RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 SAMD12Q8N8I0 201 aa10.04□□□□□ -0.8
CLK3-226ENST00000569406 OR4C6Q8NH72 309 aa10.04□□□□□ -0.8
CLK3-226ENST00000569406 SEC11CQ9BY50 192 aa10.04□□□□□ -0.8
CLK3-226ENST00000569406 SAGE1Q9NXZ1 904 aa10.04□□□□□ -0.8
CLK3-226ENST00000569406 TAS2R10Q9NYW0 307 aa10.04□□□□□ -0.8
CLK3-226ENST00000569406 DNAJC27Q9NZQ0 273 aa10.04□□□□□ -0.8
CLK3-226ENST00000569406 RPLP1P05386 114 aaKnown RBP10.03□□□□□ -0.8
CLK3-226ENST00000569406 CDKN1BP46527 198 aa10.03□□□□□ -0.8
CLK3-226ENST00000569406 TDGF1P3P51864 188 aa10.03□□□□□ -0.8
CLK3-226ENST00000569406 CDC42P60953 191 aa10.03□□□□□ -0.8
CLK3-226ENST00000569406 SORDQ00796 357 aa10.03□□□□□ -0.8
CLK3-226ENST00000569406 HMGCS1Q01581 520 aa10.03□□□□□ -0.8
CLK3-226ENST00000569406 BCL2L1Q07817 233 aa10.03□□□□□ -0.8
CLK3-226ENST00000569406 MEF2DQ14814 521 aa10.03□□□□□ -0.8
CLK3-226ENST00000569406 CPSF6Q16630 551 aaKnown RBP eCLIP10.03□□□□□ -0.8
CLK3-226ENST00000569406 ATPAF1Q5TC12 328 aaPredicted RBP10.03□□□□□ -0.8
CLK3-226ENST00000569406 GLT6D1Q7Z4J2 308 aa10.03□□□□□ -0.8
CLK3-226ENST00000569406 SPATA19Q7Z5L4 167 aa10.03□□□□□ -0.8
CLK3-226ENST00000569406 SLC44A3Q8N4M1 653 aa10.03□□□□□ -0.8
CLK3-226ENST00000569406 FAM26EQ8N5C1 309 aa10.03□□□□□ -0.8
CLK3-226ENST00000569406 CD200R1Q8TD46 325 aa10.03□□□□□ -0.8
CLK3-226ENST00000569406 CLP1Q92989 425 aaKnown RBP10.03□□□□□ -0.8
CLK3-226ENST00000569406 IGSF21Q96ID5 467 aa10.03□□□□□ -0.8
CLK3-226ENST00000569406 OR1F2PQ96R84 312 aa10.03□□□□□ -0.8
CLK3-226ENST00000569406 C20orf24Q9BUV8 137 aa10.03□□□□□ -0.8
CLK3-226ENST00000569406 EGLN1Q9GZT9 426 aa10.03□□□□□ -0.8
CLK3-226ENST00000569406 SERINC1Q9NRX5 453 aa10.03□□□□□ -0.8
CLK3-226ENST00000569406 CREBZFQ9NS37 354 aa10.03□□□□□ -0.8
CLK3-226ENST00000569406 NUMA1Q14980 2115 aa10.03□□□□□ -0.8
CLK3-226ENST00000569406 IQCF5A8MTL0 148 aa10.03□□□□□ -0.8
CLK3-226ENST00000569406 ANHXE9PGG2 379 aa10.03□□□□□ -0.8
CLK3-226ENST00000569406 F5H5T6 163 aa10.03□□□□□ -0.8
CLK3-226ENST00000569406 KERAO60938 352 aa10.03□□□□□ -0.8
CLK3-226ENST00000569406 IGHEP01854 428 aa10.03□□□□□ -0.8
CLK3-226ENST00000569406 ESR1P03372 595 aa10.03□□□□□ -0.8
CLK3-226ENST00000569406 ZNF16P17020 682 aaPredicted RBP10.03□□□□□ -0.8
CLK3-226ENST00000569406 MAPK3P27361 379 aaPredicted RBP10.03□□□□□ -0.8
CLK3-226ENST00000569406 PITPNBP48739 271 aa10.03□□□□□ -0.8
CLK3-226ENST00000569406 ZNF84P51523 738 aa10.03□□□□□ -0.8
CLK3-226ENST00000569406 LCP2Q13094 533 aa10.03□□□□□ -0.8
CLK3-226ENST00000569406 ENPP2Q13822 863 aa10.03□□□□□ -0.8
CLK3-226ENST00000569406 SLC10A1Q14973 349 aa10.03□□□□□ -0.8
CLK3-226ENST00000569406 XKR7Q5GH72 579 aa10.03□□□□□ -0.8
CLK3-226ENST00000569406 ATAT1Q5SQI0 421 aa10.03□□□□□ -0.8
CLK3-226ENST00000569406 OR10K2Q6IF99 312 aa10.03□□□□□ -0.8
CLK3-226ENST00000569406 LINGO4Q6UY18 593 aa10.03□□□□□ -0.8
CLK3-226ENST00000569406 ZNF620Q6ZNG0 422 aa10.03□□□□□ -0.8
CLK3-226ENST00000569406 OR2L3Q8NG85 312 aa10.03□□□□□ -0.8
CLK3-226ENST00000569406 C2orf15Q8WU43 125 aaKnown RBP10.03□□□□□ -0.8
CLK3-226ENST00000569406 TSSK3Q96PN8 268 aa10.03□□□□□ -0.8
CLK3-226ENST00000569406 FAM193BQ96PV7 902 aaPredicted RBP10.03□□□□□ -0.8
CLK3-226ENST00000569406 NRSN2Q9GZP1 204 aa10.03□□□□□ -0.8
CLK3-226ENST00000569406 DERL2Q9GZP9 239 aa10.03□□□□□ -0.8
CLK3-226ENST00000569406 P2RY12Q9H244 342 aa10.03□□□□□ -0.8
CLK3-226ENST00000569406 TBC1D17Q9HA65 648 aa10.03□□□□□ -0.8
CLK3-226ENST00000569406 DOK5Q9P104 306 aa10.03□□□□□ -0.8
CLK3-226ENST00000569406 KANTRA0A1W2PQU2 76 aa10.03□□□□□ -0.8
CLK3-226ENST00000569406 CDRT15L2A8MXV6 281 aa10.03□□□□□ -0.8
CLK3-226ENST00000569406 MKRN2OSH3BPM6 223 aa10.03□□□□□ -0.8
CLK3-226ENST00000569406 M0R036 132 aa10.03□□□□□ -0.8
CLK3-226ENST00000569406 PEX12O00623 359 aa10.03□□□□□ -0.8
CLK3-226ENST00000569406 AGPAT2O15120 278 aa10.03□□□□□ -0.8
CLK3-226ENST00000569406 SNAPC5O75971 98 aa10.03□□□□□ -0.8
CLK3-226ENST00000569406 IRF1P10914 325 aa10.03□□□□□ -0.8
CLK3-226ENST00000569406 CORO1AP31146 461 aaKnown RBP10.03□□□□□ -0.8
CLK3-226ENST00000569406 OR1D2P34982 312 aa10.03□□□□□ -0.8
CLK3-226ENST00000569406 GDNFP39905 211 aa10.03□□□□□ -0.8
CLK3-226ENST00000569406 FAM174BQ3ZCQ3 159 aa10.03□□□□□ -0.8
CLK3-226ENST00000569406 GFI1BQ5VTD9 330 aa10.03□□□□□ -0.8
CLK3-226ENST00000569406 TMCO2Q7Z6W1 182 aaPredicted RBP10.03□□□□□ -0.8
CLK3-226ENST00000569406 ZNF283Q8N7M2 679 aa10.03□□□□□ -0.8
CLK3-226ENST00000569406 OR8J3Q8NGG0 315 aa10.03□□□□□ -0.8
CLK3-226ENST00000569406 HAVCR2Q8TDQ0 301 aa10.03□□□□□ -0.8
CLK3-226ENST00000569406 GPR148Q8TDV2 347 aa10.03□□□□□ -0.8
CLK3-226ENST00000569406 ARL11Q969Q4 196 aa10.03□□□□□ -0.8
CLK3-226ENST00000569406 SRMSQ9H3Y6 488 aa10.03□□□□□ -0.8
CLK3-226ENST00000569406 ZFYVE1Q9HBF4 777 aa10.03□□□□□ -0.8
CLK3-226ENST00000569406 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP10.03□□□□□ -0.8
CLK3-226ENST00000569406 MYOFQ9NZM1 2061 aa10.02□□□□□ -0.8
CLK3-226ENST00000569406 PPP1R2P9O14990 202 aa10.02□□□□□ -0.81
CLK3-226ENST00000569406 ECI2O75521 394 aa10.02□□□□□ -0.81
CLK3-226ENST00000569406 RGS9O75916 674 aaPredicted RBP10.02□□□□□ -0.81
CLK3-226ENST00000569406 ARG1P05089 322 aa10.02□□□□□ -0.81
CLK3-226ENST00000569406 APLNRP35414 380 aa10.02□□□□□ -0.81
CLK3-226ENST00000569406 CD96P40200 585 aa10.02□□□□□ -0.81
CLK3-226ENST00000569406 TPGS1Q6ZTW0 290 aa10.02□□□□□ -0.81
CLK3-226ENST00000569406 ZNF664Q8N3J9 261 aa10.02□□□□□ -0.81
CLK3-226ENST00000569406 BPIFB2Q8N4F0 458 aa10.02□□□□□ -0.81
CLK3-226ENST00000569406 OR7G2Q8NG99 324 aa10.02□□□□□ -0.81
CLK3-226ENST00000569406 OR10R2Q8NGX6 335 aa10.02□□□□□ -0.81
CLK3-226ENST00000569406 BBS10Q8TAM1 723 aa10.02□□□□□ -0.81
CLK3-226ENST00000569406 ORAI1Q96D31 301 aa10.02□□□□□ -0.81
CLK3-226ENST00000569406 ABHD1Q96SE0 405 aa10.02□□□□□ -0.81
CLK3-226ENST00000569406 SMAD5Q99717 465 aaKnown RBP10.02□□□□□ -0.81
CLK3-226ENST00000569406 TMPRSS13Q9BYE2 586 aa10.02□□□□□ -0.81
CLK3-226ENST00000569406 C1orf109Q9NX04 203 aa10.02□□□□□ -0.81
CLK3-226ENST00000569406 CLEC4EQ9ULY5 219 aa10.02□□□□□ -0.81
CLK3-226ENST00000569406 C2orf92A0A1B0GVN3 265 aa10.02□□□□□ -0.81
CLK3-226ENST00000569406 TCRBV21S2A2A0A5A6 115 aa10.02□□□□□ -0.81
CLK3-226ENST00000569406 ANKRD66B4E2M5 251 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms