RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 CTSSP25774 331 aa12.02□□□□□ -0.49
LINC00540-202ENST00000616974 EEFSECP57772 596 aaKnown RBP12.02□□□□□ -0.49
LINC00540-202ENST00000616974 RPS3AP61247 264 aaKnown RBP12.02□□□□□ -0.49
LINC00540-202ENST00000616974 MTFR2Q6P444 385 aa12.02□□□□□ -0.49
LINC00540-202ENST00000616974 ZNF474Q6S9Z5 364 aaPredicted RBP12.02□□□□□ -0.49
LINC00540-202ENST00000616974 ZNF440Q8IYI8 595 aa12.02□□□□□ -0.49
LINC00540-202ENST00000616974 TMEM99Q8N816 258 aa12.02□□□□□ -0.49
LINC00540-202ENST00000616974 TAAR8Q969N4 342 aa12.02□□□□□ -0.49
LINC00540-202ENST00000616974 PSD2Q9BQI7 771 aa12.02□□□□□ -0.49
LINC00540-202ENST00000616974 PRRG4Q9BZD6 226 aa12.02□□□□□ -0.49
LINC00540-202ENST00000616974 KPNA4O00629 521 aaPredicted RBP12.01□□□□□ -0.49
LINC00540-202ENST00000616974 FFAR1O14842 300 aa12.01□□□□□ -0.49
LINC00540-202ENST00000616974 DIRAS1O95057 198 aa12.01□□□□□ -0.49
LINC00540-202ENST00000616974 CGAP01215 116 aa12.01□□□□□ -0.49
LINC00540-202ENST00000616974 RAC3P60763 192 aa12.01□□□□□ -0.49
LINC00540-202ENST00000616974 MS4A2Q01362 244 aa12.01□□□□□ -0.49
LINC00540-202ENST00000616974 OR7A5Q15622 319 aa12.01□□□□□ -0.49
LINC00540-202ENST00000616974 INTS11Q5TA45 600 aaKnown RBP12.01□□□□□ -0.49
LINC00540-202ENST00000616974 SP5Q6BEB4 398 aaPredicted RBP12.01□□□□□ -0.49
LINC00540-202ENST00000616974 ERICH5Q6P6B1 374 aa12.01□□□□□ -0.49
LINC00540-202ENST00000616974 ARPINQ7Z6K5 226 aa12.01□□□□□ -0.49
LINC00540-202ENST00000616974 NKAIN4Q8IVV8 208 aa12.01□□□□□ -0.49
LINC00540-202ENST00000616974 HSH2DQ96JZ2 352 aa12.01□□□□□ -0.49
LINC00540-202ENST00000616974 TM9SF2Q99805 663 aa12.01□□□□□ -0.49
LINC00540-202ENST00000616974 AMBRA1Q9C0C7 1298 aa12.01□□□□□ -0.49
LINC00540-202ENST00000616974 CACYBPQ9HB71 228 aaKnown RBP12.01□□□□□ -0.49
LINC00540-202ENST00000616974 SLC7A7Q9UM01 511 aa12.01□□□□□ -0.49
LINC00540-202ENST00000616974 TEP1Q99973 2627 aaKnown RBP12.01□□□□□ -0.49
LINC00540-202ENST00000616974 HSPB2A8KAH6 182 aa12.01□□□□□ -0.49
LINC00540-202ENST00000616974 SYT5O00445 386 aa12.01□□□□□ -0.49
LINC00540-202ENST00000616974 IGHV3-9P01782 118 aa12.01□□□□□ -0.49
LINC00540-202ENST00000616974 ATP6V1B2P21281 511 aa12.01□□□□□ -0.49
LINC00540-202ENST00000616974 AGTR1P30556 359 aa12.01□□□□□ -0.49
LINC00540-202ENST00000616974 ERFP50548 548 aa12.01□□□□□ -0.49
LINC00540-202ENST00000616974 P2RY4P51582 365 aa12.01□□□□□ -0.49
LINC00540-202ENST00000616974 OR2B6P58173 313 aa12.01□□□□□ -0.49
LINC00540-202ENST00000616974 TSC22D1Q15714 1073 aa12.01□□□□□ -0.49
LINC00540-202ENST00000616974 HSPB2Q16082 182 aa12.01□□□□□ -0.49
LINC00540-202ENST00000616974 C1orf140Q5VVS0 124 aa12.01□□□□□ -0.49
LINC00540-202ENST00000616974 GLYATQ6IB77 296 aa12.01□□□□□ -0.49
LINC00540-202ENST00000616974 CYP2R1Q6VVX0 501 aa12.01□□□□□ -0.49
LINC00540-202ENST00000616974 ZNF610Q8N9Z0 462 aa12.01□□□□□ -0.49
LINC00540-202ENST00000616974 SLC25A36Q96CQ1 311 aa12.01□□□□□ -0.49
LINC00540-202ENST00000616974 SLC7A6OSQ96CW6 309 aaPredicted RBP12.01□□□□□ -0.49
LINC00540-202ENST00000616974 DTNBP1Q96EV8 351 aa12.01□□□□□ -0.49
LINC00540-202ENST00000616974 MOGAT1Q96PD6 335 aa12.01□□□□□ -0.49
LINC00540-202ENST00000616974 PRSS27Q9BQR3 290 aa12.01□□□□□ -0.49
LINC00540-202ENST00000616974 JKAMPQ9P055 326 aa12.01□□□□□ -0.49
LINC00540-202ENST00000616974 TESQ9UGI8 421 aaKnown RBP12.01□□□□□ -0.49
LINC00540-202ENST00000616974 LIPT2A6NK58 231 aa12□□□□□ -0.49
LINC00540-202ENST00000616974 ZNF716A6NP11 495 aa12□□□□□ -0.49
LINC00540-202ENST00000616974 FTCDNL1E5RQL4 147 aa12□□□□□ -0.49
LINC00540-202ENST00000616974 GSTA4O15217 222 aa12□□□□□ -0.49
LINC00540-202ENST00000616974 FUT1P19526 365 aa12□□□□□ -0.49
LINC00540-202ENST00000616974 AGAP20933 346 aa12□□□□□ -0.49
LINC00540-202ENST00000616974 CCKARP32238 428 aa12□□□□□ -0.49
LINC00540-202ENST00000616974 SELENOWP63302 87 aa12□□□□□ -0.49
LINC00540-202ENST00000616974 H3F3AP84243 136 aa12□□□□□ -0.49
LINC00540-202ENST00000616974 FAM27E3Q08E93 113 aa12□□□□□ -0.49
LINC00540-202ENST00000616974 EID3Q8N140 333 aa12□□□□□ -0.49
LINC00540-202ENST00000616974 SLC38A4Q969I6 547 aa12□□□□□ -0.49
LINC00540-202ENST00000616974 CPNE4Q96A23 557 aaPredicted RBP12□□□□□ -0.49
LINC00540-202ENST00000616974 SERINC1Q9NRX5 453 aa12□□□□□ -0.49
LINC00540-202ENST00000616974 ZNF629Q9UEG4 869 aaPredicted RBP12□□□□□ -0.49
LINC00540-202ENST00000616974 MCTS1Q9ULC4 181 aaKnown RBP12□□□□□ -0.49
LINC00540-202ENST00000616974 ZNF175Q9Y473 711 aa12□□□□□ -0.49
LINC00540-202ENST00000616974 ELOA3DA6NLF2 546 aaPredicted RBP11.99□□□□□ -0.49
LINC00540-202ENST00000616974 ARPC2O15144 300 aa11.99□□□□□ -0.49
LINC00540-202ENST00000616974 ZNF208O43345 1280 aa11.99□□□□□ -0.49
LINC00540-202ENST00000616974 UQCRC1P31930 480 aa11.99□□□□□ -0.49
LINC00540-202ENST00000616974 FOXG1P55316 489 aaPredicted RBP11.99□□□□□ -0.49
LINC00540-202ENST00000616974 FXNQ16595 210 aa11.99□□□□□ -0.49
LINC00540-202ENST00000616974 EXOC3L2Q2M3D2 409 aa11.99□□□□□ -0.49
LINC00540-202ENST00000616974 ELOA3BQ3SY89 546 aa11.99□□□□□ -0.49
LINC00540-202ENST00000616974 CBLL1Q75N03 491 aa11.99□□□□□ -0.49
LINC00540-202ENST00000616974 FAM214BQ7L5A3 538 aa11.99□□□□□ -0.49
LINC00540-202ENST00000616974 GDF7Q7Z4P5 450 aa11.99□□□□□ -0.49
LINC00540-202ENST00000616974 LRRC17Q8N6Y2 441 aa11.99□□□□□ -0.49
LINC00540-202ENST00000616974 ELOA3Q8NG57 546 aa11.99□□□□□ -0.49
LINC00540-202ENST00000616974 TMEM255BQ8WV15 326 aa11.99□□□□□ -0.49
LINC00540-202ENST00000616974 ASB5Q8WWX0 329 aa11.99□□□□□ -0.49
LINC00540-202ENST00000616974 FAM162AQ96A26 154 aa11.99□□□□□ -0.49
LINC00540-202ENST00000616974 CCDC124Q96CT7 223 aaKnown RBP11.99□□□□□ -0.49
LINC00540-202ENST00000616974 ZNF559Q9BR84 538 aa11.99□□□□□ -0.49
LINC00540-202ENST00000616974 ARMC7Q9H6L4 198 aa11.99□□□□□ -0.49
LINC00540-202ENST00000616974 HHATLQ9HCP6 504 aa11.99□□□□□ -0.49
LINC00540-202ENST00000616974 KCNJ16Q9NPI9 418 aa11.99□□□□□ -0.49
LINC00540-202ENST00000616974 MEPEQ9NQ76 525 aaPredicted RBP11.99□□□□□ -0.49
LINC00540-202ENST00000616974 C20orf141Q9NUB4 165 aa11.99□□□□□ -0.49
LINC00540-202ENST00000616974 KLHL28Q9NXS3 571 aa11.99□□□□□ -0.49
LINC00540-202ENST00000616974 GALNT8Q9NY28 637 aa11.99□□□□□ -0.49
LINC00540-202ENST00000616974 SLC13A4Q9UKG4 626 aa11.99□□□□□ -0.49
LINC00540-202ENST00000616974 A4GNTQ9UNA3 340 aa11.99□□□□□ -0.49
LINC00540-202ENST00000616974 A0A087WUJ7 227 aa11.99□□□□□ -0.49
LINC00540-202ENST00000616974 A8MVM7 634 aa11.99□□□□□ -0.49
LINC00540-202ENST00000616974 DVL2O14641 736 aa11.99□□□□□ -0.49
LINC00540-202ENST00000616974 PIP5K1CO60331 668 aa11.99□□□□□ -0.49
LINC00540-202ENST00000616974 SYNGR4O95473 234 aa11.99□□□□□ -0.49
LINC00540-202ENST00000616974 C8BP07358 591 aa11.99□□□□□ -0.49
LINC00540-202ENST00000616974 UQCRBP14927 111 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms