RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 ADGRG3Q86Y34 549 aa9.91□□□□□ -0.82
CCDC40-207ENST00000572253 OR51L1Q8NGJ5 315 aa9.91□□□□□ -0.82
CCDC40-207ENST00000572253 OR52I2Q8NH67 350 aa9.91□□□□□ -0.82
CCDC40-207ENST00000572253 SMARCD2Q92925 531 aa9.91□□□□□ -0.82
CCDC40-207ENST00000572253 RERGQ96A58 199 aaPredicted RBP9.91□□□□□ -0.82
CCDC40-207ENST00000572253 NOX3Q9HBY0 568 aa9.91□□□□□ -0.82
CCDC40-207ENST00000572253 CD93Q9NPY3 652 aa9.91□□□□□ -0.82
CCDC40-207ENST00000572253 NANSQ9NR45 359 aa9.91□□□□□ -0.82
CCDC40-207ENST00000572253 EVA1BQ9NVM1 165 aa9.91□□□□□ -0.82
CCDC40-207ENST00000572253 NCDNQ9UBB6 729 aa9.91□□□□□ -0.82
CCDC40-207ENST00000572253 KIF25Q9UIL4 384 aa9.91□□□□□ -0.82
CCDC40-207ENST00000572253 IER3IP1Q9Y5U9 82 aa9.91□□□□□ -0.82
CCDC40-207ENST00000572253 UBE2QL1A1L167 161 aa9.91□□□□□ -0.82
CCDC40-207ENST00000572253 ZNF860A6NHJ4 632 aa9.91□□□□□ -0.82
CCDC40-207ENST00000572253 OTOL1A6NHN0 477 aaPredicted RBP9.91□□□□□ -0.82
CCDC40-207ENST00000572253 AIPO00170 330 aa9.91□□□□□ -0.82
CCDC40-207ENST00000572253 ALDOBP05062 364 aa9.91□□□□□ -0.82
CCDC40-207ENST00000572253 GIPP09681 153 aaPredicted RBP9.91□□□□□ -0.82
CCDC40-207ENST00000572253 RAB40ALP0C0E4 278 aa9.91□□□□□ -0.82
CCDC40-207ENST00000572253 FAUP35544 74 aaKnown RBP9.91□□□□□ -0.82
CCDC40-207ENST00000572253 HTRA4P83105 476 aaPredicted RBP9.91□□□□□ -0.82
CCDC40-207ENST00000572253 FAM78AQ5JUQ0 283 aa9.91□□□□□ -0.82
CCDC40-207ENST00000572253 APOOLQ6UXV4 268 aa9.91□□□□□ -0.82
CCDC40-207ENST00000572253 C3P1Q6ZMU1 363 aa9.91□□□□□ -0.82
CCDC40-207ENST00000572253 UXS1Q8NBZ7 420 aa9.91□□□□□ -0.82
CCDC40-207ENST00000572253 RAB40AQ8WXH6 277 aa9.91□□□□□ -0.82
CCDC40-207ENST00000572253 CNOT9Q92600 299 aaKnown RBP9.91□□□□□ -0.82
CCDC40-207ENST00000572253 SGTBQ96EQ0 304 aa9.91□□□□□ -0.82
CCDC40-207ENST00000572253 ELMOD3Q96FG2 381 aa9.91□□□□□ -0.82
CCDC40-207ENST00000572253 ORAI3Q9BRQ5 295 aa9.91□□□□□ -0.82
CCDC40-207ENST00000572253 FBXO34Q9NWN3 711 aa9.91□□□□□ -0.82
CCDC40-207ENST00000572253 FLVCR2Q9UPI3 526 aa9.91□□□□□ -0.82
CCDC40-207ENST00000572253 SCN3AQ9NY46 2000 aa9.91□□□□□ -0.82
CCDC40-207ENST00000572253 A0A1W2PQU0 124 aa9.9□□□□□ -0.82
CCDC40-207ENST00000572253 IFITM5A6NNB3 132 aa9.9□□□□□ -0.82
CCDC40-207ENST00000572253 MAGEB4O15481 346 aaPredicted RBP9.9□□□□□ -0.82
CCDC40-207ENST00000572253 BRINP1O60477 761 aa9.9□□□□□ -0.82
CCDC40-207ENST00000572253 KAT7O95251 611 aa9.9□□□□□ -0.82
CCDC40-207ENST00000572253 PSMB10P40306 273 aa9.9□□□□□ -0.82
CCDC40-207ENST00000572253 NDUFAF6Q330K2 333 aa9.9□□□□□ -0.82
CCDC40-207ENST00000572253 FCRLAQ7L513 359 aa9.9□□□□□ -0.82
CCDC40-207ENST00000572253 FAM220AQ7Z4H9 259 aa9.9□□□□□ -0.82
CCDC40-207ENST00000572253 LSMEM1Q8N8F7 131 aa9.9□□□□□ -0.82
CCDC40-207ENST00000572253 OR6K6Q8NGW6 343 aa9.9□□□□□ -0.82
CCDC40-207ENST00000572253 SPPL3Q8TCT6 385 aa9.9□□□□□ -0.82
CCDC40-207ENST00000572253 ZNF707Q96C28 371 aaPredicted RBP9.9□□□□□ -0.82
CCDC40-207ENST00000572253 DERL3Q96Q80 235 aa9.9□□□□□ -0.82
CCDC40-207ENST00000572253 PDCD1LG2Q9BQ51 273 aa9.9□□□□□ -0.82
CCDC40-207ENST00000572253 APOOQ9BUR5 198 aa9.9□□□□□ -0.82
CCDC40-207ENST00000572253 SLC17A9Q9BYT1 436 aa9.9□□□□□ -0.82
CCDC40-207ENST00000572253 SYNPO2LQ9H987 977 aa9.9□□□□□ -0.82
CCDC40-207ENST00000572253 MCCC2Q9HCC0 563 aa9.9□□□□□ -0.82
CCDC40-207ENST00000572253 LYRM4Q9HD34 91 aa9.9□□□□□ -0.82
CCDC40-207ENST00000572253 SERTAD3Q9UJW9 196 aa9.9□□□□□ -0.82
CCDC40-207ENST00000572253 ZNF281Q9Y2X9 895 aa9.9□□□□□ -0.82
CCDC40-207ENST00000572253 V9GY05 133 aa9.9□□□□□ -0.82
CCDC40-207ENST00000572253 NOTCH4Q99466 2003 aa9.9□□□□□ -0.82
CCDC40-207ENST00000572253 GPR75O95800 540 aa9.9□□□□□ -0.82
CCDC40-207ENST00000572253 LINC00271P0C7V0 271 aa9.9□□□□□ -0.82
CCDC40-207ENST00000572253 IFNGR1P15260 489 aa9.9□□□□□ -0.82
CCDC40-207ENST00000572253 ZP1P60852 638 aa9.9□□□□□ -0.82
CCDC40-207ENST00000572253 KIR2DS3Q14952 304 aa9.9□□□□□ -0.82
CCDC40-207ENST00000572253 SPICQ8N5J4 248 aa9.9□□□□□ -0.82
CCDC40-207ENST00000572253 OR14C36Q8NHC7 312 aa9.9□□□□□ -0.82
CCDC40-207ENST00000572253 MS4A3Q96HJ5 214 aa9.9□□□□□ -0.82
CCDC40-207ENST00000572253 SLC25A18Q9H1K4 315 aa9.9□□□□□ -0.82
CCDC40-207ENST00000572253 RSPH9Q9H1X1 276 aaPredicted RBP9.9□□□□□ -0.82
CCDC40-207ENST00000572253 PPA2Q9H2U2 334 aa9.9□□□□□ -0.82
CCDC40-207ENST00000572253 C12orf10Q9HB07 376 aa9.9□□□□□ -0.82
CCDC40-207ENST00000572253 TCF7L1Q9HCS4 588 aa9.9□□□□□ -0.82
CCDC40-207ENST00000572253 ST6GALNAC1Q9NSC7 600 aaPredicted RBP9.9□□□□□ -0.82
CCDC40-207ENST00000572253 KCNE5Q9UJ90 142 aa9.9□□□□□ -0.82
CCDC40-207ENST00000572253 HTTP42858 3142 aa9.9□□□□□ -0.82
CCDC40-207ENST00000572253 ACOT7O00154 380 aa9.9□□□□□ -0.82
CCDC40-207ENST00000572253 GMDSO60547 372 aa9.9□□□□□ -0.82
CCDC40-207ENST00000572253 LDB3O75112 727 aa9.9□□□□□ -0.82
CCDC40-207ENST00000572253 PPM1BO75688 479 aa9.9□□□□□ -0.82
CCDC40-207ENST00000572253 HIST1H1CP16403 213 aaKnown RBP9.9□□□□□ -0.82
CCDC40-207ENST00000572253 AK4P27144 223 aaPredicted RBP9.9□□□□□ -0.82
CCDC40-207ENST00000572253 DIO1P49895 249 aa9.9□□□□□ -0.82
CCDC40-207ENST00000572253 BAMBIQ13145 260 aa9.9□□□□□ -0.82
CCDC40-207ENST00000572253 FGL2Q14314 439 aa9.9□□□□□ -0.82
CCDC40-207ENST00000572253 GGTLC2Q14390 218 aa9.9□□□□□ -0.82
CCDC40-207ENST00000572253 EXOSC7Q15024 291 aaKnown RBP9.9□□□□□ -0.82
CCDC40-207ENST00000572253 FHL5Q5TD97 284 aa9.9□□□□□ -0.82
CCDC40-207ENST00000572253 ZNF550Q7Z398 422 aa9.9□□□□□ -0.82
CCDC40-207ENST00000572253 SLC51BQ86UW2 128 aa9.9□□□□□ -0.82
CCDC40-207ENST00000572253 OR11G2Q8NGC1 345 aa9.9□□□□□ -0.82
CCDC40-207ENST00000572253 OR2T4Q8NH00 348 aa9.9□□□□□ -0.82
CCDC40-207ENST00000572253 OR14A16Q8NHC5 309 aa9.9□□□□□ -0.82
CCDC40-207ENST00000572253 PTCHD1Q96NR3 888 aa9.9□□□□□ -0.82
CCDC40-207ENST00000572253 MYO9BQ13459 2157 aa9.9□□□□□ -0.83
CCDC40-207ENST00000572253 LTBP2Q14767 1821 aa9.9□□□□□ -0.83
CCDC40-207ENST00000572253 MAPK3P27361 379 aaPredicted RBP9.9□□□□□ -0.83
CCDC40-207ENST00000572253 GPR143P51810 404 aa9.9□□□□□ -0.83
CCDC40-207ENST00000572253 ART1P52961 327 aa9.9□□□□□ -0.83
CCDC40-207ENST00000572253 SLC35D3Q5M8T2 416 aa9.9□□□□□ -0.83
CCDC40-207ENST00000572253 FIGLAQ6QHK4 219 aa9.9□□□□□ -0.83
CCDC40-207ENST00000572253 RFLNBQ8N5W9 214 aa9.9□□□□□ -0.83
CCDC40-207ENST00000572253 hCG_1807616A0A1W2PRN6 198 aa9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms