RNA–Protein interactions for RNA: ENST00000526433.1

SSSCA1-202, Transcript of Sjogren syndrome/scleroderma autoantigen 1, humanhuman

TSL 3

Gene SSSCA1, Length 739 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSSCA1-202ENST00000526433 LTBP3Q9NS15 1303 aa20.6■□□□□ 0.89
SSSCA1-202ENST00000526433 GRAPQ13588 217 aa20.6■□□□□ 0.89
SSSCA1-202ENST00000526433 UBE3BQ7Z3V4 1068 aa20.6■□□□□ 0.89
SSSCA1-202ENST00000526433 GRAPLQ8TC17 118 aaPredicted RBP20.6■□□□□ 0.89
SSSCA1-202ENST00000526433 RARSP54136 660 aaKnown RBP20.59■□□□□ 0.89
SSSCA1-202ENST00000526433 TMX4Q9H1E5 349 aaPredicted RBP20.59■□□□□ 0.89
SSSCA1-202ENST00000526433 ATP6V0A2Q9Y487 856 aa20.59■□□□□ 0.89
SSSCA1-202ENST00000526433 ALDH1L1O75891 902 aa20.58■□□□□ 0.89
SSSCA1-202ENST00000526433 CASP7P55210 303 aa20.58■□□□□ 0.89
SSSCA1-202ENST00000526433 FKBP4Q02790 459 aaKnown RBP eCLIP20.58■□□□□ 0.89
SSSCA1-202ENST00000526433 CCDC152Q4G0S7 254 aa20.58■□□□□ 0.89
SSSCA1-202ENST00000526433 SLC51AQ86UW1 340 aa20.58■□□□□ 0.89
SSSCA1-202ENST00000526433 SP8Q8IXZ3 490 aa20.58■□□□□ 0.89
SSSCA1-202ENST00000526433 CELF1Q92879 486 aaKnown RBP20.58■□□□□ 0.89
SSSCA1-202ENST00000526433 SRCIN1Q9C0H9 1055 aa20.58■□□□□ 0.89
SSSCA1-202ENST00000526433 BRPF1P55201 1214 aaPredicted RBP20.57■□□□□ 0.88
SSSCA1-202ENST00000526433 GRIPAP1Q4V328 841 aa20.57■□□□□ 0.88
SSSCA1-202ENST00000526433 CCDC85AQ96PX6 553 aaPredicted RBP20.57■□□□□ 0.88
SSSCA1-202ENST00000526433 SEC31BQ9NQW1 1179 aa20.57■□□□□ 0.88
SSSCA1-202ENST00000526433 NOB1Q9ULX3 412 aaKnown RBP20.57■□□□□ 0.88
SSSCA1-202ENST00000526433 RPS8P62241 208 aaKnown RBP20.56■□□□□ 0.88
SSSCA1-202ENST00000526433 TTLL11Q8NHH1 800 aa20.56■□□□□ 0.88
SSSCA1-202ENST00000526433 ZNF526Q8TF50 670 aaPredicted RBP20.56■□□□□ 0.88
SSSCA1-202ENST00000526433 PLA2G12BQ9BX93 195 aa20.56■□□□□ 0.88
SSSCA1-202ENST00000526433 CTSWP56202 376 aa20.55■□□□□ 0.88
SSSCA1-202ENST00000526433 TMC4Q7Z404 712 aa20.55■□□□□ 0.88
SSSCA1-202ENST00000526433 PSMD1Q99460 953 aa20.55■□□□□ 0.88
SSSCA1-202ENST00000526433 ZNF277Q9NRM2 450 aaPredicted RBP20.55■□□□□ 0.88
SSSCA1-202ENST00000526433 C9orf78Q9NZ63 289 aaPredicted RBP20.55■□□□□ 0.88
SSSCA1-202ENST00000526433 DICER1Q9UPY3 1922 aaKnown RBP20.55■□□□□ 0.88
SSSCA1-202ENST00000526433 GRM8O00222 908 aa20.54■□□□□ 0.88
SSSCA1-202ENST00000526433 SNED1Q8TER0 1413 aa20.53■□□□□ 0.88
SSSCA1-202ENST00000526433 MYH3P11055 1940 aa20.53■□□□□ 0.88
SSSCA1-202ENST00000526433 GPBP1L1Q9HC44 474 aaPredicted RBP20.53■□□□□ 0.88
SSSCA1-202ENST00000526433 CSF1RP07333 972 aa20.52■□□□□ 0.88
SSSCA1-202ENST00000526433 IARSP41252 1262 aaKnown RBP20.52■□□□□ 0.88
SSSCA1-202ENST00000526433 MPNDQ8N594 471 aa20.52■□□□□ 0.88
SSSCA1-202ENST00000526433 GREM2Q9H772 168 aa20.52■□□□□ 0.88
SSSCA1-202ENST00000526433 ZC3H4Q9UPT8 1303 aaKnown RBP20.52■□□□□ 0.87
SSSCA1-202ENST00000526433 BCAR3O75815 825 aa20.51■□□□□ 0.87
SSSCA1-202ENST00000526433 DPP8Q6V1X1 898 aaPredicted RBP20.51■□□□□ 0.87
SSSCA1-202ENST00000526433 API5Q9BZZ5 524 aaKnown RBP20.51■□□□□ 0.87
SSSCA1-202ENST00000526433 FOXO4P98177 505 aa20.5■□□□□ 0.87
SSSCA1-202ENST00000526433 ANKRD18AQ8IVF6 992 aa20.5■□□□□ 0.87
SSSCA1-202ENST00000526433 ARHGAP45Q92619 1136 aa20.5■□□□□ 0.87
SSSCA1-202ENST00000526433 COL4A1P02462 1669 aa20.5■□□□□ 0.87
SSSCA1-202ENST00000526433 RTL9Q8NET4 1388 aa20.49■□□□□ 0.87
SSSCA1-202ENST00000526433 EPHA10Q5JZY3 1008 aa20.49■□□□□ 0.87
SSSCA1-202ENST00000526433 SUPT20HQ8NEM7 779 aa20.49■□□□□ 0.87
SSSCA1-202ENST00000526433 CDC5LQ99459 802 aaKnown RBP20.49■□□□□ 0.87
SSSCA1-202ENST00000526433 RTFDC1Q9BY42 306 aaPredicted RBP20.49■□□□□ 0.87
SSSCA1-202ENST00000526433 NSFL1CQ9UNZ2 370 aaKnown RBP20.49■□□□□ 0.87
SSSCA1-202ENST00000526433 KIF16BQ96L93 1317 aa20.49■□□□□ 0.87
SSSCA1-202ENST00000526433 GLTPD2A6NH11 291 aa20.48■□□□□ 0.87
SSSCA1-202ENST00000526433 IPO8O15397 1037 aaKnown RBP20.48■□□□□ 0.87
SSSCA1-202ENST00000526433 NBPF7P0C2Y1 421 aaPredicted RBP20.48■□□□□ 0.87
SSSCA1-202ENST00000526433 UTYO14607 1347 aa20.48■□□□□ 0.87
SSSCA1-202ENST00000526433 KDM2BQ8NHM5 1336 aa20.48■□□□□ 0.87
SSSCA1-202ENST00000526433 ITGA6P23229 1130 aa20.47■□□□□ 0.87
SSSCA1-202ENST00000526433 CCT4P50991 539 aaKnown RBP20.47■□□□□ 0.87
SSSCA1-202ENST00000526433 GPSM2P81274 684 aa20.47■□□□□ 0.87
SSSCA1-202ENST00000526433 DPY19L2Q6NUT2 758 aa20.47■□□□□ 0.87
SSSCA1-202ENST00000526433 LMBR1LQ6UX01 489 aa20.47■□□□□ 0.87
SSSCA1-202ENST00000526433 LARGE2Q8N3Y3 721 aa20.47■□□□□ 0.87
SSSCA1-202ENST00000526433 USP44Q9H0E7 712 aa20.47■□□□□ 0.87
SSSCA1-202ENST00000526433 VPS33BQ9H267 617 aa20.47■□□□□ 0.87
SSSCA1-202ENST00000526433 FAM161AQ3B820 660 aa20.46■□□□□ 0.87
SSSCA1-202ENST00000526433 JDP2Q8WYK2 163 aa20.46■□□□□ 0.87
SSSCA1-202ENST00000526433 FRAT1Q92837 279 aaPredicted RBP20.46■□□□□ 0.87
SSSCA1-202ENST00000526433 SUCLG2Q96I99 432 aa20.46■□□□□ 0.87
SSSCA1-202ENST00000526433 CHMP3Q9Y3E7 222 aa20.46■□□□□ 0.87
SSSCA1-202ENST00000526433 TIAM2Q8IVF5 1701 aa20.46■□□□□ 0.87
SSSCA1-202ENST00000526433 PPIP5K2O43314 1243 aa20.45■□□□□ 0.86
SSSCA1-202ENST00000526433 KAZALD1Q96I82 304 aa20.45■□□□□ 0.86
SSSCA1-202ENST00000526433 NMRK2Q9NPI5 230 aa20.45■□□□□ 0.86
SSSCA1-202ENST00000526433 BSDC1Q9NW68 430 aaPredicted RBP20.45■□□□□ 0.86
SSSCA1-202ENST00000526433 LRRC37AA6NMS7 1700 aa20.44■□□□□ 0.86
SSSCA1-202ENST00000526433 ANKRD18BA2A2Z9 1011 aa20.44■□□□□ 0.86
SSSCA1-202ENST00000526433 C6orf229H3BNL8 230 aa20.44■□□□□ 0.86
SSSCA1-202ENST00000526433 FZD9O00144 591 aa20.44■□□□□ 0.86
SSSCA1-202ENST00000526433 IGHMBP2P38935 993 aaKnown RBP20.44■□□□□ 0.86
SSSCA1-202ENST00000526433 AOC3Q16853 763 aa20.44■□□□□ 0.86
SSSCA1-202ENST00000526433 RRAGCQ9HB90 399 aa20.44■□□□□ 0.86
SSSCA1-202ENST00000526433 POLLQ9UGP5 575 aa20.44■□□□□ 0.86
SSSCA1-202ENST00000526433 IFIT5Q13325 482 aaKnown RBP20.43■□□□□ 0.86
SSSCA1-202ENST00000526433 ATF7IPQ6VMQ6 1270 aa20.43■□□□□ 0.86
SSSCA1-202ENST00000526433 PODXL2Q9NZ53 605 aa20.43■□□□□ 0.86
SSSCA1-202ENST00000526433 ANKIB1Q9P2G1 1089 aa20.43■□□□□ 0.86
SSSCA1-202ENST00000526433 KIF3CO14782 793 aa20.42■□□□□ 0.86
SSSCA1-202ENST00000526433 DDNO94850 711 aaPredicted RBP20.42■□□□□ 0.86
SSSCA1-202ENST00000526433 KIAA2012Q0VF49 1180 aa20.42■□□□□ 0.86
SSSCA1-202ENST00000526433 INTS3Q68E01 1043 aaKnown RBP20.42■□□□□ 0.86
SSSCA1-202ENST00000526433 NIM1KQ8IY84 436 aa20.42■□□□□ 0.86
SSSCA1-202ENST00000526433 TBC1D16Q8TBP0 767 aa20.42■□□□□ 0.86
SSSCA1-202ENST00000526433 MPHOSPH8Q99549 860 aa20.42■□□□□ 0.86
SSSCA1-202ENST00000526433 MINPP1Q9UNW1 487 aa20.42■□□□□ 0.86
SSSCA1-202ENST00000526433 TNNQ9UQP3 1299 aa20.42■□□□□ 0.86
SSSCA1-202ENST00000526433 TRIM27P14373 513 aa20.41■□□□□ 0.86
SSSCA1-202ENST00000526433 WASHC4Q2M389 1173 aa20.41■□□□□ 0.86
SSSCA1-202ENST00000526433 CCDC57Q2TAC2 916 aa20.41■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms