RNA–Protein interactions for RNA: ENST00000428728.5

TRIM39-209, Transcript of tripartite motif containing 39, humanhuman

TSL 3

Gene TRIM39, Length 1,013 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-209ENST00000428728 SP8Q8IXZ3 490 aa22.12■■□□□ 1.13
TRIM39-209ENST00000428728 SUPT20HQ8NEM7 779 aa22.12■■□□□ 1.13
TRIM39-209ENST00000428728 PHAXQ9H814 394 aaKnown RBP22.12■■□□□ 1.13
TRIM39-209ENST00000428728 SPEF2Q9C093 1822 aa22.12■■□□□ 1.13
TRIM39-209ENST00000428728 MYH3P11055 1940 aa22.12■■□□□ 1.13
TRIM39-209ENST00000428728 SCNN1DP51172 638 aa22.11■■□□□ 1.13
TRIM39-209ENST00000428728 MAP1SQ66K74 1059 aaPredicted RBP22.11■■□□□ 1.13
TRIM39-209ENST00000428728 RIC3Q7Z5B4 369 aa22.11■■□□□ 1.13
TRIM39-209ENST00000428728 MPNDQ8N594 471 aa22.11■■□□□ 1.13
TRIM39-209ENST00000428728 ITGBL1O95965 494 aaPredicted RBP22.1■■□□□ 1.13
TRIM39-209ENST00000428728 HSPA1AP0DMV8 641 aaKnown RBP22.1■■□□□ 1.13
TRIM39-209ENST00000428728 HSPA1BP0DMV9 641 aaKnown RBP22.1■■□□□ 1.13
TRIM39-209ENST00000428728 C8orf58Q8NAV2 365 aa22.1■■□□□ 1.13
TRIM39-209ENST00000428728 RTFDC1Q9BY42 306 aaPredicted RBP22.1■■□□□ 1.13
TRIM39-209ENST00000428728 EPS15P42566 896 aa22.09■■□□□ 1.13
TRIM39-209ENST00000428728 CNTNAP1P78357 1384 aa22.09■■□□□ 1.13
TRIM39-209ENST00000428728 CNTROBQ8N137 903 aa22.08■■□□□ 1.13
TRIM39-209ENST00000428728 VPS33BQ9H267 617 aa22.08■■□□□ 1.13
TRIM39-209ENST00000428728 PCNTO95613 3336 aa22.07■■□□□ 1.12
TRIM39-209ENST00000428728 TMEM88BA6NKF7 163 aa22.07■■□□□ 1.12
TRIM39-209ENST00000428728 IRS4O14654 1257 aaPredicted RBP22.07■■□□□ 1.12
TRIM39-209ENST00000428728 KIAA2012Q0VF49 1180 aa22.07■■□□□ 1.12
TRIM39-209ENST00000428728 TMC4Q7Z404 712 aa22.07■■□□□ 1.12
TRIM39-209ENST00000428728 CELF1Q92879 486 aaKnown RBP22.07■■□□□ 1.12
TRIM39-209ENST00000428728 MYD88Q99836 296 aa22.07■■□□□ 1.12
TRIM39-209ENST00000428728 ZNRF3Q9ULT6 936 aa22.07■■□□□ 1.12
TRIM39-209ENST00000428728 CXCL9Q07325 125 aa22.06■■□□□ 1.12
TRIM39-209ENST00000428728 SF3B3Q15393 1217 aaKnown RBP22.06■■□□□ 1.12
TRIM39-209ENST00000428728 COL13A1Q5TAT6 717 aaPredicted RBP22.06■■□□□ 1.12
TRIM39-209ENST00000428728 TSR2Q969E8 191 aaKnown RBP22.06■■□□□ 1.12
TRIM39-209ENST00000428728 TRIM28Q13263 835 aaKnown RBP22.05■■□□□ 1.12
TRIM39-209ENST00000428728 CCDC30Q5VVM6 783 aa22.05■■□□□ 1.12
TRIM39-209ENST00000428728 TSPYL6Q8N831 410 aa22.05■■□□□ 1.12
TRIM39-209ENST00000428728 CACNA1FO60840 1977 aa22.05■■□□□ 1.12
TRIM39-209ENST00000428728 ZBTB38Q8NAP3 1195 aaPredicted RBP22.04■■□□□ 1.12
TRIM39-209ENST00000428728 GPRC5DQ9NZD1 345 aa22.04■■□□□ 1.12
TRIM39-209ENST00000428728 RAD17O75943 681 aa22.03■■□□□ 1.12
TRIM39-209ENST00000428728 GMPSP49915 693 aaPredicted RBP22.03■■□□□ 1.12
TRIM39-209ENST00000428728 CIAPIN1Q6FI81 312 aa22.03■■□□□ 1.12
TRIM39-209ENST00000428728 USP50Q70EL3 339 aaPredicted RBP22.03■■□□□ 1.12
TRIM39-209ENST00000428728 SCN9AQ15858 1988 aa22.03■■□□□ 1.12
TRIM39-209ENST00000428728 DDX58O95786 925 aaKnown RBP22.02■■□□□ 1.12
TRIM39-209ENST00000428728 JARID2Q92833 1246 aaPredicted RBP22.02■■□□□ 1.12
TRIM39-209ENST00000428728 BCL2L13Q9BXK5 485 aa22.02■■□□□ 1.12
TRIM39-209ENST00000428728 MRS2Q9HD23 443 aa22.02■■□□□ 1.12
TRIM39-209ENST00000428728 NSFL1CQ9UNZ2 370 aaKnown RBP22.02■■□□□ 1.12
TRIM39-209ENST00000428728 YDJCA8MPS7 323 aa22.01■■□□□ 1.11
TRIM39-209ENST00000428728 ZEB1P37275 1124 aaPredicted RBP22.01■■□□□ 1.11
TRIM39-209ENST00000428728 FMR1Q06787 632 aaKnown RBP eCLIP22.01■■□□□ 1.11
TRIM39-209ENST00000428728 WWC1Q8IX03 1113 aa22.01■■□□□ 1.11
TRIM39-209ENST00000428728 CCDC191Q8NCU4 936 aa22.01■■□□□ 1.11
TRIM39-209ENST00000428728 ADARB2Q9NS39 739 aaKnown RBP22.01■■□□□ 1.11
TRIM39-209ENST00000428728 CWC25Q9NXE8 425 aaPredicted RBP22.01■■□□□ 1.11
TRIM39-209ENST00000428728 PSME4Q14997 1843 aa22.01■■□□□ 1.11
TRIM39-209ENST00000428728 C6orf229H3BNL8 230 aa22■■□□□ 1.11
TRIM39-209ENST00000428728 VEGFBP49765 207 aa22■■□□□ 1.11
TRIM39-209ENST00000428728 GPSM2P81274 684 aa22■■□□□ 1.11
TRIM39-209ENST00000428728 METTL22Q9BUU2 404 aaPredicted RBP22■■□□□ 1.11
TRIM39-209ENST00000428728 ABT1Q9ULW3 272 aaKnown RBP22■■□□□ 1.11
TRIM39-209ENST00000428728 MAP3K2Q9Y2U5 619 aa22■■□□□ 1.11
TRIM39-209ENST00000428728 RIMBP2O15034 1052 aa21.99■■□□□ 1.11
TRIM39-209ENST00000428728 PCCAP05165 728 aaPredicted RBP21.99■■□□□ 1.11
TRIM39-209ENST00000428728 TNIP1Q15025 636 aa21.99■■□□□ 1.11
TRIM39-209ENST00000428728 CCDC27Q2M243 656 aa21.99■■□□□ 1.11
TRIM39-209ENST00000428728 WASHC4Q2M389 1173 aa21.99■■□□□ 1.11
TRIM39-209ENST00000428728 GPR101Q96P66 508 aaPredicted RBP21.99■■□□□ 1.11
TRIM39-209ENST00000428728 CCDC85AQ96PX6 553 aaPredicted RBP21.99■■□□□ 1.11
TRIM39-209ENST00000428728 STK31Q9BXU1 1019 aa21.99■■□□□ 1.11
TRIM39-209ENST00000428728 CHMP4AQ9BY43 222 aa21.99■■□□□ 1.11
TRIM39-209ENST00000428728 DBNDD1Q9H9R9 158 aa21.99■■□□□ 1.11
TRIM39-209ENST00000428728 SEC31BQ9NQW1 1179 aa21.99■■□□□ 1.11
TRIM39-209ENST00000428728 POLR2AP24928 1970 aaKnown RBP21.98■■□□□ 1.11
TRIM39-209ENST00000428728 TRAF5O00463 557 aa21.98■■□□□ 1.11
TRIM39-209ENST00000428728 HSP90B1P14625 803 aaKnown RBP21.98■■□□□ 1.11
TRIM39-209ENST00000428728 RPS8P62241 208 aaKnown RBP21.98■■□□□ 1.11
TRIM39-209ENST00000428728 POLLQ9UGP5 575 aa21.98■■□□□ 1.11
TRIM39-209ENST00000428728 CDHR2Q9BYE9 1310 aa21.98■■□□□ 1.11
TRIM39-209ENST00000428728 THSD7BQ9C0I4 1608 aa21.98■■□□□ 1.11
TRIM39-209ENST00000428728 ANP32CO43423 234 aa21.97■■□□□ 1.11
TRIM39-209ENST00000428728 TWISTNBQ3B726 338 aaPredicted RBP21.97■■□□□ 1.11
TRIM39-209ENST00000428728 CCDC152Q4G0S7 254 aa21.97■■□□□ 1.11
TRIM39-209ENST00000428728 TNS4Q8IZW8 715 aa21.97■■□□□ 1.11
TRIM39-209ENST00000428728 SHTN1A0MZ66 631 aa21.96■■□□□ 1.11
TRIM39-209ENST00000428728 RASSF10A6NK89 507 aa21.96■■□□□ 1.11
TRIM39-209ENST00000428728 PDE8AO60658 829 aa21.96■■□□□ 1.11
TRIM39-209ENST00000428728 PI4KAP2A4QPH2 592 aa21.95■■□□□ 1.1
TRIM39-209ENST00000428728 ZNF316A6NFI3 1004 aaPredicted RBP21.95■■□□□ 1.1
TRIM39-209ENST00000428728 ECE2O60344 883 aa21.95■■□□□ 1.1
TRIM39-209ENST00000428728 DOK7Q18PE1 504 aa21.95■■□□□ 1.1
TRIM39-209ENST00000428728 DEFB115Q30KQ5 88 aa21.95■■□□□ 1.1
TRIM39-209ENST00000428728 KSR2Q6VAB6 950 aa21.95■■□□□ 1.1
TRIM39-209ENST00000428728 PI4KAP1Q8N8J0 262 aa21.95■■□□□ 1.1
TRIM39-209ENST00000428728 TRPM4Q8TD43 1214 aa21.95■■□□□ 1.1
TRIM39-209ENST00000428728 EYA3Q99504 573 aa21.95■■□□□ 1.1
TRIM39-209ENST00000428728 ZBTB12Q9Y330 459 aaPredicted RBP21.95■■□□□ 1.1
TRIM39-209ENST00000428728 SALL2Q9Y467 1007 aaPredicted RBP21.95■■□□□ 1.1
TRIM39-209ENST00000428728 PSMD14O00487 310 aa21.94■■□□□ 1.1
TRIM39-209ENST00000428728 PAXIP1Q6ZW49 1069 aaPredicted RBP21.94■■□□□ 1.1
TRIM39-209ENST00000428728 MICALL2Q8IY33 904 aa21.94■■□□□ 1.1
TRIM39-209ENST00000428728 TBC1D16Q8TBP0 767 aa21.94■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms