RNA–Protein interactions for RNA: ENST00000515516.1

TCOF1-215, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 661 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-215ENST00000515516 GTDC1Q4AE62 458 aa12.06□□□□□ -0.48
TCOF1-215ENST00000515516 ZNF311Q5JNZ3 666 aa12.06□□□□□ -0.48
TCOF1-215ENST00000515516 RPS26P11Q5JNZ5 115 aaPredicted RBP12.06□□□□□ -0.48
TCOF1-215ENST00000515516 OTUD3Q5T2D3 398 aaPredicted RBP12.06□□□□□ -0.48
TCOF1-215ENST00000515516 SLC2A7Q6PXP3 512 aa12.06□□□□□ -0.48
TCOF1-215ENST00000515516 TMEM108Q6UXF1 575 aa12.06□□□□□ -0.48
TCOF1-215ENST00000515516 DEPDC4Q8N2C3 294 aa12.06□□□□□ -0.48
TCOF1-215ENST00000515516 LILRB1Q8NHL6 650 aaPredicted RBP12.06□□□□□ -0.48
TCOF1-215ENST00000515516 GTF2H4Q92759 462 aa12.06□□□□□ -0.48
TCOF1-215ENST00000515516 COX4I2Q96KJ9 171 aa12.06□□□□□ -0.48
TCOF1-215ENST00000515516 ATP6V1G3Q96LB4 118 aa12.06□□□□□ -0.48
TCOF1-215ENST00000515516 CCDC28BQ9BUN5 200 aa12.06□□□□□ -0.48
TCOF1-215ENST00000515516 SPATA9Q9BWV2 254 aa12.06□□□□□ -0.48
TCOF1-215ENST00000515516 CISD1Q9NZ45 108 aaKnown RBP12.06□□□□□ -0.48
TCOF1-215ENST00000515516 MGAT4BQ9UQ53 548 aa12.06□□□□□ -0.48
TCOF1-215ENST00000515516 PCDHB14Q9Y5E9 798 aa12.06□□□□□ -0.48
TCOF1-215ENST00000515516 DSPPQ9NZW4 1301 aa12.06□□□□□ -0.48
TCOF1-215ENST00000515516 SETD2Q9BYW2 2564 aaPredicted RBP12.05□□□□□ -0.48
TCOF1-215ENST00000515516 A0A096LPI6 279 aa12.05□□□□□ -0.48
TCOF1-215ENST00000515516 ZC3H12DA2A288 527 aaKnown RBP12.05□□□□□ -0.48
TCOF1-215ENST00000515516 TRIM64A6NGJ6 449 aa12.05□□□□□ -0.48
TCOF1-215ENST00000515516 TRIM64BA6NI03 449 aa12.05□□□□□ -0.48
TCOF1-215ENST00000515516 A8MVM7 634 aa12.05□□□□□ -0.48
TCOF1-215ENST00000515516 RAMP1O60894 148 aa12.05□□□□□ -0.48
TCOF1-215ENST00000515516 HEXAP06865 529 aa12.05□□□□□ -0.48
TCOF1-215ENST00000515516 HOXB4P17483 251 aaPredicted RBP12.05□□□□□ -0.48
TCOF1-215ENST00000515516 PPIBP23284 216 aaKnown RBP12.05□□□□□ -0.48
TCOF1-215ENST00000515516 ACAA2P42765 397 aaKnown RBP12.05□□□□□ -0.48
TCOF1-215ENST00000515516 IDH3AP50213 366 aa12.05□□□□□ -0.48
TCOF1-215ENST00000515516 SLC17A1Q14916 467 aa12.05□□□□□ -0.48
TCOF1-215ENST00000515516 MAPK11Q15759 364 aa12.05□□□□□ -0.48
TCOF1-215ENST00000515516 PRAMEF8Q5VWM4 474 aa12.05□□□□□ -0.48
TCOF1-215ENST00000515516 PRAMEF7Q5VXH5 474 aa12.05□□□□□ -0.48
TCOF1-215ENST00000515516 TMEM225Q6GV28 225 aa12.05□□□□□ -0.48
TCOF1-215ENST00000515516 GPAT4Q86UL3 456 aa12.05□□□□□ -0.48
TCOF1-215ENST00000515516 CLIP4Q8N3C7 705 aa12.05□□□□□ -0.48
TCOF1-215ENST00000515516 KBTBD8Q8NFY9 601 aa12.05□□□□□ -0.48
TCOF1-215ENST00000515516 OR52N5Q8NH56 324 aa12.05□□□□□ -0.48
TCOF1-215ENST00000515516 BBS10Q8TAM1 723 aa12.05□□□□□ -0.48
TCOF1-215ENST00000515516 IGFBPL1Q8WX77 278 aa12.05□□□□□ -0.48
TCOF1-215ENST00000515516 SF3B5Q9BWJ5 86 aaKnown RBP12.05□□□□□ -0.48
TCOF1-215ENST00000515516 PAIP1Q9H074 479 aaKnown RBP12.05□□□□□ -0.48
TCOF1-215ENST00000515516 A4GALTQ9NPC4 353 aa12.05□□□□□ -0.48
TCOF1-215ENST00000515516 RPS6KB2Q9UBS0 482 aa12.05□□□□□ -0.48
TCOF1-215ENST00000515516 MALT1Q9UDY8 824 aa12.05□□□□□ -0.48
TCOF1-215ENST00000515516 POU2F3Q9UKI9 436 aa12.05□□□□□ -0.48
TCOF1-215ENST00000515516 FLVCR1Q9Y5Y0 555 aa12.05□□□□□ -0.48
TCOF1-215ENST00000515516 NUP214P35658 2090 aaPredicted RBP12.05□□□□□ -0.48
TCOF1-215ENST00000515516 ZFHX3Q15911 3703 aa12.04□□□□□ -0.48
TCOF1-215ENST00000515516 LIPT2A6NK58 231 aa12.04□□□□□ -0.48
TCOF1-215ENST00000515516 NR5A2O00482 541 aa12.04□□□□□ -0.48
TCOF1-215ENST00000515516 ABCD4O14678 606 aa12.04□□□□□ -0.48
TCOF1-215ENST00000515516 KRT33AO76009 404 aa12.04□□□□□ -0.48
TCOF1-215ENST00000515516 AKR7A3O95154 331 aa12.04□□□□□ -0.48
TCOF1-215ENST00000515516 LY6G6DO95868 133 aa12.04□□□□□ -0.48
TCOF1-215ENST00000515516 SOD3P08294 240 aa12.04□□□□□ -0.48
TCOF1-215ENST00000515516 PTAFRP25105 342 aa12.04□□□□□ -0.48
TCOF1-215ENST00000515516 GTF2E2P29084 291 aaKnown RBP12.04□□□□□ -0.48
TCOF1-215ENST00000515516 MRPL19P49406 292 aaKnown RBP12.04□□□□□ -0.48
TCOF1-215ENST00000515516 ZNF83P51522 516 aa12.04□□□□□ -0.48
TCOF1-215ENST00000515516 AQP5P55064 265 aa12.04□□□□□ -0.48
TCOF1-215ENST00000515516 CDH11P55287 796 aa12.04□□□□□ -0.48
TCOF1-215ENST00000515516 IRX1P78414 480 aaPredicted RBP12.04□□□□□ -0.48
TCOF1-215ENST00000515516 ETFDHQ16134 617 aa12.04□□□□□ -0.48
TCOF1-215ENST00000515516 AAED1Q7RTV5 226 aa12.04□□□□□ -0.48
TCOF1-215ENST00000515516 ABHD12BQ7Z5M8 362 aaPredicted RBP12.04□□□□□ -0.48
TCOF1-215ENST00000515516 ATG4DQ86TL0 474 aaPredicted RBP12.04□□□□□ -0.48
TCOF1-215ENST00000515516 KRT73Q86Y46 540 aa12.04□□□□□ -0.48
TCOF1-215ENST00000515516 CIARTQ8N365 385 aaPredicted RBP12.04□□□□□ -0.48
TCOF1-215ENST00000515516 TMEM99Q8N816 258 aa12.04□□□□□ -0.48
TCOF1-215ENST00000515516 OR9K2Q8NGE7 335 aa12.04□□□□□ -0.48
TCOF1-215ENST00000515516 OR52E4Q8NGH9 312 aa12.04□□□□□ -0.48
TCOF1-215ENST00000515516 NEUROG1Q92886 237 aa12.04□□□□□ -0.48
TCOF1-215ENST00000515516 SPDL1Q96EA4 605 aa12.04□□□□□ -0.48
TCOF1-215ENST00000515516 MUS81Q96NY9 551 aa12.04□□□□□ -0.48
TCOF1-215ENST00000515516 SPATA5L1Q9BVQ7 753 aa12.04□□□□□ -0.48
TCOF1-215ENST00000515516 TRIM2Q9C040 744 aa12.04□□□□□ -0.48
TCOF1-215ENST00000515516 PIF1Q9H611 641 aa12.04□□□□□ -0.48
TCOF1-215ENST00000515516 BCL2L10Q9HD36 194 aa12.04□□□□□ -0.48
TCOF1-215ENST00000515516 SLCO1B3Q9NPD5 702 aa12.04□□□□□ -0.48
TCOF1-215ENST00000515516 ADPRHL2Q9NX46 363 aa12.04□□□□□ -0.48
TCOF1-215ENST00000515516 CCDC167Q9P0B6 97 aa12.04□□□□□ -0.48
TCOF1-215ENST00000515516 DCTN4Q9UJW0 460 aa12.04□□□□□ -0.48
TCOF1-215ENST00000515516 AQP7P3A6NL99 342 aa12.03□□□□□ -0.48
TCOF1-215ENST00000515516 EVPLLA8MZ36 301 aa12.03□□□□□ -0.48
TCOF1-215ENST00000515516 M0R1B8 84 aa12.03□□□□□ -0.48
TCOF1-215ENST00000515516 VAMP5O95183 116 aa12.03□□□□□ -0.48
TCOF1-215ENST00000515516 AHSA1O95433 338 aa12.03□□□□□ -0.48
TCOF1-215ENST00000515516 NUDT7P0C024 238 aa12.03□□□□□ -0.48
TCOF1-215ENST00000515516 DANCRP0C864 163 aa12.03□□□□□ -0.48
TCOF1-215ENST00000515516 NTF4P34130 210 aa12.03□□□□□ -0.48
TCOF1-215ENST00000515516 BNIP2Q12982 314 aa12.03□□□□□ -0.48
TCOF1-215ENST00000515516 GABRA6Q16445 453 aa12.03□□□□□ -0.48
TCOF1-215ENST00000515516 CLEC12BQ2HXU8 276 aa12.03□□□□□ -0.48
TCOF1-215ENST00000515516 AGKQ53H12 422 aa12.03□□□□□ -0.48
TCOF1-215ENST00000515516 GCNT6Q5T4J0 391 aa12.03□□□□□ -0.48
TCOF1-215ENST00000515516 C9orf135Q5VTT2 229 aa12.03□□□□□ -0.48
TCOF1-215ENST00000515516 C1orf140Q5VVS0 124 aa12.03□□□□□ -0.48
TCOF1-215ENST00000515516 AGAP6Q5VW22 663 aa12.03□□□□□ -0.48
TCOF1-215ENST00000515516 BLOC1S3Q6QNY0 202 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms