RNA–Protein interactions for RNA: ENST00000310301.8

VPS41-202, Transcript of VPS41, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS41, Length 5,903 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-202ENST00000310301 USP25Q9UHP3 1055 aa9.5□□□□□ -0.89
VPS41-202ENST00000310301 LMTK2Q8IWU2 1503 aa9.5□□□□□ -0.89
VPS41-202ENST00000310301 KIF5CO60282 957 aa9.5□□□□□ -0.89
VPS41-202ENST00000310301 ALDH1B1P30837 517 aa9.5□□□□□ -0.89
VPS41-202ENST00000310301 IRX3P78415 501 aaPredicted RBP9.5□□□□□ -0.89
VPS41-202ENST00000310301 DNAAF4Q8WXU2 420 aa9.5□□□□□ -0.89
VPS41-202ENST00000310301 ZC3H12CQ9C0D7 883 aaKnown RBP9.5□□□□□ -0.89
VPS41-202ENST00000310301 KIF4BQ2VIQ3 1234 aa9.5□□□□□ -0.89
VPS41-202ENST00000310301 TMX1Q9H3N1 280 aa9.5□□□□□ -0.89
VPS41-202ENST00000310301 IKQ13123 557 aaPredicted RBP9.5□□□□□ -0.89
VPS41-202ENST00000310301 ARHGEF25Q86VW2 580 aa9.5□□□□□ -0.89
VPS41-202ENST00000310301 BCS1LQ9Y276 419 aa9.5□□□□□ -0.89
VPS41-202ENST00000310301 SLC5A1P13866 664 aa9.49□□□□□ -0.89
VPS41-202ENST00000310301 MCM5P33992 734 aa9.49□□□□□ -0.89
VPS41-202ENST00000310301 BMS1Q14692 1282 aaKnown RBP9.49□□□□□ -0.89
VPS41-202ENST00000310301 ZSCAN31Q96LW9 406 aaPredicted RBP9.49□□□□□ -0.89
VPS41-202ENST00000310301 RTL1A6NKG5 1358 aa9.49□□□□□ -0.89
VPS41-202ENST00000310301 MAP3K5Q99683 1374 aa9.49□□□□□ -0.89
VPS41-202ENST00000310301 NACAP1Q9BZK3 213 aa9.49□□□□□ -0.89
VPS41-202ENST00000310301 RNMTO43148 476 aaKnown RBP9.49□□□□□ -0.89
VPS41-202ENST00000310301 CNKSR1Q969H4 720 aa9.49□□□□□ -0.89
VPS41-202ENST00000310301 ZNF287Q9HBT7 754 aa9.49□□□□□ -0.89
VPS41-202ENST00000310301 EIF5P55010 431 aaKnown RBP9.49□□□□□ -0.89
VPS41-202ENST00000310301 MVPQ14764 893 aaKnown RBP9.49□□□□□ -0.89
VPS41-202ENST00000310301 SEPT11Q9NVA2 429 aaKnown RBP9.49□□□□□ -0.89
VPS41-202ENST00000310301 BCCIPQ9P287 314 aaKnown RBP eCLIP9.49□□□□□ -0.89
VPS41-202ENST00000310301 JAKMIP1Q96N16 626 aaKnown RBP9.49□□□□□ -0.89
VPS41-202ENST00000310301 RAI14Q9P0K7 980 aa9.49□□□□□ -0.89
VPS41-202ENST00000310301 SLC27A3Q5K4L6 730 aa9.48□□□□□ -0.89
VPS41-202ENST00000310301 SPTY2D1Q68D10 685 aaPredicted RBP9.48□□□□□ -0.89
VPS41-202ENST00000310301 TSR2Q969E8 191 aaKnown RBP9.48□□□□□ -0.89
VPS41-202ENST00000310301 PRIMPOLQ96LW4 560 aa9.48□□□□□ -0.89
VPS41-202ENST00000310301 DCCP43146 1447 aa9.48□□□□□ -0.89
VPS41-202ENST00000310301 FER1L4A9Z1Z3 1794 aa9.48□□□□□ -0.89
VPS41-202ENST00000310301 SSFA2P28290 1259 aa9.48□□□□□ -0.89
VPS41-202ENST00000310301 ANKRD13DQ6ZTN6 518 aa9.48□□□□□ -0.89
VPS41-202ENST00000310301 TNPO1Q92973 898 aaKnown RBP9.48□□□□□ -0.89
VPS41-202ENST00000310301 ZC3H13Q5T200 1668 aaKnown RBP9.48□□□□□ -0.89
VPS41-202ENST00000310301 C1orf167Q5SNV9 1468 aa9.48□□□□□ -0.89
VPS41-202ENST00000310301 ARHGAP27Q6ZUM4 889 aa9.48□□□□□ -0.89
VPS41-202ENST00000310301 BABAM1Q9NWV8 329 aa9.48□□□□□ -0.89
VPS41-202ENST00000310301 KIF24Q5T7B8 1368 aa9.48□□□□□ -0.89
VPS41-202ENST00000310301 BLOC1S2Q6QNY1 142 aa9.48□□□□□ -0.89
VPS41-202ENST00000310301 CCDC91Q7Z6B0 441 aa9.48□□□□□ -0.89
VPS41-202ENST00000310301 PTCH1Q13635 1447 aa9.47□□□□□ -0.89
VPS41-202ENST00000310301 KRT222Q8N1A0 295 aa9.47□□□□□ -0.89
VPS41-202ENST00000310301 ZHX3Q9H4I2 956 aa9.47□□□□□ -0.89
VPS41-202ENST00000310301 SBNO2Q9Y2G9 1366 aa9.47□□□□□ -0.89
VPS41-202ENST00000310301 SOS1Q07889 1333 aaPredicted RBP9.47□□□□□ -0.89
VPS41-202ENST00000310301 CLCN1P35523 988 aa9.47□□□□□ -0.89
VPS41-202ENST00000310301 CTR9Q6PD62 1173 aa9.47□□□□□ -0.89
VPS41-202ENST00000310301 TRIM22Q8IYM9 498 aa9.47□□□□□ -0.89
VPS41-202ENST00000310301 KIF1BO60333 1816 aa9.47□□□□□ -0.89
VPS41-202ENST00000310301 ADCY5O95622 1261 aa9.47□□□□□ -0.89
VPS41-202ENST00000310301 ABCA6Q8N139 1617 aa9.47□□□□□ -0.89
VPS41-202ENST00000310301 GRIN3BO60391 1043 aa9.47□□□□□ -0.89
VPS41-202ENST00000310301 IFFO1Q0D2I5 559 aa9.47□□□□□ -0.89
VPS41-202ENST00000310301 ILDR1Q86SU0 546 aaPredicted RBP9.47□□□□□ -0.89
VPS41-202ENST00000310301 ANKRD2Q9GZV1 360 aa9.47□□□□□ -0.89
VPS41-202ENST00000310301 ANO10Q9NW15 660 aa9.47□□□□□ -0.89
VPS41-202ENST00000310301 TOP1P11387 765 aaKnown RBP9.47□□□□□ -0.89
VPS41-202ENST00000310301 HOOK2Q96ED9 719 aa9.47□□□□□ -0.89
VPS41-202ENST00000310301 GCC2Q8IWJ2 1684 aa9.47□□□□□ -0.89
VPS41-202ENST00000310301 OVOS2A0A0G2JMS6 1433 aa9.47□□□□□ -0.89
VPS41-202ENST00000310301 OVOS2A0A0J9YW53 1432 aa9.47□□□□□ -0.89
VPS41-202ENST00000310301 OVOS2Q6IE36 1432 aa9.47□□□□□ -0.89
VPS41-202ENST00000310301 POTEB2H3BUK9 544 aa9.46□□□□□ -0.89
VPS41-202ENST00000310301 CEP135Q66GS9 1140 aa9.46□□□□□ -0.89
VPS41-202ENST00000310301 ZNF397Q8NF99 534 aaPredicted RBP9.46□□□□□ -0.89
VPS41-202ENST00000310301 LRP2BPQ9P2M1 347 aa9.46□□□□□ -0.89
VPS41-202ENST00000310301 INO80Q9ULG1 1556 aaPredicted RBP9.46□□□□□ -0.89
VPS41-202ENST00000310301 SLC39A6Q13433 755 aa9.46□□□□□ -0.89
VPS41-202ENST00000310301 IMMTQ16891 758 aaKnown RBP9.46□□□□□ -0.89
VPS41-202ENST00000310301 DZIP1Q86YF9 867 aaKnown RBP9.46□□□□□ -0.89
VPS41-202ENST00000310301 MIS18AQ9NYP9 233 aa9.46□□□□□ -0.89
VPS41-202ENST00000310301 SPA17Q15506 151 aa9.46□□□□□ -0.9
VPS41-202ENST00000310301 SKAP1Q86WV1 359 aa9.46□□□□□ -0.9
VPS41-202ENST00000310301 FAM83GA6ND36 823 aa9.46□□□□□ -0.9
VPS41-202ENST00000310301 CCDC69A6NI79 296 aa9.46□□□□□ -0.9
VPS41-202ENST00000310301 CRACR2BQ8N4Y2 399 aaPredicted RBP9.46□□□□□ -0.9
VPS41-202ENST00000310301 ZGPATQ8N5A5 531 aaKnown RBP9.46□□□□□ -0.9
VPS41-202ENST00000310301 TBC1D2Q9BYX2 928 aa9.46□□□□□ -0.9
VPS41-202ENST00000310301 NEMFO60524 1076 aa9.46□□□□□ -0.9
VPS41-202ENST00000310301 FERMT3Q86UX7 667 aa9.46□□□□□ -0.9
VPS41-202ENST00000310301 GOPCQ9HD26 462 aa9.46□□□□□ -0.9
VPS41-202ENST00000310301 KAT6BQ8WYB5 2073 aa9.46□□□□□ -0.9
VPS41-202ENST00000310301 INSRP06213 1382 aa9.45□□□□□ -0.9
VPS41-202ENST00000310301 CCDC175P0C221 793 aa9.45□□□□□ -0.9
VPS41-202ENST00000310301 CWC27Q6UX04 472 aaKnown RBP9.45□□□□□ -0.9
VPS41-202ENST00000310301 ZNF804AQ7Z570 1209 aa9.45□□□□□ -0.9
VPS41-202ENST00000310301 CEP63Q96MT8 703 aa9.45□□□□□ -0.9
VPS41-202ENST00000310301 NOL7Q9UMY1 257 aaKnown RBP9.45□□□□□ -0.9
VPS41-202ENST00000310301 CASTP20810 708 aaKnown RBP9.45□□□□□ -0.9
VPS41-202ENST00000310301 TNNI2P48788 182 aa9.45□□□□□ -0.9
VPS41-202ENST00000310301 SNW1Q13573 536 aaKnown RBP9.45□□□□□ -0.9
VPS41-202ENST00000310301 SMC1AQ14683 1233 aaKnown RBP9.45□□□□□ -0.9
VPS41-202ENST00000310301 LUZP1Q86V48 1076 aa9.45□□□□□ -0.9
VPS41-202ENST00000310301 NIM1KQ8IY84 436 aa9.45□□□□□ -0.9
VPS41-202ENST00000310301 GTPBP4Q9BZE4 634 aaKnown RBP9.45□□□□□ -0.9
VPS41-202ENST00000310301 PAXBP1Q9Y5B6 917 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms