RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 TTC39BQ5VTQ0 682 aaPredicted RBP7.79□□□□□ -1.16
VPS54-204ENST00000416400 ZNF438Q7Z4V0 828 aa7.79□□□□□ -1.16
VPS54-204ENST00000416400 RAB44Q7Z6P3 723 aaPredicted RBP7.79□□□□□ -1.16
VPS54-204ENST00000416400 NLRP13Q86W25 1043 aa7.79□□□□□ -1.16
VPS54-204ENST00000416400 CITED4Q96RK1 184 aa7.79□□□□□ -1.16
VPS54-204ENST00000416400 IGFLR1Q9H665 355 aa7.79□□□□□ -1.16
VPS54-204ENST00000416400 CCDC87Q9NVE4 849 aa7.79□□□□□ -1.16
VPS54-204ENST00000416400 EGFRP00533 1210 aa7.78□□□□□ -1.16
VPS54-204ENST00000416400 PCBP4P57723 403 aaKnown RBP7.78□□□□□ -1.16
VPS54-204ENST00000416400 ARHGAP4P98171 946 aa7.78□□□□□ -1.16
VPS54-204ENST00000416400 KRT76Q01546 638 aa7.78□□□□□ -1.16
VPS54-204ENST00000416400 GRIN2CQ14957 1233 aa7.78□□□□□ -1.16
VPS54-204ENST00000416400 PDE12Q6L8Q7 609 aaKnown RBP7.78□□□□□ -1.16
VPS54-204ENST00000416400 DCTN4Q9UJW0 460 aa7.78□□□□□ -1.16
VPS54-204ENST00000416400 KCNMB2Q9Y691 235 aa7.78□□□□□ -1.16
VPS54-204ENST00000416400 NEURL1BA8MQ27 555 aa7.77□□□□□ -1.17
VPS54-204ENST00000416400 SIN3BO75182 1162 aa7.77□□□□□ -1.17
VPS54-204ENST00000416400 NEFLP07196 543 aa7.77□□□□□ -1.17
VPS54-204ENST00000416400 PSAPP07602 524 aa7.77□□□□□ -1.17
VPS54-204ENST00000416400 ALAS2P22557 587 aa7.77□□□□□ -1.17
VPS54-204ENST00000416400 PCSK7Q16549 785 aa7.77□□□□□ -1.17
VPS54-204ENST00000416400 ZSCAN29Q8IWY8 852 aaPredicted RBP7.77□□□□□ -1.17
VPS54-204ENST00000416400 UBE2OQ9C0C9 1292 aaKnown RBP7.77□□□□□ -1.17
VPS54-204ENST00000416400 GGA1Q9UJY5 639 aa7.77□□□□□ -1.17
VPS54-204ENST00000416400 E9PSI1 815 aa7.76□□□□□ -1.17
VPS54-204ENST00000416400 TARSP26639 723 aaKnown RBP7.76□□□□□ -1.17
VPS54-204ENST00000416400 INSM1Q01101 510 aaPredicted RBP7.76□□□□□ -1.17
VPS54-204ENST00000416400 TRIP4Q15650 581 aaPredicted RBP7.76□□□□□ -1.17
VPS54-204ENST00000416400 ELP3Q9H9T3 547 aa7.76□□□□□ -1.17
VPS54-204ENST00000416400 ENAMQ9NRM1 1142 aa7.76□□□□□ -1.17
VPS54-204ENST00000416400 HCN2Q9UL51 889 aa7.76□□□□□ -1.17
VPS54-204ENST00000416400 ANKRD33BA6NCL7 494 aa7.75□□□□□ -1.17
VPS54-204ENST00000416400 WIPF1O43516 503 aa7.75□□□□□ -1.17
VPS54-204ENST00000416400 MAP3K6O95382 1288 aa7.75□□□□□ -1.17
VPS54-204ENST00000416400 SLURP2P0DP57 97 aa7.75□□□□□ -1.17
VPS54-204ENST00000416400 GRNP28799 593 aaKnown RBP7.75□□□□□ -1.17
VPS54-204ENST00000416400 ECM1Q16610 540 aa7.75□□□□□ -1.17
VPS54-204ENST00000416400 LCE2CQ5TA81 110 aa7.75□□□□□ -1.17
VPS54-204ENST00000416400 SVOPQ8N4V2 548 aa7.75□□□□□ -1.17
VPS54-204ENST00000416400 GGNBP2Q9H3C7 697 aa7.75□□□□□ -1.17
VPS54-204ENST00000416400 ABI2Q9NYB9 513 aaPredicted RBP7.75□□□□□ -1.17
VPS54-204ENST00000416400 RBM47A0AV96 593 aaKnown RBP7.74□□□□□ -1.17
VPS54-204ENST00000416400 PHF20L1A8MW92 1017 aa7.74□□□□□ -1.17
VPS54-204ENST00000416400 BCRP11274 1271 aa7.74□□□□□ -1.17
VPS54-204ENST00000416400 AMPD1P23109 780 aa7.74□□□□□ -1.17
VPS54-204ENST00000416400 PLAURQ03405 335 aa7.74□□□□□ -1.17
VPS54-204ENST00000416400 LCE2AQ5TA79 106 aaPredicted RBP7.74□□□□□ -1.17
VPS54-204ENST00000416400 SLCO4C1Q6ZQN7 724 aa7.74□□□□□ -1.17
VPS54-204ENST00000416400 DHX32Q7L7V1 743 aaKnown RBP7.74□□□□□ -1.17
