RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 FANCFQ9NPI8 374 aa13.02□□□□□ -0.33
CPSF1-212ENST00000616140 ACER3Q9NUN7 267 aa13.02□□□□□ -0.33
CPSF1-212ENST00000616140 NDRG4Q9ULP0 352 aaKnown RBP13.02□□□□□ -0.33
CPSF1-212ENST00000616140 RBMS1P29558 406 aaKnown RBP13.02□□□□□ -0.33
CPSF1-212ENST00000616140 PRKAR1BP31321 381 aa13.02□□□□□ -0.33
CPSF1-212ENST00000616140 RAB5BP61020 215 aa13.02□□□□□ -0.33
CPSF1-212ENST00000616140 GK2Q14410 553 aaPredicted RBP13.02□□□□□ -0.33
CPSF1-212ENST00000616140 KRBOX4Q5JUW0 171 aa13.02□□□□□ -0.33
CPSF1-212ENST00000616140 ZNF585AQ6P3V2 769 aa13.02□□□□□ -0.33
CPSF1-212ENST00000616140 TMEM64Q6YI46 380 aa13.02□□□□□ -0.33
CPSF1-212ENST00000616140 BPIFB2Q8N4F0 458 aa13.02□□□□□ -0.33
CPSF1-212ENST00000616140 DUSP19Q8WTR2 217 aa13.02□□□□□ -0.33
CPSF1-212ENST00000616140 PDXPQ96GD0 296 aa13.02□□□□□ -0.33
CPSF1-212ENST00000616140 HCAR1Q9BXC0 346 aa13.02□□□□□ -0.33
CPSF1-212ENST00000616140 LRIT1Q9P2V4 623 aa13.02□□□□□ -0.33
CPSF1-212ENST00000616140 NUMBLQ9Y6R0 609 aa13.02□□□□□ -0.33
CPSF1-212ENST00000616140 TRPM3Q9HCF6 1732 aaPredicted RBP13.02□□□□□ -0.33
CPSF1-212ENST00000616140 DNAJB6O75190 326 aa13.02□□□□□ -0.33
CPSF1-212ENST00000616140 PEX14O75381 377 aa13.02□□□□□ -0.33
CPSF1-212ENST00000616140 CRYZL1O95825 349 aa13.02□□□□□ -0.33
CPSF1-212ENST00000616140 CD38P28907 300 aa13.02□□□□□ -0.33
CPSF1-212ENST00000616140 GP2P55259 537 aaKnown RBP13.02□□□□□ -0.33
CPSF1-212ENST00000616140 MFSD12Q6NUT3 480 aa13.02□□□□□ -0.33
CPSF1-212ENST00000616140 ADAMTSL4Q6UY14 1074 aa13.02□□□□□ -0.33
CPSF1-212ENST00000616140 COX15Q7KZN9 410 aa13.02□□□□□ -0.33
CPSF1-212ENST00000616140 ZNF511Q8NB15 262 aa13.02□□□□□ -0.33
CPSF1-212ENST00000616140 S100PBPQ96BU1 408 aa13.02□□□□□ -0.33
CPSF1-212ENST00000616140 MKRN2Q9H000 416 aaKnown RBP13.02□□□□□ -0.33
CPSF1-212ENST00000616140 SLC6A20Q9NP91 592 aa13.02□□□□□ -0.33
CPSF1-212ENST00000616140 C1GALT1Q9NS00 363 aa13.02□□□□□ -0.33
CPSF1-212ENST00000616140 UGT2A1Q9Y4X1 527 aa13.02□□□□□ -0.33
CPSF1-212ENST00000616140 KIF13AQ9H1H9 1805 aa13.01□□□□□ -0.33
CPSF1-212ENST00000616140 POM121CA8CG34 1229 aa13.01□□□□□ -0.33
CPSF1-212ENST00000616140 HBQ1P09105 142 aa13.01□□□□□ -0.33
CPSF1-212ENST00000616140 FPR3P25089 353 aa13.01□□□□□ -0.33
CPSF1-212ENST00000616140 BCL6P41182 706 aa13.01□□□□□ -0.33
CPSF1-212ENST00000616140 RAP2BP61225 183 aa13.01□□□□□ -0.33
CPSF1-212ENST00000616140 GDF7Q7Z4P5 450 aa13.01□□□□□ -0.33
CPSF1-212ENST00000616140 ZNF595Q8IYB9 648 aa13.01□□□□□ -0.33
CPSF1-212ENST00000616140 PCNPQ8WW12 178 aaKnown RBP13.01□□□□□ -0.33
CPSF1-212ENST00000616140 SGCZQ96LD1 299 aa13.01□□□□□ -0.33
CPSF1-212ENST00000616140 SLC22A7Q9Y694 548 aa13.01□□□□□ -0.33
CPSF1-212ENST00000616140 A3GALT2U3KPV4 340 aa13.01□□□□□ -0.33
CPSF1-212ENST00000616140 NUDT21O43809 227 aaKnown RBP13.01□□□□□ -0.33
CPSF1-212ENST00000616140 HLA-AP01891 365 aaKnown RBP13.01□□□□□ -0.33
CPSF1-212ENST00000616140 TACR3P29371 465 aa13.01□□□□□ -0.33
CPSF1-212ENST00000616140 HTR1FP30939 366 aa13.01□□□□□ -0.33
CPSF1-212ENST00000616140 SLC6A12P48065 614 aa13.01□□□□□ -0.33
CPSF1-212ENST00000616140 HACD4Q5VWC8 232 aa13.01□□□□□ -0.33
CPSF1-212ENST00000616140 AFMIDQ63HM1 303 aa13.01□□□□□ -0.33
CPSF1-212ENST00000616140 ZNF546Q86UE3 836 aa13.01□□□□□ -0.33
CPSF1-212ENST00000616140 CADM3Q8N126 398 aa13.01□□□□□ -0.33
CPSF1-212ENST00000616140 ACBD4Q8NC06 268 aa13.01□□□□□ -0.33
CPSF1-212ENST00000616140 NUDT22Q9BRQ3 303 aa13.01□□□□□ -0.33
CPSF1-212ENST00000616140 PBDC1Q9BVG4 233 aa13.01□□□□□ -0.33
CPSF1-212ENST00000616140 ZDHHC11BP0C7U3 371 aa13.01□□□□□ -0.33
CPSF1-212ENST00000616140 TAS2R19P59542 299 aa13.01□□□□□ -0.33
CPSF1-212ENST00000616140 RRAS2P62070 204 aaPredicted RBP13.01□□□□□ -0.33
CPSF1-212ENST00000616140 ZP2Q05996 745 aa13.01□□□□□ -0.33
CPSF1-212ENST00000616140 MMP21Q8N119 569 aa13.01□□□□□ -0.33
CPSF1-212ENST00000616140 IL17RDQ8NFM7 739 aa13.01□□□□□ -0.33
CPSF1-212ENST00000616140 OR14A2Q96R54 314 aa13.01□□□□□ -0.33
CPSF1-212ENST00000616140 ACKR4Q9NPB9 350 aa13.01□□□□□ -0.33
CPSF1-212ENST00000616140 CDK2P24941 298 aa13□□□□□ -0.33
CPSF1-212ENST00000616140 RAB38P57729 211 aa13□□□□□ -0.33
CPSF1-212ENST00000616140 SYT14P1Q58G82 188 aa13□□□□□ -0.33
CPSF1-212ENST00000616140 BEX5Q5H9J7 111 aa13□□□□□ -0.33
CPSF1-212ENST00000616140 OR5H6Q8NGV6 325 aa13□□□□□ -0.33
CPSF1-212ENST00000616140 OR51Q1Q8NH59 317 aa13□□□□□ -0.33
CPSF1-212ENST00000616140 GLYATL2Q8WU03 294 aa13□□□□□ -0.33
CPSF1-212ENST00000616140 TM9SF4Q92544 642 aa13□□□□□ -0.33
CPSF1-212ENST00000616140 SLC35B4Q969S0 331 aa13□□□□□ -0.33
CPSF1-212ENST00000616140 ZNF285Q96NJ3 590 aa13□□□□□ -0.33
CPSF1-212ENST00000616140 HINT2Q9BX68 163 aa13□□□□□ -0.33
CPSF1-212ENST00000616140 CHRDQ9H2X0 955 aa13□□□□□ -0.33
CPSF1-212ENST00000616140 FAM86C1Q9NVL1 165 aa13□□□□□ -0.33
CPSF1-212ENST00000616140 POLHQ9Y253 713 aa13□□□□□ -0.33
CPSF1-212ENST00000616140 DDX60Q8IY21 1712 aaKnown RBP13□□□□□ -0.33
CPSF1-212ENST00000616140 A0A087WUU8 490 aa13□□□□□ -0.33
CPSF1-212ENST00000616140 SERINC4A6NH21 518 aa13□□□□□ -0.33
CPSF1-212ENST00000616140 FABP7O15540 132 aa13□□□□□ -0.33
CPSF1-212ENST00000616140 UBL3O95164 117 aa13□□□□□ -0.33
CPSF1-212ENST00000616140 IGLV3-27P01718 113 aa13□□□□□ -0.33
CPSF1-212ENST00000616140 CSNK1A1P48729 337 aa13□□□□□ -0.33
CPSF1-212ENST00000616140 MEF2DQ14814 521 aa13□□□□□ -0.33
CPSF1-212ENST00000616140 NKAIN4Q8IVV8 208 aa13□□□□□ -0.33
CPSF1-212ENST00000616140 SLC2A12Q8TD20 617 aa13□□□□□ -0.33
CPSF1-212ENST00000616140 DUS3LQ96G46 650 aaKnown RBP13□□□□□ -0.33
CPSF1-212ENST00000616140 SNX18Q96RF0 628 aa13□□□□□ -0.33
CPSF1-212ENST00000616140 LYSMD1Q96S90 227 aa13□□□□□ -0.33
CPSF1-212ENST00000616140 MBOAT4Q96T53 435 aa13□□□□□ -0.33
CPSF1-212ENST00000616140 DNTTIP1Q9H147 329 aa13□□□□□ -0.33
CPSF1-212ENST00000616140 PLEKHM1Q9Y4G2 1056 aa13□□□□□ -0.33
CPSF1-212ENST00000616140 TNFRSF4P43489 277 aa13□□□□□ -0.33
CPSF1-212ENST00000616140 ZNF529Q6P280 563 aa13□□□□□ -0.33
CPSF1-212ENST00000616140 PRICKLE2Q7Z3G6 844 aa13□□□□□ -0.33
CPSF1-212ENST00000616140 GLB1L2Q8IW92 636 aa13□□□□□ -0.33
CPSF1-212ENST00000616140 OR7G1Q8NGA0 311 aa13□□□□□ -0.33
CPSF1-212ENST00000616140 PHOSPHO2Q8TCD6 241 aa13□□□□□ -0.33
CPSF1-212ENST00000616140 CUTCQ9NTM9 273 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms