RNA–Protein interactions for RNA: ENST00000452047.1

CPSF4-208, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 3

Gene CPSF4, Length 687 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-208ENST00000452047 TWISTNBQ3B726 338 aaPredicted RBP16.08■□□□□ 0.16
CPSF4-208ENST00000452047 RTL5Q5HYW3 569 aaPredicted RBP16.08■□□□□ 0.16
CPSF4-208ENST00000452047 CHADLQ6NUI6 762 aa16.08■□□□□ 0.16
CPSF4-208ENST00000452047 TMC4Q7Z404 712 aa16.08■□□□□ 0.16
CPSF4-208ENST00000452047 ZBTB38Q8NAP3 1195 aaPredicted RBP16.08■□□□□ 0.16
CPSF4-208ENST00000452047 CCDC191Q8NCU4 936 aa16.08■□□□□ 0.16
CPSF4-208ENST00000452047 MYD88Q99836 296 aa16.08■□□□□ 0.16
CPSF4-208ENST00000452047 TMX4Q9H1E5 349 aaPredicted RBP16.08■□□□□ 0.16
CPSF4-208ENST00000452047 VPS33BQ9H267 617 aa16.08■□□□□ 0.16
CPSF4-208ENST00000452047 FANCIQ9NVI1 1328 aa16.08■□□□□ 0.16
CPSF4-208ENST00000452047 PPIP5K2O43314 1243 aa16.07■□□□□ 0.16
CPSF4-208ENST00000452047 DDX58O95786 925 aaKnown RBP16.07■□□□□ 0.16
CPSF4-208ENST00000452047 AOC3Q16853 763 aa16.07■□□□□ 0.16
CPSF4-208ENST00000452047 DPP8Q6V1X1 898 aaPredicted RBP16.07■□□□□ 0.16
CPSF4-208ENST00000452047 LDHDQ86WU2 507 aa16.07■□□□□ 0.16
CPSF4-208ENST00000452047 CELF1Q92879 486 aaKnown RBP16.07■□□□□ 0.16
CPSF4-208ENST00000452047 KLRG1Q96E93 195 aa16.07■□□□□ 0.16
CPSF4-208ENST00000452047 METTL22Q9BUU2 404 aaPredicted RBP16.07■□□□□ 0.16
CPSF4-208ENST00000452047 HACL1Q9UJ83 578 aa16.07■□□□□ 0.16
CPSF4-208ENST00000452047 EPHX2P34913 555 aa16.06■□□□□ 0.16
CPSF4-208ENST00000452047 EIF6P56537 245 aaKnown RBP16.06■□□□□ 0.16
CPSF4-208ENST00000452047 WDR63Q8IWG1 891 aa16.06■□□□□ 0.16
CPSF4-208ENST00000452047 NIM1KQ8IY84 436 aa16.06■□□□□ 0.16
CPSF4-208ENST00000452047 MPNDQ8N594 471 aa16.06■□□□□ 0.16
CPSF4-208ENST00000452047 SUPT20HQ8NEM7 779 aa16.06■□□□□ 0.16
CPSF4-208ENST00000452047 STK31Q9BXU1 1019 aa16.06■□□□□ 0.16
CPSF4-208ENST00000452047 MAP3K2Q9Y2U5 619 aa16.06■□□□□ 0.16
CPSF4-208ENST00000452047 MYH3P11055 1940 aa16.06■□□□□ 0.16
CPSF4-208ENST00000452047 PCCAP05165 728 aaPredicted RBP16.05■□□□□ 0.16
CPSF4-208ENST00000452047 SCNN1DP51172 638 aa16.05■□□□□ 0.16
CPSF4-208ENST00000452047 KIAA2012Q0VF49 1180 aa16.05■□□□□ 0.16
CPSF4-208ENST00000452047 KSR2Q6VAB6 950 aa16.05■□□□□ 0.16
CPSF4-208ENST00000452047 CWC25Q9NXE8 425 aaPredicted RBP16.05■□□□□ 0.16
CPSF4-208ENST00000452047 PI4KAP2A4QPH2 592 aa16.04■□□□□ 0.16
CPSF4-208ENST00000452047 IGKV5-2P06315 115 aa16.04■□□□□ 0.16
CPSF4-208ENST00000452047 G2E3Q7L622 706 aa16.04■□□□□ 0.16
CPSF4-208ENST00000452047 PI4KAP1Q8N8J0 262 aa16.04■□□□□ 0.16
CPSF4-208ENST00000452047 JMYQ8N9B5 988 aa16.04■□□□□ 0.16
CPSF4-208ENST00000452047 SALL2Q9Y467 1007 aaPredicted RBP16.04■□□□□ 0.16
CPSF4-208ENST00000452047 GJA3Q9Y6H8 435 aa16.04■□□□□ 0.16
CPSF4-208ENST00000452047 PASKQ96RG2 1323 aa16.03■□□□□ 0.16
CPSF4-208ENST00000452047 EAPPQ56P03 285 aaPredicted RBP16.03■□□□□ 0.16
CPSF4-208ENST00000452047 PNMA8AQ86V59 439 aaPredicted RBP16.03■□□□□ 0.16
CPSF4-208ENST00000452047 SPINK5Q9NQ38 1064 aaPredicted RBP16.03■□□□□ 0.16
CPSF4-208ENST00000452047 ZNRF3Q9ULT6 936 aa16.03■□□□□ 0.16
CPSF4-208ENST00000452047 CDHR2Q9BYE9 1310 aa16.02■□□□□ 0.16
CPSF4-208ENST00000452047 SLC4A2P04920 1241 aa16.02■□□□□ 0.16
CPSF4-208ENST00000452047 HSP90B1P14625 803 aaKnown RBP16.02■□□□□ 0.16
CPSF4-208ENST00000452047 CXCL9Q07325 125 aa16.02■□□□□ 0.16
CPSF4-208ENST00000452047 FAM9BQ8IZU0 186 aa16.02■□□□□ 0.16
CPSF4-208ENST00000452047 JARID2Q92833 1246 aaPredicted RBP16.02■□□□□ 0.16
CPSF4-208ENST00000452047 SEC31BQ9NQW1 1179 aa16.02■□□□□ 0.16
CPSF4-208ENST00000452047 PDE8AO60658 829 aa16.01■□□□□ 0.15
CPSF4-208ENST00000452047 VAMP4O75379 141 aa16.01■□□□□ 0.15
CPSF4-208ENST00000452047 ITGBL1O95965 494 aaPredicted RBP16.01■□□□□ 0.15
CPSF4-208ENST00000452047 RPS8P62241 208 aaKnown RBP16.01■□□□□ 0.15
CPSF4-208ENST00000452047 CREBZFQ9NS37 354 aa16.01■□□□□ 0.15
CPSF4-208ENST00000452047 YDJCA8MPS7 323 aa16■□□□□ 0.15
CPSF4-208ENST00000452047 NEURL1BA8MQ27 555 aa16■□□□□ 0.15
CPSF4-208ENST00000452047 LMOD1P29536 600 aaPredicted RBP16■□□□□ 0.15
CPSF4-208ENST00000452047 EPS15P42566 896 aa16■□□□□ 0.15
CPSF4-208ENST00000452047 GPSM2P81274 684 aa16■□□□□ 0.15
CPSF4-208ENST00000452047 EXOSC9Q06265 439 aaKnown RBP16■□□□□ 0.15
CPSF4-208ENST00000452047 FLIIQ13045 1269 aa16■□□□□ 0.15
CPSF4-208ENST00000452047 CWF19L2Q2TBE0 894 aaKnown RBP16■□□□□ 0.15
CPSF4-208ENST00000452047 CCDC152Q4G0S7 254 aa16■□□□□ 0.15
CPSF4-208ENST00000452047 NSFL1CQ9UNZ2 370 aaKnown RBP16■□□□□ 0.15
CPSF4-208ENST00000452047 SPEF2Q9C093 1822 aa16■□□□□ 0.15
CPSF4-208ENST00000452047 NEXNQ0ZGT2 675 aa15.99■□□□□ 0.15
CPSF4-208ENST00000452047 GPRC5DQ9NZD1 345 aa15.99■□□□□ 0.15
CPSF4-208ENST00000452047 POLLQ9UGP5 575 aa15.99■□□□□ 0.15
CPSF4-208ENST00000452047 CLEC11AQ9Y240 323 aa15.99■□□□□ 0.15
CPSF4-208ENST00000452047 ZNF521Q96K83 1311 aa15.98■□□□□ 0.15
CPSF4-208ENST00000452047 CTSWP56202 376 aa15.98■□□□□ 0.15
CPSF4-208ENST00000452047 WASHC4Q2M389 1173 aa15.98■□□□□ 0.15
CPSF4-208ENST00000452047 MAP1SQ66K74 1059 aaPredicted RBP15.98■□□□□ 0.15
CPSF4-208ENST00000452047 CIAPIN1Q6FI81 312 aa15.98■□□□□ 0.15
CPSF4-208ENST00000452047 PODXL2Q9NZ53 605 aa15.98■□□□□ 0.15
CPSF4-208ENST00000452047 SCN9AQ15858 1988 aa15.98■□□□□ 0.15
CPSF4-208ENST00000452047 RAD17O75943 681 aa15.97■□□□□ 0.15
CPSF4-208ENST00000452047 GMPSP49915 693 aaPredicted RBP15.97■□□□□ 0.15
CPSF4-208ENST00000452047 FKBP5Q13451 457 aaPredicted RBP15.97■□□□□ 0.15
CPSF4-208ENST00000452047 USP50Q70EL3 339 aaPredicted RBP15.97■□□□□ 0.15
CPSF4-208ENST00000452047 CNTROBQ8N137 903 aa15.97■□□□□ 0.15
CPSF4-208ENST00000452047 TBC1D16Q8TBP0 767 aa15.97■□□□□ 0.15
CPSF4-208ENST00000452047 CCDC85AQ96PX6 553 aaPredicted RBP15.97■□□□□ 0.15
CPSF4-208ENST00000452047 RTL9Q8NET4 1388 aa15.97■□□□□ 0.15
CPSF4-208ENST00000452047 C6orf229H3BNL8 230 aa15.96■□□□□ 0.15
CPSF4-208ENST00000452047 H7C1W4 665 aa15.96■□□□□ 0.15
CPSF4-208ENST00000452047 TNIP1Q15025 636 aa15.96■□□□□ 0.15
CPSF4-208ENST00000452047 TTLL11Q8NHH1 800 aa15.96■□□□□ 0.15
CPSF4-208ENST00000452047 DNAAF4Q8WXU2 420 aa15.96■□□□□ 0.15
CPSF4-208ENST00000452047 MYH16Q9H6N6 1097 aa15.96■□□□□ 0.15
CPSF4-208ENST00000452047 ADARB2Q9NS39 739 aaKnown RBP15.96■□□□□ 0.15
CPSF4-208ENST00000452047 PSME4Q14997 1843 aa15.96■□□□□ 0.14
CPSF4-208ENST00000452047 CASP7P55210 303 aa15.95■□□□□ 0.14
CPSF4-208ENST00000452047 GCKRQ14397 625 aa15.95■□□□□ 0.14
CPSF4-208ENST00000452047 UBE3BQ7Z3V4 1068 aa15.95■□□□□ 0.14
CPSF4-208ENST00000452047 LINS1Q8NG48 757 aa15.95■□□□□ 0.14
CPSF4-208ENST00000452047 GPR101Q96P66 508 aaPredicted RBP15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms