RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 ANKRD63C9JTQ0 380 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 PTGES3LE9PB15 166 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 PRAMEF26H0Y7S4 382 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 SMLR1H3BR10 107 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 TEX46H3BTG2 121 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 RPL36A-HNRNPH2H7BZ11 118 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 H7C417 338 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 K7ERI5 159 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 PDXKO00764 312 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 IMPA2O14732 288 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 UBDO15205 165 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 MSH4O15457 936 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 ORC5O43913 435 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 PRAMEF11O60813 436 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 SNNO75324 88 aaPredicted RBP2.98□□□□□ -1.93
VPS35-208ENST00000568612 ECI2O75521 394 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 FAM155BO75949 473 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 CLDN9O95484 217 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 FGF19O95750 216 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 CYB5R3P00387 301 aaPredicted RBP2.98□□□□□ -1.93
VPS35-208ENST00000568612 CFDP00746 253 aaPredicted RBP2.98□□□□□ -1.93
VPS35-208ENST00000568612 PIGRP01833 764 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 HLA-DQB1P01920 261 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 CLEC3BP05452 202 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 CD2P06729 351 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 C8GP07360 202 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 SRPRAP08240 638 aaKnown RBP2.98□□□□□ -1.93
VPS35-208ENST00000568612 SNRPCP09234 159 aaKnown RBP2.98□□□□□ -1.93
VPS35-208ENST00000568612 UQCRFS1P1P0C7P4 283 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 TMEM225BP0DP42 221 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 ALPPL2P10696 532 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 G6PDP11413 515 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 RCC1P18754 421 aaPredicted RBP2.98□□□□□ -1.93
VPS35-208ENST00000568612 BCKDHBP21953 392 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 HNRNPA2B1P22626 353 aaKnown RBP2.98□□□□□ -1.93
VPS35-208ENST00000568612 S100A2P29034 98 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 AKT1P31749 480 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 CEACAM8P31997 349 aaPredicted RBP2.98□□□□□ -1.93
VPS35-208ENST00000568612 GRK5P34947 590 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 MAS1LP35410 378 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 GGT2P36268 569 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 ARR3P36575 388 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 IFNGR2P38484 337 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 NAA10P41227 235 aaPredicted RBP2.98□□□□□ -1.93
VPS35-208ENST00000568612 KCNJ1P48048 391 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 NUMBP49757 651 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 KLK7P49862 253 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 EFNA3P52797 238 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 NAPAP54920 295 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 AQP5P55064 265 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 WNT4P56705 351 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 TMEM33P57088 247 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 KLF3P57682 345 aaPredicted RBP2.98□□□□□ -1.93
VPS35-208ENST00000568612 CDC42P60953 191 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 NCS1P62166 190 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 DYNLL1P63167 89 aaKnown RBP2.98□□□□□ -1.93
VPS35-208ENST00000568612 SHC2P98077 582 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 SCN1BQ07699 218 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 SIGLEC14Q08ET2 396 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 NPRL3Q12980 569 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 HNRNPA0Q13151 305 aaKnown RBP2.98□□□□□ -1.93
VPS35-208ENST00000568612 ENPP2Q13822 863 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 KLF9Q13886 244 aaPredicted RBP2.98□□□□□ -1.93
VPS35-208ENST00000568612 RCAN2Q14206 197 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 GAMTQ14353 236 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 PRPSAP1Q14558 356 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 PEA15Q15121 130 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 DECR1Q16698 335 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 ISXQ2M1V0 245 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 BSXQ3C1V8 233 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 SYTL3Q4VX76 610 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 CYBRD1Q53TN4 286 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 ZRANB3Q5FWF4 1079 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 SIRPB2Q5JXA9 342 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 FBXO47Q5MNV8 452 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 NCMAPQ5T1S8 102 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 N4BP2L1Q5TBK1 243 aaPredicted RBP2.98□□□□□ -1.93
VPS35-208ENST00000568612 PRAMEF5Q5TYX0 476 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 OTUD1Q5VV17 481 aaPredicted RBP2.98□□□□□ -1.93
VPS35-208ENST00000568612 PRAMEF8Q5VWM4 474 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 PRAMEF6Q5VXH4 476 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 PRAMEF7Q5VXH5 474 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 FAM198BQ6UWH4 519 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 CES3Q6UWW8 571 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 WDR88Q6ZMY6 472 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 DPY19L2P2Q6ZN68 376 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 ZNF620Q6ZNG0 422 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 RNF165Q6ZSG1 346 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 ASB18Q6ZVZ8 466 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 DPPA4Q7L190 304 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 GRINAQ7Z429 371 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 ABHD12BQ7Z5M8 362 aaPredicted RBP2.98□□□□□ -1.93
VPS35-208ENST00000568612 PTAR1Q7Z6K3 402 aaPredicted RBP2.98□□□□□ -1.93
VPS35-208ENST00000568612 LYG2Q86SG7 212 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 RBM23Q86U06 439 aaKnown RBP2.98□□□□□ -1.93
VPS35-208ENST00000568612 UNC93AQ86WB7 457 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 LRRC28Q86X40 367 aaPredicted RBP2.98□□□□□ -1.93
VPS35-208ENST00000568612 CACUL1Q86Y37 369 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 KMT5CQ86Y97 462 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 PTOV1Q86YD1 416 aa2.98□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms