RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 SLC17A1Q14916 467 aa16.92■□□□□ 0.3
CLN3-262ENST00000637699 CR1LQ2VPA4 569 aa16.92■□□□□ 0.3
CLN3-262ENST00000637699 FRRS1Q6ZNA5 592 aa16.92■□□□□ 0.3
CLN3-262ENST00000637699 SPATA19Q7Z5L4 167 aa16.92■□□□□ 0.3
CLN3-262ENST00000637699 MIPOL1Q8TD10 442 aa16.92■□□□□ 0.3
CLN3-262ENST00000637699 CNOT9Q92600 299 aaKnown RBP16.92■□□□□ 0.3
CLN3-262ENST00000637699 DDIT4LQ96D03 193 aa16.92■□□□□ 0.3
CLN3-262ENST00000637699 APOPT1Q96IL0 206 aa16.92■□□□□ 0.3
CLN3-262ENST00000637699 SOX7Q9BT81 388 aa16.92■□□□□ 0.3
CLN3-262ENST00000637699 SAP130Q9H0E3 1048 aa16.92■□□□□ 0.3
CLN3-262ENST00000637699 EXOSC3Q9NQT5 275 aaKnown RBP16.92■□□□□ 0.3
CLN3-262ENST00000637699 ST6GALNAC1Q9NSC7 600 aaPredicted RBP16.92■□□□□ 0.3
CLN3-262ENST00000637699 SLC17A7Q9P2U7 560 aa16.92■□□□□ 0.3
CLN3-262ENST00000637699 TMEM72A0PK05 275 aa16.91■□□□□ 0.3
CLN3-262ENST00000637699 CPSF4O95639 269 aaKnown RBP16.91■□□□□ 0.3
CLN3-262ENST00000637699 ZNF23P17027 643 aa16.91■□□□□ 0.3
CLN3-262ENST00000637699 HTR3AP46098 478 aa16.91■□□□□ 0.3
CLN3-262ENST00000637699 FUT5Q11128 374 aa16.91■□□□□ 0.3
CLN3-262ENST00000637699 GPAT3Q53EU6 434 aa16.91■□□□□ 0.3
CLN3-262ENST00000637699 AAED1Q7RTV5 226 aa16.91■□□□□ 0.3
CLN3-262ENST00000637699 ANKRD46Q86W74 232 aa16.91■□□□□ 0.3
CLN3-262ENST00000637699 OIT3Q8WWZ8 545 aa16.91■□□□□ 0.3
CLN3-262ENST00000637699 PMM1Q92871 262 aa16.91■□□□□ 0.3
CLN3-262ENST00000637699 KCNS3Q9BQ31 491 aa16.91■□□□□ 0.3
CLN3-262ENST00000637699 BPESC1Q9GZL8 116 aa16.91■□□□□ 0.3
CLN3-262ENST00000637699 POLE3Q9NRF9 147 aa16.91■□□□□ 0.3
CLN3-262ENST00000637699 OSGIN1Q9UJX0 560 aa16.91■□□□□ 0.3
CLN3-262ENST00000637699 IGHV1-18A0A0C4DH31 117 aa16.9■□□□□ 0.3
CLN3-262ENST00000637699 ZC3H12DA2A288 527 aaKnown RBP16.9■□□□□ 0.3
CLN3-262ENST00000637699 LRP5LA4QPB2 252 aa16.9■□□□□ 0.3
CLN3-262ENST00000637699 RNASET2O00584 256 aaKnown RBP16.9■□□□□ 0.3
CLN3-262ENST00000637699 ZNF500O60304 480 aaPredicted RBP16.9■□□□□ 0.3
CLN3-262ENST00000637699 PGRP06401 933 aa16.9■□□□□ 0.3
CLN3-262ENST00000637699 GUSBP08236 651 aa16.9■□□□□ 0.3
CLN3-262ENST00000637699 TACR3P29371 465 aa16.9■□□□□ 0.3
CLN3-262ENST00000637699 POLR2HP52434 150 aaKnown RBP16.9■□□□□ 0.3
CLN3-262ENST00000637699 OTUD3Q5T2D3 398 aaPredicted RBP16.9■□□□□ 0.3
CLN3-262ENST00000637699 WDR93Q6P2C0 686 aa16.9■□□□□ 0.3
CLN3-262ENST00000637699 VHLLQ6RSH7 139 aa16.9■□□□□ 0.3
CLN3-262ENST00000637699 RIBC1Q8N443 379 aaPredicted RBP16.9■□□□□ 0.3
CLN3-262ENST00000637699 ZIC4Q8N9L1 334 aa16.9■□□□□ 0.3
CLN3-262ENST00000637699 AURKBQ96GD4 344 aaPredicted RBP16.9■□□□□ 0.3
CLN3-262ENST00000637699 C1orf159Q96HA4 380 aa16.9■□□□□ 0.3
CLN3-262ENST00000637699 ZNF385AQ96PM9 386 aaKnown RBP16.9■□□□□ 0.3
CLN3-262ENST00000637699 MYOZ1Q9NP98 299 aaPredicted RBP16.9■□□□□ 0.3
CLN3-262ENST00000637699 CA10Q9NS85 328 aa16.9■□□□□ 0.3
CLN3-262ENST00000637699 MKS1Q9NXB0 559 aa16.9■□□□□ 0.3
CLN3-262ENST00000637699 ZNF208O43345 1280 aa16.89■□□□□ 0.29
CLN3-262ENST00000637699 SPAG7O75391 227 aa16.89■□□□□ 0.29
CLN3-262ENST00000637699 KRT33AO76009 404 aa16.89■□□□□ 0.29