VPS54-204ENST00000416400 GJD3Q8N144 294 aa7.74□□□□□ -1.17
VPS54-204ENST00000416400 GALNT6Q8NCL4 622 aa7.74□□□□□ -1.17
VPS54-204ENST00000416400 ACDQ96AP0 544 aa7.74□□□□□ -1.17
VPS54-204ENST00000416400 DMRTB1Q96MA1 342 aa7.74□□□□□ -1.17
VPS54-204ENST00000416400 BCL2L13Q9BXK5 485 aa7.74□□□□□ -1.17
VPS54-204ENST00000416400 XKR5Q6UX68 686 aa7.73□□□□□ -1.17
VPS54-204ENST00000416400 NPAS4Q8IUM7 802 aa7.73□□□□□ -1.17
VPS54-204ENST00000416400 NEDD1Q8NHV4 660 aa7.73□□□□□ -1.17
VPS54-204ENST00000416400 PMEPA1Q969W9 287 aa7.73□□□□□ -1.17
VPS54-204ENST00000416400 ASB16Q96NS5 453 aa7.73□□□□□ -1.17
VPS54-204ENST00000416400 RBCK1Q9BYM8 510 aa7.73□□□□□ -1.17
VPS54-204ENST00000416400 TLR7Q9NYK1 1049 aaKnown RBP7.73□□□□□ -1.17
VPS54-204ENST00000416400 ELOA3CA0A087WX78 387 aaPredicted RBP7.72□□□□□ -1.17
VPS54-204ENST00000416400 A6NHS1 94 aa7.72□□□□□ -1.17
VPS54-204ENST00000416400 ELOA3DA6NLF2 546 aaPredicted RBP7.72□□□□□ -1.17
VPS54-204ENST00000416400 MMP20O60882 483 aa7.72□□□□□ -1.17
VPS54-204ENST00000416400 PHACTR2O75167 634 aa7.72□□□□□ -1.17
VPS54-204ENST00000416400 CELA2BP08218 269 aaPredicted RBP7.72□□□□□ -1.17
VPS54-204ENST00000416400 ELOA3BQ3SY89 546 aa7.72□□□□□ -1.17
VPS54-204ENST00000416400 ZSCAN1Q8NBB4 408 aa7.72□□□□□ -1.17
VPS54-204ENST00000416400 ELOA3Q8NG57 546 aa7.72□□□□□ -1.17
VPS54-204ENST00000416400 SNX29Q8TEQ0 813 aa7.72□□□□□ -1.17
VPS54-204ENST00000416400 EDARADDQ8WWZ3 215 aa7.72□□□□□ -1.17
VPS54-204ENST00000416400 TNFRSF25Q93038 417 aa7.72□□□□□ -1.17
VPS54-204ENST00000416400 SPACA7Q96KW9 195 aa7.72□□□□□ -1.17
VPS54-204ENST00000416400 RBSNQ9H1K0 784 aa7.72□□□□□ -1.17
VPS54-204ENST00000416400 LRRC4BQ9NT99 713 aa7.72□□□□□ -1.17
VPS54-204ENST00000416400 ZFATQ9P243 1243 aa7.72□□□□□ -1.17
VPS54-204ENST00000416400 OIP5O43482 229 aa7.71□□□□□ -1.18
VPS54-204ENST00000416400 CES1P23141 567 aa7.71□□□□□ -1.18
VPS54-204ENST00000416400 ADH7P40394 386 aa7.71□□□□□ -1.18
VPS54-204ENST00000416400 LYPD4Q6UWN0 246 aa7.71□□□□□ -1.18
VPS54-204ENST00000416400 DNAJB12Q9NXW2 375 aaKnown RBP7.71□□□□□ -1.18
VPS54-204ENST00000416400 TMEM63CQ9P1W3 806 aa7.71□□□□□ -1.18
VPS54-204ENST00000416400 ADARB2-AS1A8MUL3 147 aa7.7□□□□□ -1.18
VPS54-204ENST00000416400 GHRHP01286 108 aa7.7□□□□□ -1.18
VPS54-204ENST00000416400 EPXP11678 715 aa7.7□□□□□ -1.18
VPS54-204ENST00000416400 SOX18P35713 384 aa7.7□□□□□ -1.18
VPS54-204ENST00000416400 NRLP54845 237 aa7.7□□□□□ -1.18
VPS54-204ENST00000416400 PLCB3Q01970 1234 aa7.7□□□□□ -1.18
VPS54-204ENST00000416400 HYAL2Q12891 473 aa7.7□□□□□ -1.18
VPS54-204ENST00000416400 FCHSD1Q86WN1 690 aa7.7□□□□□ -1.18
VPS54-204ENST00000416400 GIPC2Q8TF65 315 aa7.7□□□□□ -1.18
VPS54-204ENST00000416400 FAM129BQ96TA1 746 aa7.7□□□□□ -1.18
VPS54-204ENST00000416400 KLF15Q9UIH9 416 aa7.7□□□□□ -1.18
VPS54-204ENST00000416400 FAM181BA6NEQ2 426 aa7.69□□□□□ -1.18
VPS54-204ENST00000416400 TNFRSF21O75509 655 aa7.69□□□□□ -1.18
VPS54-204ENST00000416400 GPLD1P80108 840 aa7.69□□□□□ -1.18
VPS54-204ENST00000416400 TMC7Q7Z402 723 aa7.69□□□□□ -1.18
VPS54-204ENST00000416400 FAM35AQ86V20 835 aa7.69□□□□□ -1.18
VPS54-204ENST00000416400 NCAPG2Q86XI2 1143 aa7.69□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms