RNA–Protein interactions for RNA: ENST00000376707.4

VSX1-201, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene VSX1, Length 943 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-201ENST00000376707 TRIM28Q13263 835 aaKnown RBP27.2■■□□□ 1.94
VSX1-201ENST00000376707 CCDC184Q52MB2 194 aa27.2■■□□□ 1.94
VSX1-201ENST00000376707 RTL5Q5HYW3 569 aaPredicted RBP27.2■■□□□ 1.94
VSX1-201ENST00000376707 MAP1SQ66K74 1059 aaPredicted RBP27.2■■□□□ 1.94
VSX1-201ENST00000376707 PHAXQ9H814 394 aaKnown RBP27.2■■□□□ 1.94
VSX1-201ENST00000376707 ZNRF3Q9ULT6 936 aa27.2■■□□□ 1.94
VSX1-201ENST00000376707 SCNN1DP51172 638 aa27.19■■□□□ 1.94
VSX1-201ENST00000376707 CNTROBQ8N137 903 aa27.19■■□□□ 1.94
VSX1-201ENST00000376707 C8orf58Q8NAV2 365 aa27.19■■□□□ 1.94
VSX1-201ENST00000376707 CHMP4AQ9BY43 222 aa27.19■■□□□ 1.94
VSX1-201ENST00000376707 ADAMTSL1Q8N6G6 1762 aa27.19■■□□□ 1.94
VSX1-201ENST00000376707 TMEM88BA6NKF7 163 aa27.18■■□□□ 1.94
VSX1-201ENST00000376707 EPS15P42566 896 aa27.18■■□□□ 1.94
VSX1-201ENST00000376707 SF3B3Q15393 1217 aaKnown RBP27.18■■□□□ 1.94
VSX1-201ENST00000376707 IRS4O14654 1257 aaPredicted RBP27.17■■□□□ 1.94
VSX1-201ENST00000376707 HSPA1AP0DMV8 641 aaKnown RBP27.17■■□□□ 1.94
VSX1-201ENST00000376707 HSPA1BP0DMV9 641 aaKnown RBP27.17■■□□□ 1.94
VSX1-201ENST00000376707 KIAA2012Q0VF49 1180 aa27.17■■□□□ 1.94
VSX1-201ENST00000376707 CCDC30Q5VVM6 783 aa27.17■■□□□ 1.94
VSX1-201ENST00000376707 DDX60Q8IY21 1712 aaKnown RBP27.16■■□□□ 1.94
VSX1-201ENST00000376707 CXCL9Q07325 125 aa27.15■■□□□ 1.94
VSX1-201ENST00000376707 CELF1Q92879 486 aaKnown RBP27.15■■□□□ 1.94
VSX1-201ENST00000376707 MYD88Q99836 296 aa27.15■■□□□ 1.94
VSX1-201ENST00000376707 LTBP1Q14766 1721 aa27.15■■□□□ 1.94
VSX1-201ENST00000376707 CNTNAP1P78357 1384 aa27.14■■□□□ 1.94
VSX1-201ENST00000376707 DDX58O95786 925 aaKnown RBP27.14■■□□□ 1.94
VSX1-201ENST00000376707 USP50Q70EL3 339 aaPredicted RBP27.14■■□□□ 1.94
VSX1-201ENST00000376707 ZBTB38Q8NAP3 1195 aaPredicted RBP27.14■■□□□ 1.94
VSX1-201ENST00000376707 HSP90B1P14625 803 aaKnown RBP27.13■■□□□ 1.93
VSX1-201ENST00000376707 COL13A1Q5TAT6 717 aaPredicted RBP27.13■■□□□ 1.93
VSX1-201ENST00000376707 CIAPIN1Q6FI81 312 aa27.13■■□□□ 1.93
VSX1-201ENST00000376707 GPRC5DQ9NZD1 345 aa27.13■■□□□ 1.93
VSX1-201ENST00000376707 CCDC27Q2M243 656 aa27.12■■□□□ 1.93
VSX1-201ENST00000376707 TSR2Q969E8 191 aaKnown RBP27.12■■□□□ 1.93
VSX1-201ENST00000376707 NSFL1CQ9UNZ2 370 aaKnown RBP27.12■■□□□ 1.93
VSX1-201ENST00000376707 TNIP1Q15025 636 aa27.11■■□□□ 1.93
VSX1-201ENST00000376707 TSPYL6Q8N831 410 aa27.11■■□□□ 1.93
VSX1-201ENST00000376707 CCDC191Q8NCU4 936 aa27.11■■□□□ 1.93
VSX1-201ENST00000376707 ADARB2Q9NS39 739 aaKnown RBP27.11■■□□□ 1.93
VSX1-201ENST00000376707 ANP32CO43423 234 aa27.1■■□□□ 1.93
VSX1-201ENST00000376707 RAD17O75943 681 aa27.1■■□□□ 1.93
VSX1-201ENST00000376707 GMPSP49915 693 aaPredicted RBP27.1■■□□□ 1.93
VSX1-201ENST00000376707 TAF1P21675 1872 aa27.1■■□□□ 1.93
VSX1-201ENST00000376707 LRRC37AA6NMS7 1700 aa27.1■■□□□ 1.93
VSX1-201ENST00000376707 PCNTO95613 3336 aa27.09■■□□□ 1.93
VSX1-201ENST00000376707 WASHC4Q2M389 1173 aa27.09■■□□□ 1.93
VSX1-201ENST00000376707 WWC1Q8IX03 1113 aa27.09■■□□□ 1.93
VSX1-201ENST00000376707 METTL22Q9BUU2 404 aaPredicted RBP27.09■■□□□ 1.93
VSX1-201ENST00000376707 BCL2L13Q9BXK5 485 aa27.09■■□□□ 1.93
VSX1-201ENST00000376707 MRS2Q9HD23 443 aa27.09■■□□□ 1.93
VSX1-201ENST00000376707 CWC25Q9NXE8 425 aaPredicted RBP27.09■■□□□ 1.93
VSX1-201ENST00000376707 DUOX1Q9NRD9 1551 aa27.09■■□□□ 1.93
VSX1-201ENST00000376707 C6orf229H3BNL8 230 aa27.08■■□□□ 1.93
VSX1-201ENST00000376707 PCCAP05165 728 aaPredicted RBP27.08■■□□□ 1.93
VSX1-201ENST00000376707 RPS8P62241 208 aaKnown RBP27.08■■□□□ 1.93
VSX1-201ENST00000376707 STK31Q9BXU1 1019 aa27.08■■□□□ 1.93
VSX1-201ENST00000376707 CDHR2Q9BYE9 1310 aa27.08■■□□□ 1.93
VSX1-201ENST00000376707 GPSM2P81274 684 aa27.07■■□□□ 1.92
VSX1-201ENST00000376707 MAP3K2Q9Y2U5 619 aa27.07■■□□□ 1.92
VSX1-201ENST00000376707 VEGFBP49765 207 aa27.06■■□□□ 1.92
VSX1-201ENST00000376707 NCBP3Q53F19 620 aaKnown RBP27.06■■□□□ 1.92
VSX1-201ENST00000376707 ABT1Q9ULW3 272 aaKnown RBP27.06■■□□□ 1.92
VSX1-201ENST00000376707 YDJCA8MPS7 323 aa27.05■■□□□ 1.92
VSX1-201ENST00000376707 RIMBP2O15034 1052 aa27.05■■□□□ 1.92
VSX1-201ENST00000376707 PDE8AO60658 829 aa27.05■■□□□ 1.92
VSX1-201ENST00000376707 DEFB115Q30KQ5 88 aa27.05■■□□□ 1.92
VSX1-201ENST00000376707 CCDC152Q4G0S7 254 aa27.05■■□□□ 1.92
VSX1-201ENST00000376707 KSR2Q6VAB6 950 aa27.05■■□□□ 1.92
VSX1-201ENST00000376707 JARID2Q92833 1246 aaPredicted RBP27.05■■□□□ 1.92
VSX1-201ENST00000376707 EYA3Q99504 573 aa27.05■■□□□ 1.92
VSX1-201ENST00000376707 SEC31BQ9NQW1 1179 aa27.05■■□□□ 1.92
VSX1-201ENST00000376707 POLLQ9UGP5 575 aa27.05■■□□□ 1.92
VSX1-201ENST00000376707 TWISTNBQ3B726 338 aaPredicted RBP27.04■■□□□ 1.92
VSX1-201ENST00000376707 IL16Q14005 1332 aa27.04■■□□□ 1.92
VSX1-201ENST00000376707 COL4A1P02462 1669 aa27.04■■□□□ 1.92
VSX1-201ENST00000376707 PI4KAP2A4QPH2 592 aa27.03■■□□□ 1.92
VSX1-201ENST00000376707 RASSF10A6NK89 507 aa27.03■■□□□ 1.92
VSX1-201ENST00000376707 PI4KAP1Q8N8J0 262 aa27.03■■□□□ 1.92
VSX1-201ENST00000376707 DBNDD1Q9H9R9 158 aa27.03■■□□□ 1.92
VSX1-201ENST00000376707 TRAF5O00463 557 aa27.02■■□□□ 1.92
VSX1-201ENST00000376707 FMR1Q06787 632 aaKnown RBP eCLIP27.02■■□□□ 1.92
VSX1-201ENST00000376707 NEXNQ0ZGT2 675 aa27.02■■□□□ 1.92
VSX1-201ENST00000376707 TNS4Q8IZW8 715 aa27.02■■□□□ 1.92
VSX1-201ENST00000376707 TBC1D16Q8TBP0 767 aa27.02■■□□□ 1.92
VSX1-201ENST00000376707 CCDC85AQ96PX6 553 aaPredicted RBP27.02■■□□□ 1.92
VSX1-201ENST00000376707 ANKIB1Q9P2G1 1089 aa27.01■■□□□ 1.91
VSX1-201ENST00000376707 CNOT7Q9UIV1 285 aaKnown RBP27.01■■□□□ 1.91
VSX1-201ENST00000376707 H7C1D1 291 aa27■■□□□ 1.91
VSX1-201ENST00000376707 PSMD14O00487 310 aa26.99■■□□□ 1.91
VSX1-201ENST00000376707 ECE2O60344 883 aa26.99■■□□□ 1.91
VSX1-201ENST00000376707 SLC4A2P04920 1241 aa26.99■■□□□ 1.91
VSX1-201ENST00000376707 IGKV5-2P06315 115 aa26.99■■□□□ 1.91
VSX1-201ENST00000376707 DOK7Q18PE1 504 aa26.99■■□□□ 1.91
VSX1-201ENST00000376707 AIDAQ96BJ3 306 aa26.99■■□□□ 1.91
VSX1-201ENST00000376707 GPR101Q96P66 508 aaPredicted RBP26.99■■□□□ 1.91
VSX1-201ENST00000376707 ZC3H12CQ9C0D7 883 aaKnown RBP26.99■■□□□ 1.91
VSX1-201ENST00000376707 PODXL2Q9NZ53 605 aa26.99■■□□□ 1.91
VSX1-201ENST00000376707 ZBTB12Q9Y330 459 aaPredicted RBP26.99■■□□□ 1.91
VSX1-201ENST00000376707 UFL1O94874 794 aa26.98■■□□□ 1.91
VSX1-201ENST00000376707 MICALL2Q8IY33 904 aa26.98■■□□□ 1.91
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms