RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 KLHL26Q53HC5 615 aa9.23□□□□□ -0.93
SS18-207ENST00000577636 PLAG1Q6DJT9 500 aa9.23□□□□□ -0.93
SS18-207ENST00000577636 SLC25A25Q6KCM7 469 aa9.23□□□□□ -0.93
SS18-207ENST00000577636 ZNF773Q6PK81 442 aa9.23□□□□□ -0.93
SS18-207ENST00000577636 PTCHD4Q6ZW05 846 aa9.23□□□□□ -0.93
SS18-207ENST00000577636 ZAR1Q86SH2 424 aa9.23□□□□□ -0.93
SS18-207ENST00000577636 CADM2Q8N3J6 435 aa9.23□□□□□ -0.93
SS18-207ENST00000577636 LSMEM1Q8N8F7 131 aa9.23□□□□□ -0.93
SS18-207ENST00000577636 MDS2Q8NDY4 140 aa9.23□□□□□ -0.93
SS18-207ENST00000577636 OR4C3Q8NH37 302 aa9.23□□□□□ -0.93
SS18-207ENST00000577636 NUBPLQ8TB37 319 aa9.23□□□□□ -0.93
SS18-207ENST00000577636 SLC22A8Q8TCC7 542 aa9.23□□□□□ -0.93
SS18-207ENST00000577636 PHOSPHO1Q8TCT1 267 aa9.23□□□□□ -0.93
SS18-207ENST00000577636 DNAJA4Q8WW22 397 aaPredicted RBP9.23□□□□□ -0.93
SS18-207ENST00000577636 TMEM239Q8WW34 195 aa9.23□□□□□ -0.93
SS18-207ENST00000577636 TRUB1Q8WWH5 349 aaKnown RBP9.23□□□□□ -0.93
SS18-207ENST00000577636 OSTF1Q92882 214 aa9.23□□□□□ -0.93
SS18-207ENST00000577636 TMCO6Q96DC7 493 aa9.23□□□□□ -0.93
SS18-207ENST00000577636 OMA1Q96E52 524 aa9.23□□□□□ -0.93
SS18-207ENST00000577636 FRMD6Q96NE9 622 aa9.23□□□□□ -0.93
SS18-207ENST00000577636 SLC38A2Q96QD8 506 aa9.23□□□□□ -0.93
SS18-207ENST00000577636 VKORC1Q9BQB6 163 aa9.23□□□□□ -0.93
SS18-207ENST00000577636 PRR14Q9BWN1 585 aa9.23□□□□□ -0.93
SS18-207ENST00000577636 RSPO3Q9BXY4 272 aaPredicted RBP9.23□□□□□ -0.93
SS18-207ENST00000577636 DEFB126Q9BYW3 111 aa9.23□□□□□ -0.93
SS18-207ENST00000577636 EXOSC3Q9NQT5 275 aaKnown RBP9.23□□□□□ -0.93
SS18-207ENST00000577636 RASSF1Q9NS23 344 aa9.23□□□□□ -0.93
SS18-207ENST00000577636 LRFN1Q9P244 771 aa9.23□□□□□ -0.93
SS18-207ENST00000577636 PPIEQ9UNP9 301 aaKnown RBP9.23□□□□□ -0.93
SS18-207ENST00000577636 A0A1B0GTH9 108 aa9.22□□□□□ -0.93
SS18-207ENST00000577636 A0A1W2PQD3 144 aa9.22□□□□□ -0.93
SS18-207ENST00000577636 HTR3EA5X5Y0 456 aa9.22□□□□□ -0.93
SS18-207ENST00000577636 SNTNA6NMZ2 147 aa9.22□□□□□ -0.93
SS18-207ENST00000577636 ZAR1LA6NP61 321 aa9.22□□□□□ -0.93
SS18-207ENST00000577636 SLC1A7O00341 560 aa9.22□□□□□ -0.93
SS18-207ENST00000577636 ADAM10O14672 748 aa9.22□□□□□ -0.93
SS18-207ENST00000577636 NDUFB5O43674 189 aa9.22□□□□□ -0.93
SS18-207ENST00000577636 EIF4E2O60573 245 aaKnown RBP9.22□□□□□ -0.93
SS18-207ENST00000577636 MRPS14O60783 128 aaKnown RBP9.22□□□□□ -0.93
SS18-207ENST00000577636 NGFRP08138 427 aa9.22□□□□□ -0.93
SS18-207ENST00000577636 SMIM18P0DKX4 95 aa9.22□□□□□ -0.93
SS18-207ENST00000577636 PNMTP11086 282 aa9.22□□□□□ -0.93
SS18-207ENST00000577636 PRG2P13727 222 aa9.22□□□□□ -0.93
SS18-207ENST00000577636 CHMP24386 653 aa9.22□□□□□ -0.93
SS18-207ENST00000577636 CRHBPP24387 322 aa9.22□□□□□ -0.93
SS18-207ENST00000577636 TTKP33981 857 aa9.22□□□□□ -0.93
SS18-207ENST00000577636 RFC3P40938 356 aa9.22□□□□□ -0.93
SS18-207ENST00000577636 GSSP48637 474 aa9.22□□□□□ -0.93
SS18-207ENST00000577636 RNF144AP50876 292 aaPredicted RBP9.22□□□□□ -0.93
SS18-207ENST00000577636 APOFQ13790 326 aa9.22□□□□□ -0.93
SS18-207ENST00000577636 ALG10BQ5I7T1 473 aa9.22□□□□□ -0.93
SS18-207ENST00000577636 WBP2NLQ6ICG8 309 aa9.22□□□□□ -0.93
SS18-207ENST00000577636 RPL13AP3Q6NVV1 102 aa9.22□□□□□ -0.93
SS18-207ENST00000577636 RASSF6Q6ZTQ3 369 aa9.22□□□□□ -0.93
SS18-207ENST00000577636 ZER1Q7Z7L7 766 aa9.22□□□□□ -0.93
SS18-207ENST00000577636 CD163Q86VB7 1156 aa9.22□□□□□ -0.93
SS18-207ENST00000577636 MISPQ8IVT2 679 aa9.22□□□□□ -0.93
SS18-207ENST00000577636 NKAIN4Q8IVV8 208 aa9.22□□□□□ -0.93
SS18-207ENST00000577636 NRMQ8IXM6 262 aa9.22□□□□□ -0.93
SS18-207ENST00000577636 PRR22Q8IZ63 422 aa9.22□□□□□ -0.93
SS18-207ENST00000577636 CYP4Z2PQ8N1L4 340 aa9.22□□□□□ -0.93
SS18-207ENST00000577636 SVOPQ8N4V2 548 aa9.22□□□□□ -0.93
SS18-207ENST00000577636 ZNF540Q8NDQ6 660 aa9.22□□□□□ -0.93
SS18-207ENST00000577636 OR52L1Q8NGH7 329 aa9.22□□□□□ -0.93
SS18-207ENST00000577636 ZNF563Q8TA94 476 aa9.22□□□□□ -0.93
SS18-207ENST00000577636 CNIH3Q8TBE1 160 aa9.22□□□□□ -0.93
SS18-207ENST00000577636 FBLIM1Q8WUP2 373 aa9.22□□□□□ -0.93
SS18-207ENST00000577636 TMEM255BQ8WV15 326 aa9.22□□□□□ -0.93
SS18-207ENST00000577636 IPCEF1Q8WWN9 437 aaPredicted RBP9.22□□□□□ -0.93
SS18-207ENST00000577636 MYDGFQ969H8 173 aa9.22□□□□□ -0.93
SS18-207ENST00000577636 ZNF566Q969W8 418 aa9.22□□□□□ -0.93
SS18-207ENST00000577636 SCMH1Q96GD3 660 aa9.22□□□□□ -0.93
SS18-207ENST00000577636 FAM46AQ96IP4 442 aaKnown RBP9.22□□□□□ -0.93
SS18-207ENST00000577636 PLEKHA8Q96JA3 519 aa9.22□□□□□ -0.93
SS18-207ENST00000577636 NODALQ96S42 347 aa9.22□□□□□ -0.93
SS18-207ENST00000577636 DMRTA2Q96SC8 542 aa9.22□□□□□ -0.93
SS18-207ENST00000577636 CCDC90BQ9GZT6 254 aa9.22□□□□□ -0.93
SS18-207ENST00000577636 RYDENQ9NUL5 291 aaKnown RBP9.22□□□□□ -0.93
SS18-207ENST00000577636 RNF6Q9Y252 685 aa9.22□□□□□ -0.93
SS18-207ENST00000577636 DCHS2Q6V1P9 2916 aa9.22□□□□□ -0.93
SS18-207ENST00000577636 NCOA6Q14686 2063 aaPredicted RBP9.21□□□□□ -0.93
SS18-207ENST00000577636 A0A0B4J2E0 115 aa9.21□□□□□ -0.94
SS18-207ENST00000577636 A0A1B0GWA3 101 aa9.21□□□□□ -0.94
SS18-207ENST00000577636 A0A1B0GX12 115 aa9.21□□□□□ -0.94
SS18-207ENST00000577636 SH3D21A4FU49 640 aa9.21□□□□□ -0.94
SS18-207ENST00000577636 CCDC160A6NGH7 325 aa9.21□□□□□ -0.94
SS18-207ENST00000577636 UNC119BA6NIH7 251 aa9.21□□□□□ -0.94
SS18-207ENST00000577636 OR6C70A6NIJ9 312 aa9.21□□□□□ -0.94
SS18-207ENST00000577636 PTGES3LE9PB15 166 aa9.21□□□□□ -0.94
SS18-207ENST00000577636 M0R3G1 203 aa9.21□□□□□ -0.94
SS18-207ENST00000577636 NOL3O60936 208 aaKnown RBP9.21□□□□□ -0.94
SS18-207ENST00000577636 PPM1BO75688 479 aa9.21□□□□□ -0.94
SS18-207ENST00000577636 OR6B1O95007 311 aa9.21□□□□□ -0.94
SS18-207ENST00000577636 RCBTB2O95199 551 aa9.21□□□□□ -0.94
SS18-207ENST00000577636 SOX14O95416 240 aa9.21□□□□□ -0.94
SS18-207ENST00000577636 IFI30P13284 250 aa9.21□□□□□ -0.94
SS18-207ENST00000577636 ZNF24P17028 368 aa9.21□□□□□ -0.94
SS18-207ENST00000577636 BMP7P18075 431 aa9.21□□□□□ -0.94
SS18-207ENST00000577636 HTR2AP28223 471 aa9.21□□□□□ -0.94
SS18-207ENST00000577636 ABCD3P28288 659 aa9.21□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms