RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 SNED1Q8TER0 1413 aa22.57■■□□□ 1.2
COL7A1-206ENST00000466591 IRS4O14654 1257 aaPredicted RBP22.57■■□□□ 1.2
COL7A1-206ENST00000466591 SLC51AQ86UW1 340 aa22.57■■□□□ 1.2
COL7A1-206ENST00000466591 MYD88Q99836 296 aa22.57■■□□□ 1.2
COL7A1-206ENST00000466591 BCL2L13Q9BXK5 485 aa22.57■■□□□ 1.2
COL7A1-206ENST00000466591 ZNRF3Q9ULT6 936 aa22.57■■□□□ 1.2
COL7A1-206ENST00000466591 MAP1SQ66K74 1059 aaPredicted RBP22.56■■□□□ 1.2
COL7A1-206ENST00000466591 CNTROBQ8N137 903 aa22.56■■□□□ 1.2
COL7A1-206ENST00000466591 PHAXQ9H814 394 aaKnown RBP22.56■■□□□ 1.2
COL7A1-206ENST00000466591 LAMB2P55268 1798 aa22.55■■□□□ 1.2
COL7A1-206ENST00000466591 TMEM88BA6NKF7 163 aa22.55■■□□□ 1.2
COL7A1-206ENST00000466591 C8orf58Q8NAV2 365 aa22.55■■□□□ 1.2
COL7A1-206ENST00000466591 NSFL1CQ9UNZ2 370 aaKnown RBP22.55■■□□□ 1.2
COL7A1-206ENST00000466591 C6orf229H3BNL8 230 aa22.54■■□□□ 1.2
COL7A1-206ENST00000466591 ZNF316A6NFI3 1004 aaPredicted RBP22.53■■□□□ 1.2
COL7A1-206ENST00000466591 G3V3G9 751 aa22.53■■□□□ 1.2
COL7A1-206ENST00000466591 TNIP1Q15025 636 aa22.53■■□□□ 1.2
COL7A1-206ENST00000466591 DCAF8Q5TAQ9 597 aa22.53■■□□□ 1.2
COL7A1-206ENST00000466591 CIAPIN1Q6FI81 312 aa22.53■■□□□ 1.2
COL7A1-206ENST00000466591 TSR2Q969E8 191 aaKnown RBP22.53■■□□□ 1.2
COL7A1-206ENST00000466591 RTFDC1Q9BY42 306 aaPredicted RBP22.53■■□□□ 1.2
COL7A1-206ENST00000466591 CWC25Q9NXE8 425 aaPredicted RBP22.53■■□□□ 1.2
COL7A1-206ENST00000466591 COL4A5P29400 1685 aa22.52■■□□□ 1.2
COL7A1-206ENST00000466591 HSPA1AP0DMV8 641 aaKnown RBP22.52■■□□□ 1.2
COL7A1-206ENST00000466591 HSPA1BP0DMV9 641 aaKnown RBP22.52■■□□□ 1.2
COL7A1-206ENST00000466591 KIAA2012Q0VF49 1180 aa22.52■■□□□ 1.2
COL7A1-206ENST00000466591 NEXNQ0ZGT2 675 aa22.52■■□□□ 1.2
COL7A1-206ENST00000466591 USP50Q70EL3 339 aaPredicted RBP22.52■■□□□ 1.2
COL7A1-206ENST00000466591 ZBTB38Q8NAP3 1195 aaPredicted RBP22.52■■□□□ 1.2
COL7A1-206ENST00000466591 ABT1Q9ULW3 272 aaKnown RBP22.52■■□□□ 1.2
COL7A1-206ENST00000466591 RAD17O75943 681 aa22.51■■□□□ 1.19
COL7A1-206ENST00000466591 EPS15P42566 896 aa22.51■■□□□ 1.19
COL7A1-206ENST00000466591 SCNN1DP51172 638 aa22.51■■□□□ 1.19
COL7A1-206ENST00000466591 TRIM28Q13263 835 aaKnown RBP22.51■■□□□ 1.19
COL7A1-206ENST00000466591 SF3B3Q15393 1217 aaKnown RBP22.51■■□□□ 1.19
COL7A1-206ENST00000466591 WASHC4Q2M389 1173 aa22.51■■□□□ 1.19
COL7A1-206ENST00000466591 CCDC152Q4G0S7 254 aa22.51■■□□□ 1.19
COL7A1-206ENST00000466591 CCDC184Q52MB2 194 aa22.51■■□□□ 1.19
COL7A1-206ENST00000466591 CCDC191Q8NCU4 936 aa22.51■■□□□ 1.19
COL7A1-206ENST00000466591 SALL2Q9Y467 1007 aaPredicted RBP22.51■■□□□ 1.19
COL7A1-206ENST00000466591 PASKQ96RG2 1323 aa22.51■■□□□ 1.19
COL7A1-206ENST00000466591 RIMBP2O15034 1052 aa22.5■■□□□ 1.19
COL7A1-206ENST00000466591 CXCL9Q07325 125 aa22.5■■□□□ 1.19
COL7A1-206ENST00000466591 PAXIP1Q6ZW49 1069 aaPredicted RBP22.5■■□□□ 1.19
COL7A1-206ENST00000466591 CELF1Q92879 486 aaKnown RBP22.5■■□□□ 1.19
COL7A1-206ENST00000466591 EYA3Q99504 573 aa22.5■■□□□ 1.19
COL7A1-206ENST00000466591 ADARB2Q9NS39 739 aaKnown RBP22.5■■□□□ 1.19
COL7A1-206ENST00000466591 MAP3K2Q9Y2U5 619 aa22.5■■□□□ 1.19
COL7A1-206ENST00000466591 DDX60Q8IY21 1712 aaKnown RBP22.5■■□□□ 1.19
COL7A1-206ENST00000466591 ITGBL1O95965 494 aaPredicted RBP22.49■■□□□ 1.19
COL7A1-206ENST00000466591 GMPSP49915 693 aaPredicted RBP22.49■■□□□ 1.19
COL7A1-206ENST00000466591 TWISTNBQ3B726 338 aaPredicted RBP22.49■■□□□ 1.19
COL7A1-206ENST00000466591 ANKIB1Q9P2G1 1089 aa22.49■■□□□ 1.19
COL7A1-206ENST00000466591 RPS8P62241 208 aaKnown RBP22.48■■□□□ 1.19
COL7A1-206ENST00000466591 CCDC27Q2M243 656 aa22.48■■□□□ 1.19
COL7A1-206ENST00000466591 WWC1Q8IX03 1113 aa22.48■■□□□ 1.19
COL7A1-206ENST00000466591 AIDAQ96BJ3 306 aa22.48■■□□□ 1.19
COL7A1-206ENST00000466591 CCDC85AQ96PX6 553 aaPredicted RBP22.48■■□□□ 1.19
COL7A1-206ENST00000466591 METTL22Q9BUU2 404 aaPredicted RBP22.48■■□□□ 1.19
COL7A1-206ENST00000466591 GPRC5DQ9NZD1 345 aa22.48■■□□□ 1.19
COL7A1-206ENST00000466591 CNTNAP1P78357 1384 aa22.48■■□□□ 1.19
COL7A1-206ENST00000466591 TSPYL6Q8N831 410 aa22.47■■□□□ 1.19
COL7A1-206ENST00000466591 H7C1D1 291 aa22.46■■□□□ 1.19
COL7A1-206ENST00000466591 PDE8AO60658 829 aa22.46■■□□□ 1.19
COL7A1-206ENST00000466591 PCCAP05165 728 aaPredicted RBP22.46■■□□□ 1.19
COL7A1-206ENST00000466591 JARID2Q92833 1246 aaPredicted RBP22.46■■□□□ 1.19
COL7A1-206ENST00000466591 TAF1P21675 1872 aa22.45■■□□□ 1.19
COL7A1-206ENST00000466591 GPSM2P81274 684 aa22.45■■□□□ 1.18
COL7A1-206ENST00000466591 KSR2Q6VAB6 950 aa22.45■■□□□ 1.18
COL7A1-206ENST00000466591 ZC3H12CQ9C0D7 883 aaKnown RBP22.45■■□□□ 1.18
COL7A1-206ENST00000466591 DBNDD1Q9H9R9 158 aa22.45■■□□□ 1.18
COL7A1-206ENST00000466591 CDHR2Q9BYE9 1310 aa22.45■■□□□ 1.18
COL7A1-206ENST00000466591 PI4KAP2A4QPH2 592 aa22.44■■□□□ 1.18
COL7A1-206ENST00000466591 GRM1Q13255 1194 aa22.44■■□□□ 1.18
COL7A1-206ENST00000466591 IL16Q14005 1332 aa22.44■■□□□ 1.18
COL7A1-206ENST00000466591 DEFB115Q30KQ5 88 aa22.44■■□□□ 1.18
COL7A1-206ENST00000466591 TNS4Q8IZW8 715 aa22.44■■□□□ 1.18
COL7A1-206ENST00000466591 PI4KAP1Q8N8J0 262 aa22.44■■□□□ 1.18
COL7A1-206ENST00000466591 ADAMTSL1Q8N6G6 1762 aa22.43■■□□□ 1.18
COL7A1-206ENST00000466591 UFL1O94874 794 aa22.43■■□□□ 1.18
COL7A1-206ENST00000466591 SLC4A2P04920 1241 aa22.43■■□□□ 1.18
COL7A1-206ENST00000466591 COL13A1Q5TAT6 717 aaPredicted RBP22.43■■□□□ 1.18
COL7A1-206ENST00000466591 ANKRD18AQ8IVF6 992 aa22.43■■□□□ 1.18
COL7A1-206ENST00000466591 SEC31BQ9NQW1 1179 aa22.43■■□□□ 1.18
COL7A1-206ENST00000466591 LTBP1Q14766 1721 aa22.43■■□□□ 1.18
COL7A1-206ENST00000466591 VEGFBP49765 207 aa22.42■■□□□ 1.18
COL7A1-206ENST00000466591 DOK7Q18PE1 504 aa22.42■■□□□ 1.18
COL7A1-206ENST00000466591 CDC5LQ99459 802 aaKnown RBP22.42■■□□□ 1.18
COL7A1-206ENST00000466591 CNOT7Q9UIV1 285 aaKnown RBP22.42■■□□□ 1.18
COL7A1-206ENST00000466591 GGA1Q9UJY5 639 aa22.42■■□□□ 1.18
COL7A1-206ENST00000466591 LRRC37AA6NMS7 1700 aa22.42■■□□□ 1.18
COL7A1-206ENST00000466591 ECE2O60344 883 aa22.41■■□□□ 1.18
COL7A1-206ENST00000466591 FKBP5Q13451 457 aaPredicted RBP22.41■■□□□ 1.18
COL7A1-206ENST00000466591 POLLQ9UGP5 575 aa22.41■■□□□ 1.18
COL7A1-206ENST00000466591 MICALL2Q8IY33 904 aa22.4■■□□□ 1.18
COL7A1-206ENST00000466591 FAM9BQ8IZU0 186 aa22.4■■□□□ 1.18
COL7A1-206ENST00000466591 TBC1D16Q8TBP0 767 aa22.4■■□□□ 1.18
COL7A1-206ENST00000466591 GPR101Q96P66 508 aaPredicted RBP22.4■■□□□ 1.18
COL7A1-206ENST00000466591 ZNF408Q9H9D4 720 aa22.4■■□□□ 1.18
COL7A1-206ENST00000466591 YDJCA8MPS7 323 aa22.39■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms