RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 PIPP12273 146 aaPredicted RBP10.51□□□□□ -0.73
LIMCH1-217ENST00000512946 HOXA10P31260 410 aaPredicted RBP10.51□□□□□ -0.73
LIMCH1-217ENST00000512946 MEOX2P50222 304 aa10.51□□□□□ -0.73
LIMCH1-217ENST00000512946 TAS2R45P59539 299 aa10.51□□□□□ -0.73
LIMCH1-217ENST00000512946 SSBP1Q04837 148 aaKnown RBP10.51□□□□□ -0.73
LIMCH1-217ENST00000512946 ILKQ13418 452 aa10.51□□□□□ -0.73
LIMCH1-217ENST00000512946 COX19Q49B96 90 aa10.51□□□□□ -0.73
LIMCH1-217ENST00000512946 TOR2AQ5JU69 321 aa10.51□□□□□ -0.73
LIMCH1-217ENST00000512946 ANKRD16Q6P6B7 361 aa10.51□□□□□ -0.73
LIMCH1-217ENST00000512946 C14orf80Q86SX3 495 aa10.51□□□□□ -0.73
LIMCH1-217ENST00000512946 LAX1Q8IWV1 398 aa10.51□□□□□ -0.73
LIMCH1-217ENST00000512946 CRLF2Q9HC73 371 aa10.51□□□□□ -0.73
LIMCH1-217ENST00000512946 IGLV3-22A0A075B6J6 115 aa10.51□□□□□ -0.73
LIMCH1-217ENST00000512946 RFPL4AA6NLU0 287 aa10.51□□□□□ -0.73
LIMCH1-217ENST00000512946 ZNF727A8MUV8 499 aa10.51□□□□□ -0.73
LIMCH1-217ENST00000512946 RFPL4AL1F8VTS6 287 aa10.51□□□□□ -0.73
LIMCH1-217ENST00000512946 RTCAO00442 366 aaKnown RBP10.51□□□□□ -0.73
LIMCH1-217ENST00000512946 LCATP04180 440 aa10.51□□□□□ -0.73
LIMCH1-217ENST00000512946 TPOP07202 933 aa10.51□□□□□ -0.73
LIMCH1-217ENST00000512946 CTXN2P0C2S0 81 aa10.51□□□□□ -0.73
LIMCH1-217ENST00000512946 ACSM4P0C7M7 580 aa10.51□□□□□ -0.73
LIMCH1-217ENST00000512946 FCER1GP30273 86 aa10.51□□□□□ -0.73
LIMCH1-217ENST00000512946 IL2RGP31785 369 aa10.51□□□□□ -0.73
LIMCH1-217ENST00000512946 SH3BP2P78314 561 aa10.51□□□□□ -0.73
LIMCH1-217ENST00000512946 CLINT1Q14677 625 aa10.51□□□□□ -0.73
LIMCH1-217ENST00000512946 CTSL3PQ5NE16 218 aa10.51□□□□□ -0.73
LIMCH1-217ENST00000512946 RNLSQ5VYX0 342 aa10.51□□□□□ -0.73
LIMCH1-217ENST00000512946 BAP18Q8IXM2 172 aa10.51□□□□□ -0.73
LIMCH1-217ENST00000512946 ZNF485Q8NCK3 441 aa10.51□□□□□ -0.73
LIMCH1-217ENST00000512946 HUS1BQ8NHY5 278 aa10.51□□□□□ -0.73
LIMCH1-217ENST00000512946 SFT2D1Q8WV19 159 aa10.51□□□□□ -0.73
LIMCH1-217ENST00000512946 TANKQ92844 425 aa10.51□□□□□ -0.73
LIMCH1-217ENST00000512946 SUSD3Q96L08 255 aa10.51□□□□□ -0.73
LIMCH1-217ENST00000512946 TMEM59Q9BXS4 323 aa10.51□□□□□ -0.73
LIMCH1-217ENST00000512946 UBQLN3Q9H347 655 aa10.51□□□□□ -0.73
LIMCH1-217ENST00000512946 KIAA1324LA8MWY0 1029 aaPredicted RBP10.51□□□□□ -0.73
LIMCH1-217ENST00000512946 CHEK1O14757 476 aa10.51□□□□□ -0.73
LIMCH1-217ENST00000512946 NUDT21O43809 227 aaKnown RBP10.51□□□□□ -0.73
LIMCH1-217ENST00000512946 SIX6O95475 246 aa10.51□□□□□ -0.73
LIMCH1-217ENST00000512946 DDAH2O95865 285 aa10.51□□□□□ -0.73
LIMCH1-217ENST00000512946 RPS24P62847 133 aaKnown RBP10.51□□□□□ -0.73
LIMCH1-217ENST00000512946 GPR150Q8NGU9 434 aa10.51□□□□□ -0.73
LIMCH1-217ENST00000512946 C2CD4CQ8TF44 421 aa10.51□□□□□ -0.73
LIMCH1-217ENST00000512946 TVP23CQ96ET8 276 aa10.51□□□□□ -0.73
LIMCH1-217ENST00000512946 CXorf58Q96LI9 332 aa10.51□□□□□ -0.73
LIMCH1-217ENST00000512946 NSUN5Q96P11 429 aaKnown RBP10.51□□□□□ -0.73
LIMCH1-217ENST00000512946 TMEM175Q9BSA9 504 aa10.51□□□□□ -0.73
LIMCH1-217ENST00000512946 GOLGA2P5Q9HBQ8 144 aa10.51□□□□□ -0.73
LIMCH1-217ENST00000512946 INIPQ9NRY2 104 aa10.51□□□□□ -0.73
LIMCH1-217ENST00000512946 OLAHQ9NV23 265 aa10.51□□□□□ -0.73
LIMCH1-217ENST00000512946 ARHGAP23Q9P227 1491 aa10.51□□□□□ -0.73
LIMCH1-217ENST00000512946 PADI3Q9ULW8 664 aa10.51□□□□□ -0.73
LIMCH1-217ENST00000512946 IER3IP1Q9Y5U9 82 aa10.51□□□□□ -0.73
LIMCH1-217ENST00000512946 WNT10BO00744 389 aa10.5□□□□□ -0.73
LIMCH1-217ENST00000512946 GBAP04062 536 aa10.5□□□□□ -0.73
LIMCH1-217ENST00000512946 CD37P11049 281 aa10.5□□□□□ -0.73
LIMCH1-217ENST00000512946 GRPRP30550 384 aa10.5□□□□□ -0.73
LIMCH1-217ENST00000512946 REEP5Q00765 189 aa10.5□□□□□ -0.73
LIMCH1-217ENST00000512946 GPR18Q14330 331 aa10.5□□□□□ -0.73
LIMCH1-217ENST00000512946 TMPRSS9Q7Z410 1059 aa10.5□□□□□ -0.73
LIMCH1-217ENST00000512946 TECPR1Q7Z6L1 1165 aa10.5□□□□□ -0.73
LIMCH1-217ENST00000512946 ISCA2Q86U28 154 aa10.5□□□□□ -0.73
LIMCH1-217ENST00000512946 SLAIN1Q8ND83 568 aa10.5□□□□□ -0.73
LIMCH1-217ENST00000512946 OR51A4Q8NGJ6 313 aa10.5□□□□□ -0.73
LIMCH1-217ENST00000512946 UBXN10Q96LJ8 280 aa10.5□□□□□ -0.73
LIMCH1-217ENST00000512946 ZNF778Q96MU6 729 aa10.5□□□□□ -0.73
LIMCH1-217ENST00000512946 CTDSP1Q9GZU7 261 aa10.5□□□□□ -0.73
LIMCH1-217ENST00000512946 OR52D1Q9H346 318 aa10.5□□□□□ -0.73
LIMCH1-217ENST00000512946 ARL2-SNX15V9GYD0 113 aa10.5□□□□□ -0.73
LIMCH1-217ENST00000512946 MADDQ8WXG6 1647 aa10.5□□□□□ -0.73
LIMCH1-217ENST00000512946 GPR32O75388 356 aa10.5□□□□□ -0.73
LIMCH1-217ENST00000512946 PAPLNO95428 1278 aa10.5□□□□□ -0.73
LIMCH1-217ENST00000512946 ADH1BP00325 375 aa10.5□□□□□ -0.73
LIMCH1-217ENST00000512946 CT45A10P0DMU9 189 aa10.5□□□□□ -0.73
LIMCH1-217ENST00000512946 LAMP1P11279 417 aa10.5□□□□□ -0.73
LIMCH1-217ENST00000512946 CTRB1P17538 263 aa10.5□□□□□ -0.73
LIMCH1-217ENST00000512946 ANXA7P20073 488 aaKnown RBP10.5□□□□□ -0.73
LIMCH1-217ENST00000512946 TGM1P22735 817 aa10.5□□□□□ -0.73
LIMCH1-217ENST00000512946 C21orf33P30042 268 aaPredicted RBP10.5□□□□□ -0.73
LIMCH1-217ENST00000512946 OPRD1P41143 372 aa10.5□□□□□ -0.73
LIMCH1-217ENST00000512946 SIRPAP78324 504 aa10.5□□□□□ -0.73
LIMCH1-217ENST00000512946 NXNL2Q5VZ03 156 aa10.5□□□□□ -0.73
LIMCH1-217ENST00000512946 TXNRD3NBQ6F5E7 133 aa10.5□□□□□ -0.73
LIMCH1-217ENST00000512946 CTRB2Q6GPI1 263 aa10.5□□□□□ -0.73
LIMCH1-217ENST00000512946 ZNF836Q6ZNA1 936 aa10.5□□□□□ -0.73
LIMCH1-217ENST00000512946 C17orf107Q6ZR85 190 aa10.5□□□□□ -0.73
LIMCH1-217ENST00000512946 NAGSQ8N159 534 aa10.5□□□□□ -0.73
LIMCH1-217ENST00000512946 LSMEM1Q8N8F7 131 aa10.5□□□□□ -0.73
LIMCH1-217ENST00000512946 RELL2Q8NC24 303 aaPredicted RBP10.5□□□□□ -0.73
LIMCH1-217ENST00000512946 ZNRF4Q8WWF5 429 aa10.5□□□□□ -0.73
LIMCH1-217ENST00000512946 HHIPL1Q96JK4 782 aa10.5□□□□□ -0.73
LIMCH1-217ENST00000512946 RPL10LQ96L21 214 aaKnown RBP10.5□□□□□ -0.73
LIMCH1-217ENST00000512946 ESRP2Q9H6T0 727 aaKnown RBP10.5□□□□□ -0.73
LIMCH1-217ENST00000512946 GPR160Q9UJ42 338 aa10.5□□□□□ -0.73
LIMCH1-217ENST00000512946 GDF2Q9UK05 429 aaPredicted RBP10.5□□□□□ -0.73
LIMCH1-217ENST00000512946 RIPK3Q9Y572 518 aa10.5□□□□□ -0.73
LIMCH1-217ENST00000512946 A8MU76 341 aa10.5□□□□□ -0.73
LIMCH1-217ENST00000512946 OR4Q2P0C623 313 aa10.5□□□□□ -0.73
LIMCH1-217ENST00000512946 APEX1P27695 318 aaKnown RBP10.5□□□□□ -0.73
LIMCH1-217ENST00000512946 TMEM107Q6UX40 140 aa10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms