□ 1.08
CPSF1-207ENST00000531727 MKRN1Q9UHC7 482 aaKnown RBP21.78■■□□□ 1.08
CPSF1-207ENST00000531727 ZNRF3Q9ULT6 936 aa21.78■■□□□ 1.08
CPSF1-207ENST00000531727 TMEM88BA6NKF7 163 aa21.77■■□□□ 1.08
CPSF1-207ENST00000531727 SF3B3Q15393 1217 aaKnown RBP21.77■■□□□ 1.08
CPSF1-207ENST00000531727 CCDC184Q52MB2 194 aa21.77■■□□□ 1.08
CPSF1-207ENST00000531727 RIC3Q7Z5B4 369 aa21.77■■□□□ 1.08
CPSF1-207ENST00000531727 CNTROBQ8N137 903 aa21.77■■□□□ 1.08
CPSF1-207ENST00000531727 C8orf58Q8NAV2 365 aa21.77■■□□□ 1.08
CPSF1-207ENST00000531727 DUOX1Q9NRD9 1551 aa21.77■■□□□ 1.08
CPSF1-207ENST00000531727 CNTNAP1P78357 1384 aa21.76■■□□□ 1.07
CPSF1-207ENST00000531727 HSPA1AP0DMV8 641 aaKnown RBP21.76■■□□□ 1.07
CPSF1-207ENST00000531727 HSPA1BP0DMV9 641 aaKnown RBP21.76■■□□□ 1.07
CPSF1-207ENST00000531727 EPS15P42566 896 aa21.76■■□□□ 1.07
CPSF1-207ENST00000531727 KIAA2012Q0VF49 1180 aa21.76■■□□□ 1.07
CPSF1-207ENST00000531727 MAP1SQ66K74 1059 aaPredicted RBP21.76■■□□□ 1.07
CPSF1-207ENST00000531727 CXCL9Q07325 125 aa21.75■■□□□ 1.07
CPSF1-207ENST00000531727 RTL5Q5HYW3 569 aaPredicted RBP21.75■■□□□ 1.07
CPSF1-207ENST00000531727 IRS4O14654 1257 aaPredicted RBP21.74■■□□□ 1.07
CPSF1-207ENST00000531727 CCDC30Q5VVM6 783 aa21.74■■□□□ 1.07
CPSF1-207ENST00000531727 USP50Q70EL3 339 aaPredicted RBP21.74■■□□□ 1.07
CPSF1-207ENST00000531727 CELF1Q92879 486 aaKnown RBP21.74■■□□□ 1.07
CPSF1-207ENST00000531727 CHMP4AQ9BY43 222 aa21.74■■□□□ 1.07
CPSF1-207ENST00000531727 COL4A1P02462 1669 aa21.73■■□□□ 1.07
CPSF1-207ENST00000531727 COL13A1Q5TAT6 717 aaPredicted RBP21.73■■□□□ 1.07
CPSF1-207ENST00000531727 ZBTB38Q8NAP3 1195 aaPredicted RBP21.73■■□□□ 1.07
CPSF1-207ENST00000531727 GPRC5DQ9NZD1 345 aa21.73■■□□□ 1.07
CPSF1-207ENST00000531727 ZEB1P37275 1124 aaPredicted RBP21.72■■□□□ 1.07
CPSF1-207ENST00000531727 CCDC27Q2M243 656 aa21.72■■□□□ 1.07
CPSF1-207ENST00000531727 MYD88Q99836 296 aa21.72■■□□□ 1.07
CPSF1-207ENST00000531727 CIAPIN1Q6FI81 312 aa21.71■■□□□ 1.07
CPSF1-207ENST00000531727 CCDC191Q8NCU4 936 aa21.71■■□□□ 1.07
CPSF1-207ENST00000531727 ADARB2Q9NS39 739 aaKnown RBP21.71■■□□□ 1.07
CPSF1-207ENST00000531727 DDX58O95786 925 aaKnown RBP21.7■■□□□ 1.06
CPSF1-207ENST00000531727 HSP90B1P14625 803 aaKnown RBP21.7■■□□□ 1.06
CPSF1-207ENST00000531727 TNIP1Q15025 636 aa21.7■■□□□ 1.06
CPSF1-207ENST00000531727 TSPYL6Q8N831 410 aa21.7■■□□□ 1.06
CPSF1-207ENST00000531727 TSR2Q969E8 191 aaKnown RBP21.7■■□□□ 1.06
CPSF1-207ENST00000531727 CDHR2Q9BYE9 1310 aa21.7■■□□□ 1.06
CPSF1-207ENST00000531727 RAD17O75943 681 aa21.69■■□□□ 1.06
CPSF1-207ENST00000531727 GMPSP49915 693 aaPredicted RBP21.69■■□□□ 1.06
CPSF1-207ENST00000531727 WWC1Q8IX03 1113 aa21.69■■□□□ 1.06
CPSF1-207ENST00000531727 METTL22Q9BUU2 404 aaPredicted RBP21.69■■□□□ 1.06
CPSF1-207ENST00000531727 NSFL1CQ9UNZ2 370 aaKnown RBP21.69■■□□□ 1.06
CPSF1-207ENST00000531727 YDJCA8MPS7 323 aa21.68■■□□□ 1.06
CPSF1-207ENST00000531727 PCCAP05165 728 aaPredicted RBP21.68■■□□□ 1.06
CPSF1-207ENST00000531727 VEGFBP49765 207 aa21.68■■□□□ 1.06
CPSF1-207ENST00000531727 RPS8P62241 208 aaKnown RBP21.68■■□□□ 1.06
CPSF1-207ENST00000531727 WASHC4Q2M389 1173 aa21.68■■□□□ 1.06
CPSF1-207ENST00000531727 CWC25Q9NXE8 425 aaPredicted RBP21.68■■□□□ 1.06
CPSF1-207ENST00000531727 GPSM2P81274 684 aa21.67■■□□□ 1.06
CPSF1-207ENST00000531727 TRPM7Q96QT4 1865 aa21.66■■□□□ 1.06
CPSF1-207ENST00000531727 IL16Q14005 1332 aa21.66■■□□□ 1.06
CPSF1-207ENST00000531727 RASSF10A6NK89 507 aa21.66■■□□□ 1.06
CPSF1-207ENST00000531727 PDE8AO60658 829 aa21.66■■□□□ 1.06
CPSF1-207ENST00000531727 DEFB115Q30KQ5 88 aa21.66■■□□□ 1.06
CPSF1-207ENST00000531727 NCBP3Q53F19 620 aaKnown RBP21.66■■□□□ 1.06
CPSF1-207ENST00000531727 BCL2L13Q9BXK5 485 aa21.66■■□□□ 1.06
CPSF1-207ENST00000531727 POLLQ9UGP5 575 aa21.66■■□□□ 1.06
CPSF1-207ENST00000531727 MAP3K2Q9Y2U5 619 aa21.66■■□□□ 1.06
CPSF1-207ENST00000531727 C6orf229H3BNL8 230 aa21.65■■□□□ 1.06
CPSF1-207ENST00000531727 CCDC152Q4G0S7 254 aa21.65■■□□□ 1.06
CPSF1-207ENST00000531727 KSR2Q6VAB6 950 aa21.65■■□□□ 1.06
CPSF1-207ENST00000531727 STK31Q9BXU1 1019 aa21.65■■□□□ 1.06
CPSF1-207ENST00000531727 MRS2Q9HD23 443 aa21.65■■□□□ 1.06
CPSF1-207ENST00000531727 SEC31BQ9NQW1 1179 aa21.65■■□□□ 1.06
CPSF1-207ENST00000531727 ABT1Q9ULW3 272 aaKnown RBP21.65■■□□□ 1.06
CPSF1-207ENST00000531727 RIMBP2O15034 1052 aa21.64■■□□□ 1.05
CPSF1-207ENST00000531727 FMR1Q06787 632 aaKnown RBP eCLIP21.64■■□□□ 1.055e-7■■■■□ 21.1
CPSF1-207ENST00000531727 TWISTNBQ3B726 338 aaPredicted RBP21.64■■□□□ 1.05
CPSF1-207ENST00000531727 JARID2Q92833 1246 aaPredicted RBP21.64■■□□□ 1.05
CPSF1-207ENST00000531727 EYA3Q99504 573 aa21.64■■□□□ 1.05
CPSF1-207ENST00000531727 PI4KAP2A4QPH2 592 aa21.63■■□□□ 1.05
CPSF1-207ENST00000531727 ZNF316A6NFI3 1004 aaPredicted RBP21.63■■□□□ 1.05
CPSF1-207ENST00000531727 TRAF5O00463 557 aa21.63■■□□□ 1.05
CPSF1-207ENST00000531727 ANP32CO43423 234 aa21.63■■□□□ 1.05
CPSF1-207ENST00000531727 TNS4Q8IZW8 715 aa21.63■■□□□ 1.05
CPSF1-207ENST00000531727 PI4KAP1Q8N8J0 262 aa21.63■■□□□ 1.05
CPSF1-207ENST00000531727 TBC1D16Q8TBP0 767 aa21.63■■□□□ 1.05
CPSF1-207ENST00000531727 DBNDD1Q9H9R9 158 aa21.63■■□□□ 1.05
CPSF1-207ENST00000531727 PODXL2Q9NZ53 605 aa21.63■■□□□ 1.05
CPSF1-207ENST00000531727 IGKV5-2P06315 115 aa21.62■■□□□ 1.05
CPSF1-207ENST00000531727 PGAP2Q9UHJ9 254 aa21.62■■□□□ 1.05
CPSF1-207ENST00000531727 CNOT7Q9UIV1 285 aaKnown RBP21.62■■□□□ 1.05
CPSF1-207ENST00000531727 PSMD14O00487 310 aa21.61■■□□□ 1.05
CPSF1-207ENST00000531727 ECE2O60344 883 aa21.61■■□□□ 1.05
CPSF1-207ENST00000531727 HIRAP54198 1017 aaPredicted RBP21.61■■□□□ 1.05
CPSF1-207ENST00000531727 NEXNQ0ZGT2 675 aa21.61■■□□□ 1.05
CPSF1-207ENST00000531727 CST9Q5W186 159 aa21.61■■□□□ 1.05
CPSF1-207ENST00000531727 TRPM4Q8TD43 1214 aa21.61■■□□□ 1.05
CPSF1-207ENST00000531727 ZC3H15Q8WU90 426 aaKnown RBP21.61■■□□□ 1.05
CPSF1-207ENST00000531727 H7C1D1 291 aa21.6■■□□□ 1.05
CPSF1-207ENST00000531727 FOXN1O15353 648 aa21.6■■□□□ 1.05
CPSF1-207ENST00000531727 DOK7Q18PE1 504 aa21.6■■□□□ 1.05
CPSF1-207ENST00000531727 MICALL2Q8IY33 904 aa21.6■■□□□ 1.05
CPSF1-207ENST00000531727 DPF2Q92785 391 aa21.6■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms