RNA–Protein interactions for RNA: ENST00000556973.1

LINC00239-201, long intergenic non-protein coding RNA 239, humanhuman

TSL 3 BASIC

Gene LINC00239, Length 639 nt, Biotype lincRNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00239-201ENST00000556973 BAG5Q9UL15 447 aa9.52□□□□□ -0.89
LINC00239-201ENST00000556973 NBPF19A0A087WUL8 3843 aa9.51□□□□□ -0.89
LINC00239-201ENST00000556973 SPTBN1Q01082 2364 aaKnown RBP9.51□□□□□ -0.89
LINC00239-201ENST00000556973 IGKV3D-15A0A087WSY6 115 aa9.51□□□□□ -0.89
LINC00239-201ENST00000556973 A0A1B0GWA3 101 aa9.51□□□□□ -0.89
LINC00239-201ENST00000556973 LIPT2A6NK58 231 aa9.51□□□□□ -0.89
LINC00239-201ENST00000556973 TMEM229AB2RXF0 380 aa9.51□□□□□ -0.89
LINC00239-201ENST00000556973 M0R3H8 397 aa9.51□□□□□ -0.89
LINC00239-201ENST00000556973 GPR171O14626 319 aa9.51□□□□□ -0.89
LINC00239-201ENST00000556973 OR2T1O43869 369 aa9.51□□□□□ -0.89
LINC00239-201ENST00000556973 TPST2O60704 377 aa9.51□□□□□ -0.89
LINC00239-201ENST00000556973 SHOX2O60902 331 aaPredicted RBP9.51□□□□□ -0.89
LINC00239-201ENST00000556973 NPIPB7O75200 414 aa9.51□□□□□ -0.89
LINC00239-201ENST00000556973 EPXP11678 715 aa9.51□□□□□ -0.89
LINC00239-201ENST00000556973 CD247P20963 164 aa9.51□□□□□ -0.89
LINC00239-201ENST00000556973 CPOXP36551 454 aa9.51□□□□□ -0.89
LINC00239-201ENST00000556973 CRYBA2P53672 197 aa9.51□□□□□ -0.89
LINC00239-201ENST00000556973 PSME3P61289 254 aa9.51□□□□□ -0.89
LINC00239-201ENST00000556973 SELENOWP63302 87 aa9.51□□□□□ -0.89
LINC00239-201ENST00000556973 LIPEQ05469 1076 aa9.51□□□□□ -0.89
LINC00239-201ENST00000556973 FAM27E3Q08E93 113 aa9.51□□□□□ -0.89
LINC00239-201ENST00000556973 SNTB1Q13884 538 aaKnown RBP9.51□□□□□ -0.89
LINC00239-201ENST00000556973 NRF1Q16656 503 aa9.51□□□□□ -0.89
LINC00239-201ENST00000556973 SWT1Q5T5J6 900 aaKnown RBP9.51□□□□□ -0.89
LINC00239-201ENST00000556973 C1orf140Q5VVS0 124 aa9.51□□□□□ -0.89
LINC00239-201ENST00000556973 ZNF613Q6PF04 617 aa9.51□□□□□ -0.89
LINC00239-201ENST00000556973 PAQR6Q6TCH4 344 aa9.51□□□□□ -0.89
LINC00239-201ENST00000556973 NUFIP2Q7Z417 695 aaKnown RBP9.51□□□□□ -0.89
LINC00239-201ENST00000556973 OR6T1Q8NGN1 323 aa9.51□□□□□ -0.89
LINC00239-201ENST00000556973 PIGXQ8TBF5 258 aa9.51□□□□□ -0.89
LINC00239-201ENST00000556973 DNAJA3Q96EY1 480 aa9.51□□□□□ -0.89
LINC00239-201ENST00000556973 DACH2Q96NX9 599 aa9.51□□□□□ -0.89
LINC00239-201ENST00000556973 MCHR1Q99705 422 aa9.51□□□□□ -0.89
LINC00239-201ENST00000556973 WFDC6Q9BQY6 131 aa9.51□□□□□ -0.89
LINC00239-201ENST00000556973 TAPBPLQ9BX59 468 aa9.51□□□□□ -0.89
LINC00239-201ENST00000556973 C12orf49Q9H741 205 aa9.51□□□□□ -0.89
LINC00239-201ENST00000556973 TAGLN3Q9UI15 199 aa9.51□□□□□ -0.89
LINC00239-201ENST00000556973 USP22Q9UPT9 525 aa9.51□□□□□ -0.89
LINC00239-201ENST00000556973 HECTD1Q9ULT8 2610 aa9.5□□□□□ -0.89
LINC00239-201ENST00000556973 A0A087WUJ7 227 aa9.5□□□□□ -0.89
LINC00239-201ENST00000556973 C16orf97H3BN30 126 aa9.5□□□□□ -0.89
LINC00239-201ENST00000556973 NME4O00746 187 aa9.5□□□□□ -0.89
LINC00239-201ENST00000556973 GSTA4O15217 222 aa9.5□□□□□ -0.89
LINC00239-201ENST00000556973 KLK2P20151 261 aa9.5□□□□□ -0.89
LINC00239-201ENST00000556973 UGT2B10P36537 528 aa9.5□□□□□ -0.89
LINC00239-201ENST00000556973 SLC7A2P52569 658 aa9.5□□□□□ -0.89
LINC00239-201ENST00000556973 SLC16A1P53985 500 aa9.5□□□□□ -0.89
LINC00239-201ENST00000556973 CDH12P55289 794 aa9.5□□□□□ -0.89
LINC00239-201ENST00000556973 TLE4Q04727 773 aa9.5□□□□□ -0.89
LINC00239-201ENST00000556973 EGR4Q05215 589 aa9.5□□□□□ -0.89
LINC00239-201ENST00000556973 DAZAP2Q15038 168 aaPredicted RBP9.5□□□□□ -0.89
LINC00239-201ENST00000556973 OR7A5Q15622 319 aa9.5□□□□□ -0.89
LINC00239-201ENST00000556973 NPTX1Q15818 432 aa9.5□□□□□ -0.89
LINC00239-201ENST00000556973 EXOC3L2Q2M3D2 409 aa9.5□□□□□ -0.89
LINC00239-201ENST00000556973 ENTPD8Q5MY95 495 aa9.5□□□□□ -0.89
LINC00239-201ENST00000556973 OTUD3Q5T2D3 398 aaPredicted RBP9.5□□□□□ -0.89
LINC00239-201ENST00000556973 TMEM225Q6GV28 225 aa9.5□□□□□ -0.89
LINC00239-201ENST00000556973 ABLIM2Q6H8Q1 611 aa9.5□□□□□ -0.89
LINC00239-201ENST00000556973 CCDC103Q8IW40 242 aa9.5□□□□□ -0.89
LINC00239-201ENST00000556973 MFSD8Q8NHS3 518 aa9.5□□□□□ -0.89
LINC00239-201ENST00000556973 LINC01560Q8TB33 94 aa9.5□□□□□ -0.89
LINC00239-201ENST00000556973 RNF217Q8TC41 542 aa9.5□□□□□ -0.89
LINC00239-201ENST00000556973 PROX1Q92786 737 aa9.5□□□□□ -0.89
LINC00239-201ENST00000556973 ZNF300Q96RE9 604 aaPredicted RBP9.5□□□□□ -0.89
LINC00239-201ENST00000556973 SF3B5Q9BWJ5 86 aaKnown RBP9.5□□□□□ -0.89
LINC00239-201ENST00000556973 HDHD5Q9BXW7 423 aa9.5□□□□□ -0.89
LINC00239-201ENST00000556973 PCDHAC1Q9H158 963 aa9.5□□□□□ -0.89
LINC00239-201ENST00000556973 ALG2Q9H553 416 aa9.5□□□□□ -0.89
LINC00239-201ENST00000556973 MCCC2Q9HCC0 563 aa9.5□□□□□ -0.89
LINC00239-201ENST00000556973 SPAG4Q9NPE6 437 aa9.5□□□□□ -0.89
LINC00239-201ENST00000556973 CRIM1Q9NZV1 1036 aa9.5□□□□□ -0.89
LINC00239-201ENST00000556973 EMC3Q9P0I2 261 aa9.5□□□□□ -0.89
LINC00239-201ENST00000556973 ABCD2Q9UBJ2 740 aa9.5□□□□□ -0.89
LINC00239-201ENST00000556973 SLC9A8Q9Y2E8 581 aa9.5□□□□□ -0.89
LINC00239-201ENST00000556973 SH3GLB1Q9Y371 365 aa9.5□□□□□ -0.89
LINC00239-201ENST00000556973 TRAV36DV7A0A075B6V5 113 aa9.49□□□□□ -0.89
LINC00239-201ENST00000556973 A0A0B4J2E0 115 aa9.49□□□□□ -0.89
LINC00239-201ENST00000556973 A0A1B0GX12 115 aa9.49□□□□□ -0.89
LINC00239-201ENST00000556973 SH3D21A4FU49 640 aa9.49□□□□□ -0.89
LINC00239-201ENST00000556973 CPSF4LA6NMK7 179 aaKnown RBP9.49□□□□□ -0.89
LINC00239-201ENST00000556973 ZNF716A6NP11 495 aa9.49□□□□□ -0.89
LINC00239-201ENST00000556973 ZNF814B7Z6K7 855 aa9.49□□□□□ -0.89
LINC00239-201ENST00000556973 CXCR6O00574 342 aa9.49□□□□□ -0.89
LINC00239-201ENST00000556973 CASKO14936 926 aa9.49□□□□□ -0.89
LINC00239-201ENST00000556973 AKR7A3O95154 331 aa9.49□□□□□ -0.89
LINC00239-201ENST00000556973 VAMP5O95183 116 aa9.49□□□□□ -0.89
LINC00239-201ENST00000556973 GOSR1O95249 250 aa9.49□□□□□ -0.89
LINC00239-201ENST00000556973 AHSA1O95433 338 aa9.49□□□□□ -0.89
LINC00239-201ENST00000556973 CNOT4O95628 575 aaKnown RBP9.49□□□□□ -0.89
LINC00239-201ENST00000556973 RPS5P46782 204 aaKnown RBP9.49□□□□□ -0.89
LINC00239-201ENST00000556973 OR3A2P47893 321 aa9.49□□□□□ -0.89
LINC00239-201ENST00000556973 MNAT1P51948 309 aa9.49□□□□□ -0.89
LINC00239-201ENST00000556973 SLC17A1Q14916 467 aa9.49□□□□□ -0.89
LINC00239-201ENST00000556973 KRT72Q14CN4 511 aa9.49□□□□□ -0.89
LINC00239-201ENST00000556973 CYBRD1Q53TN4 286 aa9.49□□□□□ -0.89
LINC00239-201ENST00000556973 TFAP2EQ6VUC0 442 aa9.49□□□□□ -0.89
LINC00239-201ENST00000556973 LINC00114Q6XXX2 140 aa9.49□□□□□ -0.89
LINC00239-201ENST00000556973 GALNT5Q7Z7M9 940 aa9.49□□□□□ -0.89
LINC00239-201ENST00000556973 CARM1Q86X55 608 aa9.49□□□□□ -0.89
LINC00239-201ENST00000556973 RBM45Q8IUH3 476 aaKnown RBP9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms