RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 CDH24Q86UP0 819 aa11.37□□□□□ -0.59
PNKP-217ENST00000625216 GRAMD2AQ8IUY3 354 aa11.37□□□□□ -0.59
PNKP-217ENST00000625216 OR4C15Q8NGM1 316 aa11.37□□□□□ -0.59
PNKP-217ENST00000625216 CNOT9Q92600 299 aaKnown RBP11.37□□□□□ -0.59
PNKP-217ENST00000625216 EME1Q96AY2 570 aa11.37□□□□□ -0.59
PNKP-217ENST00000625216 ARSGQ96EG1 525 aa11.37□□□□□ -0.59
PNKP-217ENST00000625216 DHRS1Q96LJ7 313 aa11.37□□□□□ -0.59
PNKP-217ENST00000625216 PIP5K1AQ99755 562 aa11.37□□□□□ -0.59
PNKP-217ENST00000625216 SLC29A1Q99808 456 aa11.37□□□□□ -0.59
PNKP-217ENST00000625216 RTN4RQ9BZR6 473 aa11.37□□□□□ -0.59
PNKP-217ENST00000625216 KLHL4Q9C0H6 718 aa11.37□□□□□ -0.59
PNKP-217ENST00000625216 HOXD1Q9GZZ0 328 aa11.37□□□□□ -0.59
PNKP-217ENST00000625216 PIGMQ9H3S5 423 aa11.37□□□□□ -0.59
PNKP-217ENST00000625216 COQ10BQ9H8M1 238 aa11.37□□□□□ -0.59
PNKP-217ENST00000625216 ST6GALNAC1Q9NSC7 600 aaPredicted RBP11.37□□□□□ -0.59
PNKP-217ENST00000625216 DNAJB12Q9NXW2 375 aaKnown RBP11.37□□□□□ -0.59
PNKP-217ENST00000625216 SLC13A4Q9UKG4 626 aa11.37□□□□□ -0.59
PNKP-217ENST00000625216 A4GNTQ9UNA3 340 aa11.37□□□□□ -0.59
PNKP-217ENST00000625216 ZNF232Q9UNY5 417 aa11.37□□□□□ -0.59
PNKP-217ENST00000625216 ZNF337Q9Y3M9 751 aa11.37□□□□□ -0.59
PNKP-217ENST00000625216 MAGED1Q9Y5V3 778 aaPredicted RBP11.37□□□□□ -0.59
PNKP-217ENST00000625216 LYVE1Q9Y5Y7 322 aa11.37□□□□□ -0.59
PNKP-217ENST00000625216 AP4B1Q9Y6B7 739 aa11.37□□□□□ -0.59
PNKP-217ENST00000625216 U3KQV3 271 aa11.37□□□□□ -0.59
PNKP-217ENST00000625216 CSMD2Q7Z408 3487 aa11.37□□□□□ -0.59
PNKP-217ENST00000625216 PCNX3Q9H6A9 2034 aa11.36□□□□□ -0.59
PNKP-217ENST00000625216 POLQO75417 2590 aa11.36□□□□□ -0.59
PNKP-217ENST00000625216 A0A1W2PQD3 144 aa11.36□□□□□ -0.59
PNKP-217ENST00000625216 OR2M5A3KFT3 312 aa11.36□□□□□ -0.59
PNKP-217ENST00000625216 FAM221AA4D161 298 aa11.36□□□□□ -0.59
PNKP-217ENST00000625216 SERINC4A6NH21 518 aa11.36□□□□□ -0.59
PNKP-217ENST00000625216 C17orf51A8MQB3 221 aa11.36□□□□□ -0.59
PNKP-217ENST00000625216 EEF1E1-BLOC1S5C9J1V9 151 aa11.36□□□□□ -0.59
PNKP-217ENST00000625216 SCDO00767 359 aa11.36□□□□□ -0.59
PNKP-217ENST00000625216 EI24O14681 340 aa11.36□□□□□ -0.59
PNKP-217ENST00000625216 EEF1E1O43324 174 aaKnown RBP11.36□□□□□ -0.59
PNKP-217ENST00000625216 OIP5O43482 229 aa11.36□□□□□ -0.59
PNKP-217ENST00000625216 ADAM11O75078 769 aa11.36□□□□□ -0.59
PNKP-217ENST00000625216 CTAG2O75638 210 aa11.36□□□□□ -0.59
PNKP-217ENST00000625216 PRG2P13727 222 aa11.36□□□□□ -0.59
PNKP-217ENST00000625216 RHCEP18577 417 aa11.36□□□□□ -0.59
PNKP-217ENST00000625216 FPR1P21462 350 aa11.36□□□□□ -0.59
PNKP-217ENST00000625216 AQP4P55087 323 aa11.36□□□□□ -0.59
PNKP-217ENST00000625216 CDH12P55289 794 aa11.36□□□□□ -0.59
PNKP-217ENST00000625216 RPS3AP61247 264 aaKnown RBP11.36□□□□□ -0.59
PNKP-217ENST00000625216 DAZAP2Q15038 168 aaPredicted RBP11.36□□□□□ -0.59
PNKP-217ENST00000625216 KLHL26Q53HC5 615 aa11.36□□□□□ -0.59
PNKP-217ENST00000625216 ANKRD34AQ69YU3 496 aa11.36□□□□□ -0.59
PNKP-217ENST00000625216 P4HA3Q7Z4N8 544 aa11.36□□□□□ -0.59
PNKP-217ENST00000625216 TMEM200AQ86VY9 491 aa11.36□□□□□ -0.59
PNKP-217ENST00000625216 LSRQ86X29 649 aaPredicted RBP11.36□□□□□ -0.59
PNKP-217ENST00000625216 CBR4Q8N4T8 237 aa11.36□□□□□ -0.59
PNKP-217ENST00000625216 GATSQ8NAP1 163 aa11.36□□□□□ -0.59
PNKP-217ENST00000625216 FAM71CQ8NEG0 241 aa11.36□□□□□ -0.59
PNKP-217ENST00000625216 OR5K1Q8NHB7 308 aa11.36□□□□□ -0.59
PNKP-217ENST00000625216 INTS12Q96CB8 462 aaKnown RBP11.36□□□□□ -0.59
PNKP-217ENST00000625216 PRRC1Q96M27 445 aa11.36□□□□□ -0.59
PNKP-217ENST00000625216 ZNF347Q96SE7 839 aa11.36□□□□□ -0.59
PNKP-217ENST00000625216 C9orf16Q9BUW7 83 aa11.36□□□□□ -0.59
PNKP-217ENST00000625216 PRR14Q9BWN1 585 aa11.36□□□□□ -0.59
PNKP-217ENST00000625216 CTPS2Q9NRF8 586 aa11.36□□□□□ -0.59
PNKP-217ENST00000625216 KLHL28Q9NXS3 571 aa11.36□□□□□ -0.59
PNKP-217ENST00000625216 CRIM1Q9NZV1 1036 aa11.36□□□□□ -0.59
PNKP-217ENST00000625216 RHCGQ9UBD6 479 aa11.36□□□□□ -0.59
PNKP-217ENST00000625216 SAMHD1Q9Y3Z3 626 aaKnown RBP11.36□□□□□ -0.59
PNKP-217ENST00000625216 ZNF175Q9Y473 711 aa11.36□□□□□ -0.59
PNKP-217ENST00000625216 FREM3P0C091 2139 aa11.36□□□□□ -0.59
PNKP-217ENST00000625216 CCDC168Q8NDH2 2452 aa11.35□□□□□ -0.59
PNKP-217ENST00000625216 HCFC1P51610 2035 aa11.35□□□□□ -0.59
PNKP-217ENST00000625216 ANKHD1Q8IWZ3 2542 aaKnown RBP11.35□□□□□ -0.59
PNKP-217ENST00000625216 TUBAL3A6NHL2 446 aa11.35□□□□□ -0.59
PNKP-217ENST00000625216 SLC22A20A6NK97 555 aa11.35□□□□□ -0.59
PNKP-217ENST00000625216 ADAMDEC1O15204 470 aa11.35□□□□□ -0.59
PNKP-217ENST00000625216 E2F6O75461 281 aa11.35□□□□□ -0.59
PNKP-217ENST00000625216 GOSR1O95249 250 aa11.35□□□□□ -0.59
PNKP-217ENST00000625216 GKN3PP0CG01 181 aa11.35□□□□□ -0.59
PNKP-217ENST00000625216 EPXP11678 715 aa11.35□□□□□ -0.59
PNKP-217ENST00000625216 ZNF17P17021 662 aa11.35□□□□□ -0.59
PNKP-217ENST00000625216 TCEA1P23193 301 aaKnown RBP11.35□□□□□ -0.59
PNKP-217ENST00000625216 HTR2AP28223 471 aa11.35□□□□□ -0.59
PNKP-217ENST00000625216 DNAJA1P31689 397 aaKnown RBP11.35□□□□□ -0.59
PNKP-217ENST00000625216 LIMS1P48059 325 aa11.35□□□□□ -0.59
PNKP-217ENST00000625216 PCYT1AP49585 367 aa11.35□□□□□ -0.59
PNKP-217ENST00000625216 AGFG1P52594 562 aaKnown RBP11.35□□□□□ -0.59
PNKP-217ENST00000625216 FOXF2Q12947 444 aa11.35□□□□□ -0.59
PNKP-217ENST00000625216 PIN1Q13526 163 aaPredicted RBP11.35□□□□□ -0.59
PNKP-217ENST00000625216 EXOC3L2Q2M3D2 409 aa11.35□□□□□ -0.59
PNKP-217ENST00000625216 TMEM44Q2T9K0 475 aa11.35□□□□□ -0.59
PNKP-217ENST00000625216 PPP4R4Q6NUP7 873 aa11.35□□□□□ -0.59
PNKP-217ENST00000625216 SHQ1Q6PI26 577 aaKnown RBP11.35□□□□□ -0.59
PNKP-217ENST00000625216 CYP4Z1Q86W10 505 aa11.35□□□□□ -0.59
PNKP-217ENST00000625216 CMIPQ8IY22 773 aa11.35□□□□□ -0.59
PNKP-217ENST00000625216 SVOPLQ8N434 492 aa11.35□□□□□ -0.59
PNKP-217ENST00000625216 GALNT4Q8N4A0 578 aa11.35□□□□□ -0.59
PNKP-217ENST00000625216 ZNF527Q8NB42 609 aa11.35□□□□□ -0.59
PNKP-217ENST00000625216 PIK3C3Q8NEB9 887 aa11.35□□□□□ -0.59
PNKP-217ENST00000625216 OIT3Q8WWZ8 545 aa11.35□□□□□ -0.59
PNKP-217ENST00000625216 ZBTB8AQ96BR9 441 aa11.35□□□□□ -0.59
PNKP-217ENST00000625216 EPYCQ99645 322 aa11.35□□□□□ -0.59
PNKP-217ENST00000625216 MCHR1Q99705 422 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms