RNA–Protein interactions for RNA: ENST00000404484.8

TPM1-208, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 1,568 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-208ENST00000404484 ZBTB38Q8NAP3 1195 aaPredicted RBP25.91■■□□□ 1.74
TPM1-208ENST00000404484 SCN7AQ01118 1682 aa25.91■■□□□ 1.74
TPM1-208ENST00000404484 WWC3Q9ULE0 1092 aa25.9■■□□□ 1.74
TPM1-208ENST00000404484 YBX3P16989 372 aaKnown RBP eCLIP25.9■■□□□ 1.74
TPM1-208ENST00000404484 OS9Q13438 667 aaPredicted RBP25.9■■□□□ 1.74
TPM1-208ENST00000404484 EPHA10Q5JZY3 1008 aa25.9■■□□□ 1.74
TPM1-208ENST00000404484 RBM19Q9Y4C8 960 aaKnown RBP25.9■■□□□ 1.74
TPM1-208ENST00000404484 SMARCA5O60264 1052 aaPredicted RBP25.89■■□□□ 1.73
TPM1-208ENST00000404484 DPEP1P16444 411 aa25.89■■□□□ 1.73
TPM1-208ENST00000404484 C8orf34Q49A92 452 aa25.89■■□□□ 1.73
TPM1-208ENST00000404484 BMP2KLQ5H9B9 411 aa25.89■■□□□ 1.73
TPM1-208ENST00000404484 ZNF34Q8IZ26 560 aa25.89■■□□□ 1.73
TPM1-208ENST00000404484 KIF13BQ9NQT8 1826 aa25.89■■□□□ 1.73
TPM1-208ENST00000404484 CDHR2Q9BYE9 1310 aa25.89■■□□□ 1.73
TPM1-208ENST00000404484 BCORQ6W2J9 1755 aa25.88■■□□□ 1.73
TPM1-208ENST00000404484 GPTP24298 496 aa25.88■■□□□ 1.73
TPM1-208ENST00000404484 PLEKHM2Q8IWE5 1019 aa25.88■■□□□ 1.73
TPM1-208ENST00000404484 JARID2Q92833 1246 aaPredicted RBP25.88■■□□□ 1.73
TPM1-208ENST00000404484 PARP10Q53GL7 1025 aa25.87■■□□□ 1.73
TPM1-208ENST00000404484 RHPN1Q8TCX5 695 aa25.87■■□□□ 1.73
TPM1-208ENST00000404484 PLA2G12BQ9BX93 195 aa25.87■■□□□ 1.73
TPM1-208ENST00000404484 CARMIL3Q8ND23 1372 aa25.87■■□□□ 1.73
TPM1-208ENST00000404484 KCNA3P22001 575 aa25.86■■□□□ 1.73
TPM1-208ENST00000404484 FOXO4P98177 505 aa25.86■■□□□ 1.73
TPM1-208ENST00000404484 G3BP1Q13283 466 aaKnown RBP eCLIP25.86■■□□□ 1.73
TPM1-208ENST00000404484 NIP7Q9Y221 180 aaKnown RBP eCLIP25.86■■□□□ 1.73
TPM1-208ENST00000404484 LMBR1LQ6UX01 489 aa25.86■■□□□ 1.73
TPM1-208ENST00000404484 CCDC24Q8N4L8 307 aa25.86■■□□□ 1.73
TPM1-208ENST00000404484 COPRSQ9NQ92 184 aa25.86■■□□□ 1.73
TPM1-208ENST00000404484 PRR5LQ6MZQ0 368 aa25.85■■□□□ 1.73
TPM1-208ENST00000404484 NRXN2Q9P2S2 1712 aa25.84■■□□□ 1.73
TPM1-208ENST00000404484 CHRNA5P30532 468 aa25.84■■□□□ 1.73
TPM1-208ENST00000404484 RTL5Q5HYW3 569 aaPredicted RBP25.84■■□□□ 1.73
TPM1-208ENST00000404484 OSBPL3Q9H4L5 887 aa25.84■■□□□ 1.73
TPM1-208ENST00000404484 TRMT112Q9UI30 125 aaKnown RBP25.84■■□□□ 1.73
TPM1-208ENST00000404484 HSP90B1P14625 803 aaKnown RBP25.83■■□□□ 1.73
TPM1-208ENST00000404484 C16orf71Q8IYS4 520 aaPredicted RBP25.83■■□□□ 1.73
TPM1-208ENST00000404484 PA2G4Q9UQ80 394 aaKnown RBP25.83■■□□□ 1.73
TPM1-208ENST00000404484 NBPF5PQ86XG9 351 aaPredicted RBP25.82■■□□□ 1.72
TPM1-208ENST00000404484 FAM89AQ96GI7 184 aa25.82■■□□□ 1.72
TPM1-208ENST00000404484 KIAA1551Q9HCM1 1747 aa25.82■■□□□ 1.72
TPM1-208ENST00000404484 RFX5P48382 616 aaPredicted RBP25.82■■□□□ 1.72
TPM1-208ENST00000404484 CLASRPQ8N2M8 674 aaKnown RBP25.82■■□□□ 1.72
TPM1-208ENST00000404484 CNBD1Q8NA66 436 aa25.82■■□□□ 1.72
TPM1-208ENST00000404484 BCL11AQ9H165 835 aa25.82■■□□□ 1.72
TPM1-208ENST00000404484 CHMP3Q9Y3E7 222 aa25.82■■□□□ 1.72
TPM1-208ENST00000404484 AOX1Q06278 1338 aa25.82■■□□□ 1.72
TPM1-208ENST00000404484 UBN2Q6ZU65 1347 aa25.82■■□□□ 1.72
TPM1-208ENST00000404484 GRIN3BO60391 1043 aa25.81■■□□□ 1.72
TPM1-208ENST00000404484 TTC22Q5TAA0 569 aa25.81■■□□□ 1.72
TPM1-208ENST00000404484 UTP14AQ9BVJ6 771 aaKnown RBP25.81■■□□□ 1.72
TPM1-208ENST00000404484 SALL3Q9BXA9 1300 aa25.8■■□□□ 1.72
TPM1-208ENST00000404484 FAM177BA6PVY3 158 aa25.8■■□□□ 1.72
TPM1-208ENST00000404484 MX1P20591 662 aa25.8■■□□□ 1.72
TPM1-208ENST00000404484 PDE1AP54750 535 aa25.8■■□□□ 1.72
TPM1-208ENST00000404484 OTUD7AQ8TE49 926 aaPredicted RBP25.8■■□□□ 1.72
TPM1-208ENST00000404484 BRIP1Q9BX63 1249 aa25.8■■□□□ 1.72
TPM1-208ENST00000404484 IL1RAPL2Q9NP60 686 aa25.8■■□□□ 1.72
TPM1-208ENST00000404484 SH3TC1Q8TE82 1336 aa25.79■■□□□ 1.72
TPM1-208ENST00000404484 NPHP1O15259 732 aa25.79■■□□□ 1.72
TPM1-208ENST00000404484 PTPN12Q05209 780 aaKnown RBP25.79■■□□□ 1.72
TPM1-208ENST00000404484 TPTE2Q6XPS3 522 aa25.79■■□□□ 1.72
TPM1-208ENST00000404484 PIM2Q9P1W9 311 aa25.79■■□□□ 1.72
TPM1-208ENST00000404484 STAP2Q9UGK3 403 aa25.79■■□□□ 1.72
TPM1-208ENST00000404484 IRS4O14654 1257 aaPredicted RBP25.78■■□□□ 1.72
TPM1-208ENST00000404484 BCS1LQ9Y276 419 aa25.78■■□□□ 1.72
TPM1-208ENST00000404484 CSF1RP07333 972 aa25.78■■□□□ 1.72
TPM1-208ENST00000404484 PDE8AO60658 829 aa25.77■■□□□ 1.72
TPM1-208ENST00000404484 ST5P78524 1137 aa25.77■■□□□ 1.72
TPM1-208ENST00000404484 CCDC57Q2TAC2 916 aa25.77■■□□□ 1.72
TPM1-208ENST00000404484 C2CD5Q86YS7 1000 aa25.77■■□□□ 1.72
TPM1-208ENST00000404484 SIL1Q9H173 461 aa25.77■■□□□ 1.72
TPM1-208ENST00000404484 FBXO3Q9UK99 471 aa25.77■■□□□ 1.72
TPM1-208ENST00000404484 EIF5BO60841 1220 aaKnown RBP25.76■■□□□ 1.71
TPM1-208ENST00000404484 PDE6BP35913 854 aa25.76■■□□□ 1.71
TPM1-208ENST00000404484 CTSWP56202 376 aa25.76■■□□□ 1.71
TPM1-208ENST00000404484 SUSD4Q5VX71 490 aa25.76■■□□□ 1.71
TPM1-208ENST00000404484 GPATCH3Q96I76 525 aa25.76■■□□□ 1.71
TPM1-208ENST00000404484 MYH3P11055 1940 aa25.76■■□□□ 1.71
TPM1-208ENST00000404484 H0YIN7 160 aa25.75■■□□□ 1.71
TPM1-208ENST00000404484 SASH1O94885 1247 aa25.74■■□□□ 1.71
TPM1-208ENST00000404484 GSPT1P15170 499 aaKnown RBP25.74■■□□□ 1.71
TPM1-208ENST00000404484 DALRD3Q5D0E6 543 aaKnown RBP25.74■■□□□ 1.71
TPM1-208ENST00000404484 KLHDC4Q8TBB5 520 aa25.74■■□□□ 1.71
TPM1-208ENST00000404484 CIAO1O76071 339 aa25.73■■□□□ 1.71
TPM1-208ENST00000404484 IFIT2P09913 472 aaKnown RBP25.73■■□□□ 1.71
TPM1-208ENST00000404484 TTC41PQ6P2S7 1318 aa25.73■■□□□ 1.71
TPM1-208ENST00000404484 NTSR2O95665 410 aa25.73■■□□□ 1.71
TPM1-208ENST00000404484 YY1P25490 414 aa25.73■■□□□ 1.71
TPM1-208ENST00000404484 GTF2E1P29083 439 aaPredicted RBP25.73■■□□□ 1.71
TPM1-208ENST00000404484 IFIT5Q13325 482 aaKnown RBP25.73■■□□□ 1.71
TPM1-208ENST00000404484 NUTM1Q86Y26 1132 aa25.73■■□□□ 1.71
TPM1-208ENST00000404484 NYXQ9GZU5 481 aa25.73■■□□□ 1.71
TPM1-208ENST00000404484 UPF2Q9HAU5 1272 aaKnown RBP25.73■■□□□ 1.71
TPM1-208ENST00000404484 LAMB2P55268 1798 aa25.72■■□□□ 1.71
TPM1-208ENST00000404484 IL15P40933 162 aaPredicted RBP25.72■■□□□ 1.71
TPM1-208ENST00000404484 TAF7LQ5H9L4 462 aa25.72■■□□□ 1.71
TPM1-208ENST00000404484 TTLL11Q8NHH1 800 aa25.72■■□□□ 1.71
TPM1-208ENST00000404484 ANKRD31Q8N7Z5 1873 aa25.71■■□□□ 1.71
TPM1-208ENST00000404484 CDC45O75419 566 aa25.71■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms