RNA–Protein interactions for RNA: ENST00000470076.1

COL7A1-208, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 651 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-208ENST00000470076 MPNDQ8N594 471 aa22.69■■□□□ 1.22
COL7A1-208ENST00000470076 LTBP1Q14766 1721 aa22.68■■□□□ 1.22
COL7A1-208ENST00000470076 DDX60Q8IY21 1712 aaKnown RBP22.68■■□□□ 1.22
COL7A1-208ENST00000470076 MAP1SQ66K74 1059 aaPredicted RBP22.68■■□□□ 1.22
COL7A1-208ENST00000470076 ZNRF3Q9ULT6 936 aa22.68■■□□□ 1.22
COL7A1-208ENST00000470076 TAF1P21675 1872 aa22.67■■□□□ 1.22
COL7A1-208ENST00000470076 TRIM28Q13263 835 aaKnown RBP22.67■■□□□ 1.22
COL7A1-208ENST00000470076 ATP5J2-PTCD1G3V325 749 aa22.66■■□□□ 1.22
COL7A1-208ENST00000470076 EPS15P42566 896 aa22.66■■□□□ 1.22
COL7A1-208ENST00000470076 FAM89AQ96GI7 184 aa22.66■■□□□ 1.22
COL7A1-208ENST00000470076 KIAA2012Q0VF49 1180 aa22.65■■□□□ 1.22
COL7A1-208ENST00000470076 SF3B3Q15393 1217 aaKnown RBP22.65■■□□□ 1.22
COL7A1-208ENST00000470076 USP50Q70EL3 339 aaPredicted RBP22.65■■□□□ 1.22
COL7A1-208ENST00000470076 ZNF428Q96B54 188 aa22.65■■□□□ 1.22
COL7A1-208ENST00000470076 LRRC37AA6NMS7 1700 aa22.65■■□□□ 1.22
COL7A1-208ENST00000470076 CXCL9Q07325 125 aa22.64■■□□□ 1.21
COL7A1-208ENST00000470076 GOLGA2Q08379 1002 aa22.64■■□□□ 1.21
COL7A1-208ENST00000470076 RIC3Q7Z5B4 369 aa22.64■■□□□ 1.21
COL7A1-208ENST00000470076 CHMP4AQ9BY43 222 aa22.64■■□□□ 1.21
COL7A1-208ENST00000470076 GPRC5DQ9NZD1 345 aa22.63■■□□□ 1.21
COL7A1-208ENST00000470076 ELL2O00472 640 aaPredicted RBP22.62■■□□□ 1.21
COL7A1-208ENST00000470076 ADARB2Q9NS39 739 aaKnown RBP22.62■■□□□ 1.21
COL7A1-208ENST00000470076 IRS4O14654 1257 aaPredicted RBP22.61■■□□□ 1.21
COL7A1-208ENST00000470076 CIAPIN1Q6FI81 312 aa22.61■■□□□ 1.21
COL7A1-208ENST00000470076 PHAXQ9H814 394 aaKnown RBP22.61■■□□□ 1.21
COL7A1-208ENST00000470076 DUOX1Q9NRD9 1551 aa22.61■■□□□ 1.21
COL7A1-208ENST00000470076 CDHR2Q9BYE9 1310 aa22.6■■□□□ 1.21
COL7A1-208ENST00000470076 RASSF10A6NK89 507 aa22.6■■□□□ 1.21
COL7A1-208ENST00000470076 HSP90B1P14625 803 aaKnown RBP22.6■■□□□ 1.21
COL7A1-208ENST00000470076 VEGFBP49765 207 aa22.6■■□□□ 1.21
COL7A1-208ENST00000470076 TNIP1Q15025 636 aa22.6■■□□□ 1.21
COL7A1-208ENST00000470076 RTL5Q5HYW3 569 aaPredicted RBP22.6■■□□□ 1.21
COL7A1-208ENST00000470076 TNS4Q8IZW8 715 aa22.6■■□□□ 1.21
COL7A1-208ENST00000470076 CELF1Q92879 486 aaKnown RBP22.6■■□□□ 1.21
COL7A1-208ENST00000470076 GMPSP49915 693 aaPredicted RBP22.59■■□□□ 1.21
COL7A1-208ENST00000470076 ZBTB38Q8NAP3 1195 aaPredicted RBP22.59■■□□□ 1.21
COL7A1-208ENST00000470076 C8orf58Q8NAV2 365 aa22.59■■□□□ 1.21
COL7A1-208ENST00000470076 DEFB115Q30KQ5 88 aa22.58■■□□□ 1.21
COL7A1-208ENST00000470076 CCDC30Q5VVM6 783 aa22.58■■□□□ 1.21
COL7A1-208ENST00000470076 NSFL1CQ9UNZ2 370 aaKnown RBP22.58■■□□□ 1.21
COL7A1-208ENST00000470076 RAD17O75943 681 aa22.57■■□□□ 1.2
COL7A1-208ENST00000470076 DDX58O95786 925 aaKnown RBP22.57■■□□□ 1.2
COL7A1-208ENST00000470076 WASHC4Q2M389 1173 aa22.57■■□□□ 1.2
COL7A1-208ENST00000470076 CCDC191Q8NCU4 936 aa22.57■■□□□ 1.2
COL7A1-208ENST00000470076 MYD88Q99836 296 aa22.57■■□□□ 1.2
COL7A1-208ENST00000470076 BCL2L13Q9BXK5 485 aa22.57■■□□□ 1.2
COL7A1-208ENST00000470076 ABT1Q9ULW3 272 aaKnown RBP22.57■■□□□ 1.2
COL7A1-208ENST00000470076 TRPM7Q96QT4 1865 aa22.57■■□□□ 1.2
COL7A1-208ENST00000470076 RPS8P62241 208 aaKnown RBP22.56■■□□□ 1.2
COL7A1-208ENST00000470076 YDJCA8MPS7 323 aa22.55■■□□□ 1.2
COL7A1-208ENST00000470076 C6orf229H3BNL8 230 aa22.54■■□□□ 1.2
COL7A1-208ENST00000470076 PCCAP05165 728 aaPredicted RBP22.54■■□□□ 1.2
COL7A1-208ENST00000470076 CCDC27Q2M243 656 aa22.54■■□□□ 1.2
COL7A1-208ENST00000470076 AIDAQ96BJ3 306 aa22.54■■□□□ 1.2
COL7A1-208ENST00000470076 METTL22Q9BUU2 404 aaPredicted RBP22.54■■□□□ 1.2
COL7A1-208ENST00000470076 CWC25Q9NXE8 425 aaPredicted RBP22.54■■□□□ 1.2
COL7A1-208ENST00000470076 COL4A1P02462 1669 aa22.54■■□□□ 1.2
COL7A1-208ENST00000470076 FOXN1O15353 648 aa22.53■■□□□ 1.2
COL7A1-208ENST00000470076 GPSM2P81274 684 aa22.53■■□□□ 1.2
COL7A1-208ENST00000470076 CCDC184Q52MB2 194 aa22.53■■□□□ 1.2
COL7A1-208ENST00000470076 ZC3H15Q8WU90 426 aaKnown RBP22.53■■□□□ 1.2
COL7A1-208ENST00000470076 EYA3Q99504 573 aa22.53■■□□□ 1.2
COL7A1-208ENST00000470076 POLLQ9UGP5 575 aa22.53■■□□□ 1.2
COL7A1-208ENST00000470076 PGAP2Q9UHJ9 254 aa22.53■■□□□ 1.2
COL7A1-208ENST00000470076 TRAF5O00463 557 aa22.52■■□□□ 1.2
COL7A1-208ENST00000470076 PDE8AO60658 829 aa22.52■■□□□ 1.2
COL7A1-208ENST00000470076 FMR1Q06787 632 aaKnown RBP eCLIP22.52■■□□□ 1.2
COL7A1-208ENST00000470076 CCDC152Q4G0S7 254 aa22.52■■□□□ 1.2
COL7A1-208ENST00000470076 TSPYL6Q8N831 410 aa22.52■■□□□ 1.2
COL7A1-208ENST00000470076 CNOT7Q9UIV1 285 aaKnown RBP22.52■■□□□ 1.2
COL7A1-208ENST00000470076 WDR33Q9C0J8 1336 aaKnown RBP22.52■■□□□ 1.2
COL7A1-208ENST00000470076 H7C1D1 291 aa22.51■■□□□ 1.19
COL7A1-208ENST00000470076 RIMBP2O15034 1052 aa22.51■■□□□ 1.19
COL7A1-208ENST00000470076 CST9Q5W186 159 aa22.51■■□□□ 1.19
COL7A1-208ENST00000470076 TBC1D16Q8TBP0 767 aa22.51■■□□□ 1.19
COL7A1-208ENST00000470076 DPF2Q92785 391 aa22.51■■□□□ 1.19
COL7A1-208ENST00000470076 TSR2Q969E8 191 aaKnown RBP22.51■■□□□ 1.19
COL7A1-208ENST00000470076 DBNDD1Q9H9R9 158 aa22.51■■□□□ 1.19
COL7A1-208ENST00000470076 SEC31BQ9NQW1 1179 aa22.51■■□□□ 1.19
COL7A1-208ENST00000470076 WBP1LQ9NX94 342 aa22.51■■□□□ 1.19
COL7A1-208ENST00000470076 CTCFP49711 727 aaPredicted RBP22.5■■□□□ 1.19
COL7A1-208ENST00000470076 WWC1Q8IX03 1113 aa22.5■■□□□ 1.19
COL7A1-208ENST00000470076 STK31Q9BXU1 1019 aa22.5■■□□□ 1.19
COL7A1-208ENST00000470076 PRDM10Q9NQV6 1147 aa22.5■■□□□ 1.19
COL7A1-208ENST00000470076 PODXL2Q9NZ53 605 aa22.5■■□□□ 1.19
COL7A1-208ENST00000470076 MAP3K2Q9Y2U5 619 aa22.5■■□□□ 1.19
COL7A1-208ENST00000470076 PSMD14O00487 310 aa22.49■■□□□ 1.19
COL7A1-208ENST00000470076 ECE1P42892 770 aa22.49■■□□□ 1.19
COL7A1-208ENST00000470076 HIRAP54198 1017 aaPredicted RBP22.49■■□□□ 1.19
COL7A1-208ENST00000470076 MAP2K1Q02750 393 aaPredicted RBP22.49■■□□□ 1.19
COL7A1-208ENST00000470076 NCBP3Q53F19 620 aaKnown RBP22.49■■□□□ 1.19
COL7A1-208ENST00000470076 KSR2Q6VAB6 950 aa22.49■■□□□ 1.19
COL7A1-208ENST00000470076 PI4KAP2A4QPH2 592 aa22.48■■□□□ 1.19
COL7A1-208ENST00000470076 ECE2O60344 883 aa22.48■■□□□ 1.19
COL7A1-208ENST00000470076 MICALL2Q8IY33 904 aa22.48■■□□□ 1.19
COL7A1-208ENST00000470076 PI4KAP1Q8N8J0 262 aa22.48■■□□□ 1.19
COL7A1-208ENST00000470076 TRPM4Q8TD43 1214 aa22.48■■□□□ 1.19
COL7A1-208ENST00000470076 GLIS2Q9BZE0 524 aaPredicted RBP22.48■■□□□ 1.19
COL7A1-208ENST00000470076 ZC3H12CQ9C0D7 883 aaKnown RBP22.48■■□□□ 1.19
COL7A1-208ENST00000470076 ZBTB12Q9Y330 459 aaPredicted RBP22.48■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 80.7 ms