CLN3-262ENST00000637699 AKR7A3O95154 331 aa16.89■□□□□ 0.29
CLN3-262ENST00000637699 OR4A8P0C604 315 aa16.89■□□□□ 0.29
CLN3-262ENST00000637699 UQCRC2P22695 453 aa16.89■□□□□ 0.29
CLN3-262ENST00000637699 HPCAP84074 193 aa16.89■□□□□ 0.29
CLN3-262ENST00000637699 EMX2Q04743 252 aa16.89■□□□□ 0.29
CLN3-262ENST00000637699 MAD2L1Q13257 205 aaPredicted RBP16.89■□□□□ 0.29
CLN3-262ENST00000637699 C1QTNF12Q5T7M4 302 aa16.89■□□□□ 0.29
CLN3-262ENST00000637699 AP1ARQ63HQ0 302 aa16.89■□□□□ 0.29
CLN3-262ENST00000637699 PAQR6Q6TCH4 344 aa16.89■□□□□ 0.29
CLN3-262ENST00000637699 TMEM99Q8N816 258 aa16.89■□□□□ 0.29
CLN3-262ENST00000637699 POMGNT2Q8NAT1 580 aa16.89■□□□□ 0.29
CLN3-262ENST00000637699 ZNF540Q8NDQ6 660 aa16.89■□□□□ 0.29
CLN3-262ENST00000637699 TMEM45BQ96B21 275 aa16.89■□□□□ 0.29
CLN3-262ENST00000637699 PPP1R36Q96LQ0 422 aa16.89■□□□□ 0.29
CLN3-262ENST00000637699 SLC38A2Q96QD8 506 aa16.89■□□□□ 0.29
CLN3-262ENST00000637699 NOP53Q9NZM5 478 aaKnown RBP16.89■□□□□ 0.29
CLN3-262ENST00000637699 LGALS13Q9UHV8 139 aa16.89■□□□□ 0.29
CLN3-262ENST00000637699 PRAMEF27A3QJZ7 478 aa16.88■□□□□ 0.29
CLN3-262ENST00000637699 B9A039 149 aa16.88■□□□□ 0.29
CLN3-262ENST00000637699 CRYAAP02489 173 aa16.88■□□□□ 0.29
CLN3-262ENST00000637699 KHKP50053 298 aa16.88■□□□□ 0.29
CLN3-262ENST00000637699 IFFO1Q0D2I5 559 aa16.88■□□□□ 0.29
CLN3-262ENST00000637699 CEACAM7Q14002 265 aa16.88■□□□□ 0.29
CLN3-262ENST00000637699 ADIPOQQ15848 244 aa16.88■□□□□ 0.29
CLN3-262ENST00000637699 TBRG1Q3YBR2 411 aa16.88■□□□□ 0.29
CLN3-262ENST00000637699 SAXO2Q658L1 398 aa16.88■□□□□ 0.29
CLN3-262ENST00000637699 GPAT4Q86UL3 456 aa16.88■□□□□ 0.29
CLN3-262ENST00000637699 OR9K2Q8NGE7 335 aa16.88■□□□□ 0.29
CLN3-262ENST00000637699 OR8J2Q8NGG1 315 aa16.88■□□□□ 0.29
CLN3-262ENST00000637699 TMEM45AQ9NWC5 275 aa16.88■□□□□ 0.29
CLN3-262ENST00000637699 PRSS51A0A1B0GVH4 220 aa16.87■□□□□ 0.29
CLN3-262ENST00000637699 TCF21O43680 179 aa16.87■□□□□ 0.29
CLN3-262ENST00000637699 LGI1O95970 557 aa16.87■□□□□ 0.29
CLN3-262ENST00000637699 C1QCP02747 245 aa16.87■□□□□ 0.29
CLN3-262ENST00000637699 CREB1P16220 341 aa16.87■□□□□ 0.29
CLN3-262ENST00000637699 CHI3L1P36222 383 aaPredicted RBP16.87■□□□□ 0.29
CLN3-262ENST00000637699 SERPINB5P36952 375 aa16.87■□□□□ 0.29
CLN3-262ENST00000637699 SRP14P37108 136 aaKnown RBP16.87■□□□□ 0.29
CLN3-262ENST00000637699 SLC1A3P43003 542 aa16.87■□□□□ 0.29
CLN3-262ENST00000637699 TUBA1BP68363 451 aa16.87■□□□□ 0.29
CLN3-262ENST00000637699 TUBA4AP68366 448 aa16.87■□□□□ 0.29
CLN3-262ENST00000637699 LGALS3BPQ08380 585 aa16.87■□□□□ 0.29
CLN3-262ENST00000637699 OR7A5Q15622 319 aa16.87■□□□□ 0.29
CLN3-262ENST00000637699 ANKRD16Q6P6B7 361 aa16.87■□□□□ 0.29
CLN3-262ENST00000637699 TUBA1AQ71U36 451 aa16.87■□□□□ 0.29
CLN3-262ENST00000637699 ABHD12BQ7Z5M8 362 aaPredicted RBP16.87■□□□□ 0.29
CLN3-262ENST00000637699 RFLNBQ8N5W9 214 aa16.87■□□□□ 0.29
CLN3-262ENST00000637699 OR1K1Q8NGR3 316 aa16.87■□□□□ 0.29
CLN3-262ENST00000637699 TCP10LQ8TDR4 215 aa16.87■□□□□ 0.29
CLN3-262ENST00000637699 KATNB1Q9BVA0 655 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms