RNA–Protein interactions for RNA: ENST00000557884.5

USP3-205, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 958 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-205ENST00000557884 TRAPPC13A5PLN9 417 aa12.8□□□□□ -0.36
USP3-205ENST00000557884 LIPT2A6NK58 231 aa12.8□□□□□ -0.36
USP3-205ENST00000557884 ZNF814B7Z6K7 855 aa12.8□□□□□ -0.36
USP3-205ENST00000557884 C19orf84I3L1E1 186 aa12.8□□□□□ -0.36
USP3-205ENST00000557884 TNFSF13O75888 250 aa12.8□□□□□ -0.36
USP3-205ENST00000557884 LYPD3O95274 346 aa12.8□□□□□ -0.36
USP3-205ENST00000557884 AHSA1O95433 338 aa12.8□□□□□ -0.36
USP3-205ENST00000557884 FPR1P21462 350 aa12.8□□□□□ -0.36
USP3-205ENST00000557884 COL8A1P27658 744 aa12.8□□□□□ -0.36
USP3-205ENST00000557884 KIR2DL2P43627 348 aaPredicted RBP12.8□□□□□ -0.36
USP3-205ENST00000557884 YAP1P46937 504 aaKnown RBP12.8□□□□□ -0.36
USP3-205ENST00000557884 TAS2R41P59536 307 aa12.8□□□□□ -0.36
USP3-205ENST00000557884 SLC35A1P78382 337 aa12.8□□□□□ -0.36
USP3-205ENST00000557884 CBX1P83916 185 aa12.8□□□□□ -0.36
USP3-205ENST00000557884 EGR4Q05215 589 aa12.8□□□□□ -0.36
USP3-205ENST00000557884 FXNQ16595 210 aa12.8□□□□□ -0.36
USP3-205ENST00000557884 SLC25A35Q3KQZ1 300 aa12.8□□□□□ -0.36
USP3-205ENST00000557884 IFI44LQ53G44 452 aa12.8□□□□□ -0.36
USP3-205ENST00000557884 HIST2H2BCQ6DN03 193 aa12.8□□□□□ -0.36
USP3-205ENST00000557884 FAM86B1Q8N7N1 296 aa12.8□□□□□ -0.36
USP3-205ENST00000557884 STK35Q8TDR2 534 aa12.8□□□□□ -0.36
USP3-205ENST00000557884 GEMIN6Q8WXD5 167 aaKnown RBP12.8□□□□□ -0.36
USP3-205ENST00000557884 SLC38A4Q969I6 547 aa12.8□□□□□ -0.36
USP3-205ENST00000557884 ZNF775Q96BV0 537 aaPredicted RBP12.8□□□□□ -0.36
USP3-205ENST00000557884 ZHX1-C8orf76Q96EF9 292 aa12.8□□□□□ -0.36
USP3-205ENST00000557884 KTI12Q96EK9 354 aaPredicted RBP12.8□□□□□ -0.36
USP3-205ENST00000557884 SLC41A3Q96GZ6 507 aa12.8□□□□□ -0.36
USP3-205ENST00000557884 THTPAQ9BU02 230 aa12.8□□□□□ -0.36
USP3-205ENST00000557884 KLHL13Q9P2N7 655 aa12.8□□□□□ -0.36
USP3-205ENST00000557884 PLEKHB1Q9UF11 243 aaPredicted RBP12.8□□□□□ -0.36
USP3-205ENST00000557884 RPS6KA6Q9UK32 745 aa12.8□□□□□ -0.36
USP3-205ENST00000557884 SLC7A7Q9UM01 511 aa12.8□□□□□ -0.36
USP3-205ENST00000557884 TRAPPC4Q9Y296 219 aa12.8□□□□□ -0.36
USP3-205ENST00000557884 FLNBO75369 2602 aaKnown RBP12.8□□□□□ -0.36
USP3-205ENST00000557884 DOPEY2Q9Y3R5 2298 aa12.79□□□□□ -0.36
USP3-205ENST00000557884 SPTBN1Q01082 2364 aaKnown RBP12.79□□□□□ -0.36
USP3-205ENST00000557884 A0A087WUJ7 227 aa12.79□□□□□ -0.36
USP3-205ENST00000557884 GYG2O15488 501 aa12.79□□□□□ -0.36
USP3-205ENST00000557884 CHP2O43745 196 aa12.79□□□□□ -0.36
USP3-205ENST00000557884 RAMP1O60894 148 aa12.79□□□□□ -0.36
USP3-205ENST00000557884 SS18L1O75177 396 aaPredicted RBP12.79□□□□□ -0.36
USP3-205ENST00000557884 NPIPB7O75200 414 aa12.79□□□□□ -0.36
USP3-205ENST00000557884 SMNDC1O75940 238 aaKnown RBP eCLIP12.79□□□□□ -0.364e-9■■■□□ 17.4
USP3-205ENST00000557884 PRKD3O94806 890 aa12.79□□□□□ -0.36
USP3-205ENST00000557884 IL18BPO95998 194 aa12.79□□□□□ -0.36
USP3-205ENST00000557884 IFNW1P05000 195 aa12.79□□□□□ -0.36
USP3-205ENST00000557884 GPIP06744 558 aa12.79□□□□□ -0.36
USP3-205ENST00000557884 CRHP06850 196 aa12.79□□□□□ -0.36
USP3-205ENST00000557884 CBLP22681 906 aa12.79□□□□□ -0.36
USP3-205ENST00000557884 RPS5P46782 204 aaKnown RBP12.79□□□□□ -0.36
USP3-205ENST00000557884 CTBP2P56545 445 aa12.79□□□□□ -0.36
USP3-205ENST00000557884 RASGEF1BQ0VAM2 473 aa12.79□□□□□ -0.36
USP3-205ENST00000557884 PIN1Q13526 163 aaPredicted RBP12.79□□□□□ -0.36
USP3-205ENST00000557884 GUSBP1Q15486 140 aa12.79□□□□□ -0.36
USP3-205ENST00000557884 SPATS1Q496A3 300 aa12.79□□□□□ -0.36
USP3-205ENST00000557884 SWT1Q5T5J6 900 aaKnown RBP12.79□□□□□ -0.36
USP3-205ENST00000557884 GTF2IRD2BQ6EKJ0 949 aa12.79□□□□□ -0.36
USP3-205ENST00000557884 CYP2R1Q6VVX0 501 aa12.79□□□□□ -0.36
USP3-205ENST00000557884 WDR88Q6ZMY6 472 aa12.79□□□□□ -0.36
USP3-205ENST00000557884 FAM214BQ7L5A3 538 aa12.79□□□□□ -0.36
USP3-205ENST00000557884 GDF7Q7Z4P5 450 aa12.79□□□□□ -0.36
USP3-205ENST00000557884 BTLAQ7Z6A9 289 aa12.79□□□□□ -0.36
USP3-205ENST00000557884 LUZP2Q86TE4 346 aa12.79□□□□□ -0.36
USP3-205ENST00000557884 GTF2IRD2Q86UP8 949 aa12.79□□□□□ -0.36
USP3-205ENST00000557884 CCDC103Q8IW40 242 aa12.79□□□□□ -0.36
USP3-205ENST00000557884 TAAR8Q969N4 342 aa12.79□□□□□ -0.36
USP3-205ENST00000557884 SLC25A36Q96CQ1 311 aa12.79□□□□□ -0.36
USP3-205ENST00000557884 CCDC124Q96CT7 223 aaKnown RBP12.79□□□□□ -0.36
USP3-205ENST00000557884 STARD4Q96DR4 205 aa12.79□□□□□ -0.36
USP3-205ENST00000557884 GMPPAQ96IJ6 420 aaPredicted RBP12.79□□□□□ -0.36
USP3-205ENST00000557884 NSMCE2Q96MF7 247 aa12.79□□□□□ -0.36
USP3-205ENST00000557884 PTDSS2Q9BVG9 487 aa12.79□□□□□ -0.36
USP3-205ENST00000557884 TAPBPLQ9BX59 468 aa12.79□□□□□ -0.36
USP3-205ENST00000557884 AMBRA1Q9C0C7 1298 aa12.79□□□□□ -0.36
USP3-205ENST00000557884 C1orf21Q9H246 121 aa12.79□□□□□ -0.36
USP3-205ENST00000557884 GORASP2Q9H8Y8 452 aa12.79□□□□□ -0.36
USP3-205ENST00000557884 DCAF13Q9NV06 445 aaKnown RBP12.79□□□□□ -0.36
USP3-205ENST00000557884 RIMS3Q9UJD0 308 aa12.79□□□□□ -0.36
USP3-205ENST00000557884 PRPF19Q9UMS4 504 aaKnown RBP12.79□□□□□ -0.36
USP3-205ENST00000557884 EMC9Q9Y3B6 208 aa12.79□□□□□ -0.36
USP3-205ENST00000557884 TRAV36DV7A0A075B6V5 113 aa12.78□□□□□ -0.36
USP3-205ENST00000557884 J3KTA2 159 aa12.78□□□□□ -0.36
USP3-205ENST00000557884 KPNA4O00629 521 aaPredicted RBP12.78□□□□□ -0.36
USP3-205ENST00000557884 DNPH1O43598 174 aa12.78□□□□□ -0.36
USP3-205ENST00000557884 CYTIPO60759 359 aa12.78□□□□□ -0.36
USP3-205ENST00000557884 AKR7A3O95154 331 aa12.78□□□□□ -0.36
USP3-205ENST00000557884 OR5F1O95221 314 aa12.78□□□□□ -0.36
USP3-205ENST00000557884 ATP6V1B2P21281 511 aa12.78□□□□□ -0.36
USP3-205ENST00000557884 AGTR1P30556 359 aa12.78□□□□□ -0.36
USP3-205ENST00000557884 TFF3Q07654 80 aa12.78□□□□□ -0.36
USP3-205ENST00000557884 BNIP1Q12981 228 aa12.78□□□□□ -0.36
USP3-205ENST00000557884 RNPS1Q15287 305 aaKnown RBP12.78□□□□□ -0.36
USP3-205ENST00000557884 DNAL1Q4LDG9 190 aa12.78□□□□□ -0.36
USP3-205ENST00000557884 ABLIM2Q6H8Q1 611 aa12.78□□□□□ -0.36
USP3-205ENST00000557884 TUSC5Q8IXB3 177 aa12.78□□□□□ -0.36
USP3-205ENST00000557884 ARHGAP24Q8N264 748 aa12.78□□□□□ -0.36
USP3-205ENST00000557884 SLC43A2Q8N370 569 aa12.78□□□□□ -0.36
USP3-205ENST00000557884 C10orf53Q8N6V4 93 aa12.78□□□□□ -0.36
USP3-205ENST00000557884 SLC7A6OSQ96CW6 309 aaPredicted RBP12.78□□□□□ -0.36
USP3-205ENST00000557884 NAA11Q9BSU3 229 aaPredicted RBP12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms