RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 DPRXA6NFQ7 191 aa18.3■□□□□ 0.52
CLN3-219ENST00000565778 BMP2P12643 396 aa18.3■□□□□ 0.52
CLN3-219ENST00000565778 HOXB9P17482 250 aaPredicted RBP18.3■□□□□ 0.52
CLN3-219ENST00000565778 PPIBP23284 216 aaKnown RBP18.3■□□□□ 0.52
CLN3-219ENST00000565778 OTUD3Q5T2D3 398 aaPredicted RBP18.3■□□□□ 0.52
CLN3-219ENST00000565778 LRIF1Q5T3J3 769 aa18.3■□□□□ 0.52
CLN3-219ENST00000565778 PRAMEF8Q5VWM4 474 aa18.3■□□□□ 0.52
CLN3-219ENST00000565778 PRAMEF7Q5VXH5 474 aa18.3■□□□□ 0.52
CLN3-219ENST00000565778 PAQR6Q6TCH4 344 aa18.3■□□□□ 0.52
CLN3-219ENST00000565778 PRSS57Q6UWY2 283 aa18.3■□□□□ 0.52
CLN3-219ENST00000565778 CASP12Q6UXS9 341 aa18.3■□□□□ 0.52
CLN3-219ENST00000565778 YTHDF3Q7Z739 585 aaKnown RBP18.3■□□□□ 0.52
CLN3-219ENST00000565778 ATG4DQ86TL0 474 aaPredicted RBP18.3■□□□□ 0.52
CLN3-219ENST00000565778 SERPINA11Q86U17 422 aa18.3■□□□□ 0.52
CLN3-219ENST00000565778 TMEM99Q8N816 258 aa18.3■□□□□ 0.52
CLN3-219ENST00000565778 LILRB1Q8NHL6 650 aaPredicted RBP18.3■□□□□ 0.52
CLN3-219ENST00000565778 MAGEB18Q96M61 343 aa18.3■□□□□ 0.52
CLN3-219ENST00000565778 TAPBPLQ9BX59 468 aa18.3■□□□□ 0.52
CLN3-219ENST00000565778 CXorf56Q9H5V9 222 aa18.3■□□□□ 0.52
CLN3-219ENST00000565778 UPB1Q9UBR1 384 aa18.3■□□□□ 0.52
CLN3-219ENST00000565778 CHST2Q9Y4C5 530 aa18.3■□□□□ 0.52
CLN3-219ENST00000565778 LIPT2A6NK58 231 aa18.29■□□□□ 0.52
CLN3-219ENST00000565778 OR5H1A6NKK0 313 aa18.29■□□□□ 0.52
CLN3-219ENST00000565778 A8MVM7 634 aa18.29■□□□□ 0.52
CLN3-219ENST00000565778 RAD51DO75771 328 aa18.29■□□□□ 0.52
CLN3-219ENST00000565778 AKR7A3O95154 331 aa18.29■□□□□ 0.52
CLN3-219ENST00000565778 COX5AP20674 150 aa18.29■□□□□ 0.52
CLN3-219ENST00000565778 ATP4BP51164 291 aa18.29■□□□□ 0.52
CLN3-219ENST00000565778 IRX1P78414 480 aaPredicted RBP18.29■□□□□ 0.52
CLN3-219ENST00000565778 BSPH1Q075Z2 132 aa18.29■□□□□ 0.52
CLN3-219ENST00000565778 SQLEQ14534 574 aa18.29■□□□□ 0.52
CLN3-219ENST00000565778 SLC17A1Q14916 467 aa18.29■□□□□ 0.52
CLN3-219ENST00000565778 TMEM225Q6GV28 225 aa18.29■□□□□ 0.52
CLN3-219ENST00000565778 ADAM5Q6NVV9 412 aa18.29■□□□□ 0.52
CLN3-219ENST00000565778 MSRB3Q8IXL7 192 aa18.29■□□□□ 0.52
CLN3-219ENST00000565778 NFKBIDQ8NI38 313 aa18.29■□□□□ 0.52
CLN3-219ENST00000565778 Q96MF0 132 aa18.29■□□□□ 0.52
CLN3-219ENST00000565778 RABEP2Q9H5N1 569 aa18.29■□□□□ 0.52
CLN3-219ENST00000565778 SLC52A3Q9NQ40 469 aa18.29■□□□□ 0.52
CLN3-219ENST00000565778 TMEM45AQ9NWC5 275 aa18.29■□□□□ 0.52
CLN3-219ENST00000565778 VAPAQ9P0L0 249 aa18.29■□□□□ 0.52
CLN3-219ENST00000565778 NIPSNAP3AQ9UFN0 247 aaPredicted RBP18.29■□□□□ 0.52
CLN3-219ENST00000565778 LAMP3Q9UQV4 416 aa18.29■□□□□ 0.52
CLN3-219ENST00000565778 SLC9A8Q9Y2E8 581 aa18.29■□□□□ 0.52
CLN3-219ENST00000565778 FLVCR1Q9Y5Y0 555 aa18.29■□□□□ 0.52
CLN3-219ENST00000565778 EVPLLA8MZ36 301 aa18.28■□□□□ 0.52
CLN3-219ENST00000565778 FRS3O43559 492 aa18.28■□□□□ 0.52
CLN3-219ENST00000565778 INHBBP09529 407 aa18.28■□□□□ 0.52
CLN3-219ENST00000565778 ETS2P15036 469 aa18.28■□□□□ 0.52
CLN3-219ENST00000565778 PTH2RP49190 550 aa18.28■□□□□ 0.52
CLN3-219ENST00000565778 HOXC5Q00444 222 aa18.28■□□□□ 0.52
CLN3-219ENST00000565778 GCNT6Q5T4J0 391 aa18.28■□□□□ 0.52
CLN3-219ENST00000565778 REEP3Q6NUK4 255 aa18.28■□□□□ 0.52
CLN3-219ENST00000565778 SSX8Q7RTT4 187 aa18.28■□□□□ 0.52
CLN3-219ENST00000565778 BIVMQ86UB2 503 aa18.28■□□□□ 0.52
CLN3-219ENST00000565778 OR52E4Q8NGH9 312 aa18.28■□□□□ 0.52
CLN3-219ENST00000565778 NEUROG1Q92886 237 aa18.28■□□□□ 0.52
CLN3-219ENST00000565778 FBXW5Q969U6 566 aa18.28■□□□□ 0.52
CLN3-219ENST00000565778 SMR3AQ99954 134 aa18.28■□□□□ 0.52
CLN3-219ENST00000565778 GSX2Q9BZM3 304 aa18.28■□□□□ 0.52
CLN3-219ENST00000565778 ADPRHL2Q9NX46 363 aa18.28■□□□□ 0.52
CLN3-219ENST00000565778 TAS2R16Q9NYV7 291 aa18.28■□□□□ 0.52
CLN3-219ENST00000565778 RPS6KB2Q9UBS0 482 aa18.28■□□□□ 0.52
CLN3-219ENST00000565778 DSCAMO60469 2012 aa18.27■□□□□ 0.52
CLN3-219ENST00000565778 A0A1W2PP18 115 aa18.27■□□□□ 0.52
CLN3-219ENST00000565778 ARAFP10398 606 aa18.27■□□□□ 0.52
CLN3-219ENST00000565778 CDK6Q00534 326 aa18.27■□□□□ 0.52
CLN3-219ENST00000565778 ZNF672Q499Z4 452 aaPredicted RBP18.27■□□□□ 0.52
CLN3-219ENST00000565778 C1orf140Q5VVS0 124 aa18.27■□□□□ 0.52
CLN3-219ENST00000565778 OR7E24Q6IFN5 339 aa18.27■□□□□ 0.52
CLN3-219ENST00000565778 GPAT4Q86UL3 456 aa18.27■□□□□ 0.52
CLN3-219ENST00000565778 KRT73Q86Y46 540 aa18.27■□□□□ 0.52
CLN3-219ENST00000565778 OR52N5Q8NH56 324 aa18.27■□□□□ 0.52
CLN3-219ENST00000565778 SMAP2Q8WU79 429 aaPredicted RBP18.27■□□□□ 0.52
CLN3-219ENST00000565778 IGFBPL1Q8WX77 278 aa18.27■□□□□ 0.52
CLN3-219ENST00000565778 C3orf49Q96BT1 292 aa18.27■□□□□ 0.52
CLN3-219ENST00000565778 BDH2Q9BUT1 245 aa18.27■□□□□ 0.52
CLN3-219ENST00000565778 SPATA5L1Q9BVQ7 753 aa18.27■□□□□ 0.52
CLN3-219ENST00000565778 DCTN4Q9UJW0 460 aa18.27■□□□□ 0.52
CLN3-219ENST00000565778 CORO2BQ9UQ03 480 aa18.27■□□□□ 0.52
CLN3-219ENST00000565778 PRR14LQ5THK1 2151 aa18.26■□□□□ 0.51
CLN3-219ENST00000565778 TMCC2O75069 709 aa18.26■□□□□ 0.51
CLN3-219ENST00000565778 H2AFXP16104 143 aaPredicted RBP18.26■□□□□ 0.51
CLN3-219ENST00000565778 FOXG1P55316 489 aaPredicted RBP18.26■□□□□ 0.51
CLN3-219ENST00000565778 RPS4XP62701 263 aaKnown RBP18.26■□□□□ 0.51
CLN3-219ENST00000565778 C9orf135Q5VTT2 229 aa18.26■□□□□ 0.51
CLN3-219ENST00000565778 SEZ6L2Q6UXD5 910 aa18.26■□□□□ 0.51
CLN3-219ENST00000565778 AAED1Q7RTV5 226 aa18.26■□□□□ 0.51
CLN3-219ENST00000565778 C10orf111Q8N326 155 aa18.26■□□□□ 0.51
CLN3-219ENST00000565778 OR9K2Q8NGE7 335 aa18.26■□□□□ 0.51
CLN3-219ENST00000565778 SLC35B4Q969S0 331 aa18.26■□□□□ 0.51
CLN3-219ENST00000565778 MUS81Q96NY9 551 aa18.26■□□□□ 0.51
CLN3-219ENST00000565778 SF3B5Q9BWJ5 86 aaKnown RBP18.26■□□□□ 0.51
CLN3-219ENST00000565778 SLC7A10Q9NS82 523 aa18.26■□□□□ 0.51
CLN3-219ENST00000565778 MALT1Q9UDY8 824 aa18.26■□□□□ 0.51
CLN3-219ENST00000565778 TRIM33Q9UPN9 1127 aa18.26■□□□□ 0.51
CLN3-219ENST00000565778 ZNF469Q96JG9 3925 aaPredicted RBP18.26■□□□□ 0.51
CLN3-219ENST00000565778 SETD2Q9BYW2 2564 aaPredicted RBP18.26■□□□□ 0.51
CLN3-219ENST00000565778 A0A1W2PR80 420 aa18.25■□□□□ 0.51
CLN3-219ENST00000565778 AQP7P3A6NL99 342 aa18.25■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms