RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, human

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-222	ENST00000541204	GARNL3	Q5VVW2	1013 aa		11.51	□□□□□ -0.57
RNF4-222	ENST00000541204	FAAH2	Q6GMR7	532 aa		11.51	□□□□□ -0.57
RNF4-222	ENST00000541204	RNF44	Q7L0R7	432 aa		11.51	□□□□□ -0.57
RNF4-222	ENST00000541204	BMP8A	Q7Z5Y6	402 aa		11.51	□□□□□ -0.57
RNF4-222	ENST00000541204	CDK20	Q8IZL9	346 aa		11.51	□□□□□ -0.57
RNF4-222	ENST00000541204	ZNF619	Q8N2I2	560 aa		11.51	□□□□□ -0.57
RNF4-222	ENST00000541204	ARL14	Q8N4G2	192 aa		11.51	□□□□□ -0.57
RNF4-222	ENST00000541204	MAP3K3	Q99759	626 aa		11.51	□□□□□ -0.57
RNF4-222	ENST00000541204	CACNG6	Q9BXT2	260 aa		11.51	□□□□□ -0.57
RNF4-222	ENST00000541204	ZNF350	Q9GZX5	532 aa		11.51	□□□□□ -0.57
RNF4-222	ENST00000541204	LMAN1L	Q9HAT1	526 aa		11.51	□□□□□ -0.57
RNF4-222	ENST00000541204	BEX1	Q9HBH7	125 aa		11.51	□□□□□ -0.57
RNF4-222	ENST00000541204	MEPE	Q9NQ76	525 aa	Predicted RBP	11.51	□□□□□ -0.57
RNF4-222	ENST00000541204	ELF5	Q9UKW6	265 aa	Predicted RBP	11.51	□□□□□ -0.57
RNF4-222	ENST00000541204		A0A1W2PPC4	97 aa		11.5	□□□□□ -0.57
RNF4-222	ENST00000541204	RIIAD1	A6NNX1	92 aa		11.5	□□□□□ -0.57
RNF4-222	ENST00000541204	MT-ND4	P03905	459 aa		11.5	□□□□□ -0.57
RNF4-222	ENST00000541204	ATP1B1	P05026	303 aa		11.5	□□□□□ -0.57
RNF4-222	ENST00000541204	ANKRD34C	P0C6C1	535 aa		11.5	□□□□□ -0.57
RNF4-222	ENST00000541204	NID1	P14543	1247 aa		11.5	□□□□□ -0.57
RNF4-222	ENST00000541204	CD53	P19397	219 aa		11.5	□□□□□ -0.57
RNF4-222	ENST00000541204	SLC2A5	P22732	501 aa		11.5	□□□□□ -0.57
RNF4-222	ENST00000541204	TAS2R43	P59537	309 aa		11.5	□□□□□ -0.57
RNF4-222	ENST00000541204	TP53I3	Q53FA7	332 aa		11.5	□□□□□ -0.57
RNF4-222	ENST00000541204	CD276	Q5ZPR3	534 aa		11.5	□□□□□ -0.57
RNF4-222	ENST00000541204	DMKN	Q6E0U4	476 aa	Predicted RBP	11.5	□□□□□ -0.57
RNF4-222	ENST00000541204	PRSS45	Q7RTY3	260 aa		11.5	□□□□□ -0.57
RNF4-222	ENST00000541204	ZNF687	Q8N1G0	1237 aa		11.5	□□□□□ -0.57
RNF4-222	ENST00000541204	ZNF680	Q8NEM1	530 aa		11.5	□□□□□ -0.57
RNF4-222	ENST00000541204	OR4C6	Q8NH72	309 aa		11.5	□□□□□ -0.57
RNF4-222	ENST00000541204	LMX1A	Q8TE12	382 aa		11.5	□□□□□ -0.57
RNF4-222	ENST00000541204	ANKRD9	Q96BM1	317 aa	Predicted RBP	11.5	□□□□□ -0.57
RNF4-222	ENST00000541204	MAP6	Q96JE9	813 aa		11.5	□□□□□ -0.57
RNF4-222	ENST00000541204	ORAI3	Q9BRQ5	295 aa		11.5	□□□□□ -0.57
RNF4-222	ENST00000541204	CSTF2T	Q9H0L4	616 aa	Known RBP eCLIP	11.5	□□□□□ -0.57
RNF4-222	ENST00000541204	BRD7	Q9NPI1	651 aa		11.5	□□□□□ -0.57
RNF4-222	ENST00000541204	SLC35A3	Q9Y2D2	325 aa		11.5	□□□□□ -0.57
RNF4-222	ENST00000541204	GNB5	O14775	395 aa		11.5	□□□□□ -0.57
RNF4-222	ENST00000541204	SLC22A5	O76082	557 aa		11.5	□□□□□ -0.57
RNF4-222	ENST00000541204	DBI	P07108	87 aa	Known RBP	11.5	□□□□□ -0.57
RNF4-222	ENST00000541204	MMP15	P51511	669 aa		11.5	□□□□□ -0.57
RNF4-222	ENST00000541204	NRG3	P56975	720 aa		11.5	□□□□□ -0.57
RNF4-222	ENST00000541204	TMPRSS11F	Q6ZWK6	438 aa		11.5	□□□□□ -0.57
RNF4-222	ENST00000541204	MCAT	Q8IVS2	390 aa	Known RBP	11.5	□□□□□ -0.57
RNF4-222	ENST00000541204	IZUMO1	Q8IYV9	350 aa		11.5	□□□□□ -0.57
RNF4-222	ENST00000541204	GIMAP1	Q8WWP7	306 aa		11.5	□□□□□ -0.57
RNF4-222	ENST00000541204	OR2M2	Q96R28	347 aa		11.5	□□□□□ -0.57
RNF4-222	ENST00000541204	CCDC86	Q9H6F5	360 aa	Known RBP	11.5	□□□□□ -0.57
RNF4-222	ENST00000541204	DIABLO	Q9NR28	239 aa		11.5	□□□□□ -0.57
RNF4-222	ENST00000541204	MED31	Q9Y3C7	131 aa		11.5	□□□□□ -0.57
RNF4-222	ENST00000541204	TRIOBP	Q9H2D6	2365 aa		11.5	□□□□□ -0.57
RNF4-222	ENST00000541204	UBL3	O95164	117 aa		11.5	□□□□□ -0.57
RNF4-222	ENST00000541204	HOXD11	P31277	338 aa	Predicted RBP	11.5	□□□□□ -0.57
RNF4-222	ENST00000541204	PGD	P52209	483 aa		11.5	□□□□□ -0.57
RNF4-222	ENST00000541204	BTG2	P78543	158 aa		11.5	□□□□□ -0.57
RNF4-222	ENST00000541204	MGAT2	Q10469	447 aa		11.5	□□□□□ -0.57
RNF4-222	ENST00000541204	UBXN2B	Q14CS0	331 aa		11.5	□□□□□ -0.57
RNF4-222	ENST00000541204	ST3GAL2	Q16842	350 aa		11.5	□□□□□ -0.57
RNF4-222	ENST00000541204	GSG1	Q2KHT4	349 aa		11.5	□□□□□ -0.57
RNF4-222	ENST00000541204	AMZ1	Q400G9	498 aa		11.5	□□□□□ -0.57
RNF4-222	ENST00000541204	TOR2A	Q5JU69	321 aa		11.5	□□□□□ -0.57
RNF4-222	ENST00000541204	HACD4	Q5VWC8	232 aa		11.5	□□□□□ -0.57
RNF4-222	ENST00000541204	LUZP2	Q86TE4	346 aa		11.5	□□□□□ -0.57
RNF4-222	ENST00000541204	C19orf47	Q8N9M1	422 aa	Known RBP	11.5	□□□□□ -0.57
RNF4-222	ENST00000541204	CDRT4	Q8N9R6	151 aa		11.5	□□□□□ -0.57
RNF4-222	ENST00000541204	THAP4	Q8WY91	577 aa		11.5	□□□□□ -0.57
RNF4-222	ENST00000541204	TTYH1	Q9H313	450 aa	Predicted RBP	11.5	□□□□□ -0.57
RNF4-222	ENST00000541204	MRPL39	Q9NYK5	338 aa	Known RBP	11.5	□□□□□ -0.57
RNF4-222	ENST00000541204	ST6GALNAC2	Q9UJ37	374 aa		11.5	□□□□□ -0.57
RNF4-222	ENST00000541204	POMT2	Q9UKY4	750 aa		11.5	□□□□□ -0.57
RNF4-222	ENST00000541204	OR5K4	A6NMS3	321 aa		11.49	□□□□□ -0.57
RNF4-222	ENST00000541204	WNT1	P04628	370 aa		11.49	□□□□□ -0.57
RNF4-222	ENST00000541204	EPX	P11678	715 aa		11.49	□□□□□ -0.57
RNF4-222	ENST00000541204	ZNF3	P17036	446 aa		11.49	□□□□□ -0.57
RNF4-222	ENST00000541204	DRD5	P21918	477 aa		11.49	□□□□□ -0.57
RNF4-222	ENST00000541204	RPS4Y1	P22090	263 aa	Known RBP	11.49	□□□□□ -0.57
RNF4-222	ENST00000541204	SSTR2	P30874	369 aa		11.49	□□□□□ -0.57
RNF4-222	ENST00000541204	CCR5	P51681	352 aa		11.49	□□□□□ -0.57
RNF4-222	ENST00000541204	PLAUR	Q03405	335 aa		11.49	□□□□□ -0.57
RNF4-222	ENST00000541204	RPL13AP3	Q6NVV1	102 aa		11.49	□□□□□ -0.57
RNF4-222	ENST00000541204	OR51L1	Q8NGJ5	315 aa		11.49	□□□□□ -0.57
RNF4-222	ENST00000541204	OR51Q1	Q8NH59	317 aa		11.49	□□□□□ -0.57
RNF4-222	ENST00000541204	PCNP	Q8WW12	178 aa	Known RBP	11.49	□□□□□ -0.57
RNF4-222	ENST00000541204	PTCHD1	Q96NR3	888 aa		11.49	□□□□□ -0.57
RNF4-222	ENST00000541204	TNFRSF13C	Q96RJ3	184 aa		11.49	□□□□□ -0.57
RNF4-222	ENST00000541204	SEMA6C	Q9H3T2	930 aa		11.49	□□□□□ -0.57
RNF4-222	ENST00000541204	AUNIP	Q9H7T9	357 aa		11.49	□□□□□ -0.57
RNF4-222	ENST00000541204	HEXA-AS1	Q9H8Q6	139 aa		11.49	□□□□□ -0.57
RNF4-222	ENST00000541204	UCKL1	Q9NWZ5	548 aa		11.49	□□□□□ -0.57
RNF4-222	ENST00000541204	DTX4	Q9Y2E6	619 aa		11.49	□□□□□ -0.57
RNF4-222	ENST00000541204	NPFFR2	Q9Y5X5	522 aa		11.49	□□□□□ -0.57
RNF4-222	ENST00000541204	TGFBR3L	H3BV60	316 aa		11.49	□□□□□ -0.57
RNF4-222	ENST00000541204	CBX7	O95931	251 aa		11.49	□□□□□ -0.57
RNF4-222	ENST00000541204	RAF1	P04049	648 aa		11.49	□□□□□ -0.57
RNF4-222	ENST00000541204	TPO	P07202	933 aa		11.49	□□□□□ -0.57
RNF4-222	ENST00000541204	H2AFB2	P0C5Z0	115 aa		11.49	□□□□□ -0.57
RNF4-222	ENST00000541204	MAOA	P21397	527 aa		11.49	□□□□□ -0.57
RNF4-222	ENST00000541204	POU6F2	P78424	691 aa	Predicted RBP	11.49	□□□□□ -0.57
RNF4-222	ENST00000541204	STX4	Q12846	297 aa		11.49	□□□□□ -0.57
RNF4-222	ENST00000541204	FGFBP1	Q14512	234 aa		11.49	□□□□□ -0.57

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