RNA–Protein interactions for RNA: ENST00000460912.6

SYNE1-215, Transcript of spectrin repeat containing nuclear envelope protein 1, human

TSL 1 (best)

Gene SYNE1, Length 3,664 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE1-215	ENST00000460912	CWF19L2	Q2TBE0	894 aa	Known RBP	10.64	□□□□□ -0.71
SYNE1-215	ENST00000460912	NEK4	P51957	841 aa		10.63	□□□□□ -0.71
SYNE1-215	ENST00000460912	HS1BP3	Q53T59	392 aa		10.63	□□□□□ -0.71
SYNE1-215	ENST00000460912	C1orf141	Q5JVX7	400 aa		10.63	□□□□□ -0.71
SYNE1-215	ENST00000460912	BICC1	Q9H694	974 aa	Known RBP	10.63	□□□□□ -0.71
SYNE1-215	ENST00000460912	COPRS	Q9NQ92	184 aa		10.63	□□□□□ -0.71
SYNE1-215	ENST00000460912	ADCK5	Q3MIX3	580 aa		10.63	□□□□□ -0.71
SYNE1-215	ENST00000460912	TLR7	Q9NYK1	1049 aa	Known RBP	10.63	□□□□□ -0.71
SYNE1-215	ENST00000460912	ZNF609	O15014	1411 aa		10.63	□□□□□ -0.71
SYNE1-215	ENST00000460912	APBB1	O00213	710 aa		10.63	□□□□□ -0.71
SYNE1-215	ENST00000460912	RGL2	O15211	777 aa		10.63	□□□□□ -0.71
SYNE1-215	ENST00000460912	GCKR	Q14397	625 aa		10.63	□□□□□ -0.71
SYNE1-215	ENST00000460912	TICAM2	Q86XR7	235 aa		10.63	□□□□□ -0.71
SYNE1-215	ENST00000460912	METTL22	Q9BUU2	404 aa	Predicted RBP	10.63	□□□□□ -0.71
SYNE1-215	ENST00000460912	SURF6	O75683	361 aa	Known RBP	10.62	□□□□□ -0.71
SYNE1-215	ENST00000460912	GLRX3	O76003	335 aa	Known RBP	10.62	□□□□□ -0.71
SYNE1-215	ENST00000460912	HSP90AB4P	Q58FF6	505 aa		10.62	□□□□□ -0.71
SYNE1-215	ENST00000460912	PALLD	Q8WX93	1383 aa		10.62	□□□□□ -0.71
SYNE1-215	ENST00000460912	NUTM2B	A6NNL0	878 aa	Predicted RBP	10.62	□□□□□ -0.71
SYNE1-215	ENST00000460912	NUTM2E	B1AL46	878 aa	Predicted RBP	10.62	□□□□□ -0.71
SYNE1-215	ENST00000460912	EVA1C	P58658	441 aa		10.62	□□□□□ -0.71
SYNE1-215	ENST00000460912	VPS53	Q5VIR6	699 aa		10.62	□□□□□ -0.71
SYNE1-215	ENST00000460912	INTS5	Q6P9B9	1019 aa	Known RBP	10.62	□□□□□ -0.71
SYNE1-215	ENST00000460912	LRSAM1	Q6UWE0	723 aa		10.62	□□□□□ -0.71
SYNE1-215	ENST00000460912	NUTM2A	Q8IVF1	878 aa	Predicted RBP	10.62	□□□□□ -0.71
SYNE1-215	ENST00000460912	PRIM1	P49642	420 aa	Known RBP	10.62	□□□□□ -0.71
SYNE1-215	ENST00000460912	AK2	P54819	239 aa		10.62	□□□□□ -0.71
SYNE1-215	ENST00000460912	FOXO4	P98177	505 aa		10.62	□□□□□ -0.71
SYNE1-215	ENST00000460912	PTPN12	Q05209	780 aa	Known RBP	10.62	□□□□□ -0.71
SYNE1-215	ENST00000460912	MCTP1	Q6DN14	999 aa		10.62	□□□□□ -0.71
SYNE1-215	ENST00000460912	ECHDC1	Q9NTX5	307 aa		10.62	□□□□□ -0.71
SYNE1-215	ENST00000460912	CYP19A1	P11511	503 aa	Predicted RBP	10.61	□□□□□ -0.71
SYNE1-215	ENST00000460912	TAF6L	Q9Y6J9	622 aa		10.61	□□□□□ -0.71
SYNE1-215	ENST00000460912	CCDC173	Q0VFZ6	552 aa		10.61	□□□□□ -0.71
SYNE1-215	ENST00000460912	PA2G4	Q9UQ80	394 aa	Known RBP	10.61	□□□□□ -0.71
SYNE1-215	ENST00000460912	CCDC171	Q6TFL3	1326 aa		10.61	□□□□□ -0.71
SYNE1-215	ENST00000460912	CSB-PGBD3	P0DP91	1061 aa		10.61	□□□□□ -0.71
SYNE1-215	ENST00000460912	ASAP1	Q9ULH1	1129 aa		10.61	□□□□□ -0.71
SYNE1-215	ENST00000460912	RIC1	Q4ADV7	1423 aa		10.6	□□□□□ -0.71
SYNE1-215	ENST00000460912	EXOC5	O00471	708 aa		10.6	□□□□□ -0.71
SYNE1-215	ENST00000460912	DDB1	Q16531	1140 aa		10.6	□□□□□ -0.71
SYNE1-215	ENST00000460912	EVI5L	Q96CN4	794 aa		10.6	□□□□□ -0.71
SYNE1-215	ENST00000460912	FAM98C	Q17RN3	349 aa	Known RBP	10.6	□□□□□ -0.71
SYNE1-215	ENST00000460912	POTEA	Q6S8J7	498 aa		10.6	□□□□□ -0.71
SYNE1-215	ENST00000460912	ERC1	Q8IUD2	1116 aa		10.6	□□□□□ -0.71
SYNE1-215	ENST00000460912	CNTROB	Q8N137	903 aa		10.6	□□□□□ -0.71
SYNE1-215	ENST00000460912	NGLY1	Q96IV0	654 aa		10.6	□□□□□ -0.71
SYNE1-215	ENST00000460912	RBM27	Q9P2N5	1060 aa	Known RBP	10.6	□□□□□ -0.71
SYNE1-215	ENST00000460912	CNTNAP4	Q9C0A0	1308 aa		10.59	□□□□□ -0.71
SYNE1-215	ENST00000460912	ZBTB7C	A1YPR0	619 aa		10.59	□□□□□ -0.71
SYNE1-215	ENST00000460912	TOB2	Q14106	344 aa	Predicted RBP	10.59	□□□□□ -0.71
SYNE1-215	ENST00000460912	AGXT2	Q9BYV1	514 aa		10.59	□□□□□ -0.71
SYNE1-215	ENST00000460912		H7C1W4	665 aa		10.59	□□□□□ -0.71
SYNE1-215	ENST00000460912	GADD45B	O75293	160 aa	Predicted RBP	10.59	□□□□□ -0.71
SYNE1-215	ENST00000460912	EIF2S2	P20042	333 aa	Known RBP	10.59	□□□□□ -0.71
SYNE1-215	ENST00000460912	TEF	Q10587	303 aa		10.59	□□□□□ -0.71
SYNE1-215	ENST00000460912	SLC39A6	Q13433	755 aa		10.59	□□□□□ -0.71
SYNE1-215	ENST00000460912	ITPK1	Q13572	414 aa		10.59	□□□□□ -0.71
SYNE1-215	ENST00000460912	ATG9A	Q7Z3C6	839 aa		10.59	□□□□□ -0.71
SYNE1-215	ENST00000460912	ANO2	Q9NQ90	1003 aa		10.59	□□□□□ -0.71
SYNE1-215	ENST00000460912	USP16	Q9Y5T5	823 aa		10.59	□□□□□ -0.71
SYNE1-215	ENST00000460912	ESPN	B1AK53	854 aa		10.59	□□□□□ -0.71
SYNE1-215	ENST00000460912	PDE4C	Q08493	712 aa		10.59	□□□□□ -0.71
SYNE1-215	ENST00000460912	ZNF772	Q68DY9	489 aa	Predicted RBP	10.59	□□□□□ -0.71
SYNE1-215	ENST00000460912	MTMR6	Q9Y217	621 aa		10.59	□□□□□ -0.71
SYNE1-215	ENST00000460912		A0A0D9SFI3	127 aa		10.58	□□□□□ -0.72
SYNE1-215	ENST00000460912	FOXP2	O15409	715 aa		10.58	□□□□□ -0.72
SYNE1-215	ENST00000460912	ATP5J	P18859	108 aa		10.58	□□□□□ -0.72
SYNE1-215	ENST00000460912	FBXL16	Q8N461	479 aa		10.58	□□□□□ -0.72
SYNE1-215	ENST00000460912	RILPL2	Q969X0	211 aa		10.58	□□□□□ -0.72
SYNE1-215	ENST00000460912	TAF1	P21675	1872 aa		10.58	□□□□□ -0.72
SYNE1-215	ENST00000460912	KCNQ2	O43526	872 aa		10.58	□□□□□ -0.72
SYNE1-215	ENST00000460912	ZNF500	O60304	480 aa	Predicted RBP	10.58	□□□□□ -0.72
SYNE1-215	ENST00000460912	MAP4K4	O95819	1239 aa	Predicted RBP	10.58	□□□□□ -0.72
SYNE1-215	ENST00000460912	SNRPA1	P09661	255 aa	Known RBP	10.58	□□□□□ -0.72
SYNE1-215	ENST00000460912	UPF3B	Q9BZI7	483 aa	Known RBP	10.58	□□□□□ -0.72
SYNE1-215	ENST00000460912	QTRT2	Q9H974	415 aa	Known RBP	10.58	□□□□□ -0.72
SYNE1-215	ENST00000460912	LIMCH1	Q9UPQ0	1083 aa		10.58	□□□□□ -0.72
SYNE1-215	ENST00000460912	DDX49	Q9Y6V7	483 aa	Known RBP	10.58	□□□□□ -0.72
SYNE1-215	ENST00000460912	PSME4	Q14997	1843 aa		10.58	□□□□□ -0.72
SYNE1-215	ENST00000460912	PRPF40A	O75400	957 aa	Known RBP	10.57	□□□□□ -0.72
SYNE1-215	ENST00000460912	RBM6	P78332	1123 aa	Known RBP	10.57	□□□□□ -0.72
SYNE1-215	ENST00000460912	RBM43	Q6ZSC3	357 aa	Known RBP	10.57	□□□□□ -0.72
SYNE1-215	ENST00000460912	SEPT12	Q8IYM1	358 aa		10.57	□□□□□ -0.72
SYNE1-215	ENST00000460912	FAM227B	Q96M60	508 aa		10.57	□□□□□ -0.72
SYNE1-215	ENST00000460912	FMNL2	Q96PY5	1086 aa		10.57	□□□□□ -0.72
SYNE1-215	ENST00000460912	ZMYND15	Q9H091	742 aa		10.57	□□□□□ -0.72
SYNE1-215	ENST00000460912	DBNL	Q9UJU6	430 aa	Known RBP	10.57	□□□□□ -0.72
SYNE1-215	ENST00000460912	ME3	Q16798	604 aa		10.57	□□□□□ -0.72
SYNE1-215	ENST00000460912	ZNF589	Q86UQ0	364 aa	Predicted RBP	10.57	□□□□□ -0.72
SYNE1-215	ENST00000460912	PROM2	Q8N271	834 aa		10.57	□□□□□ -0.72
SYNE1-215	ENST00000460912	SALL1	Q9NSC2	1324 aa		10.57	□□□□□ -0.72
SYNE1-215	ENST00000460912	SLC27A2	O14975	620 aa		10.57	□□□□□ -0.72
SYNE1-215	ENST00000460912	TAF5L	O75529	589 aa		10.57	□□□□□ -0.72
SYNE1-215	ENST00000460912	ZSCAN22	P10073	491 aa	Predicted RBP	10.57	□□□□□ -0.72
SYNE1-215	ENST00000460912	SYT1	P21579	422 aa		10.57	□□□□□ -0.72
SYNE1-215	ENST00000460912	CABP4	P57796	275 aa		10.57	□□□□□ -0.72
SYNE1-215	ENST00000460912	CAVIN1	Q6NZI2	390 aa	Known RBP	10.57	□□□□□ -0.72
SYNE1-215	ENST00000460912	BCL11B	Q9C0K0	894 aa	Predicted RBP	10.57	□□□□□ -0.72
SYNE1-215	ENST00000460912	TPCN1	Q9ULQ1	816 aa		10.57	□□□□□ -0.72

Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms