RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 ASF1BQ9NVP2 202 aa9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 LYARQ9NX58 379 aaKnown RBP9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 NPC1O15118 1278 aa9.96□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 ARPC1BO15143 372 aaKnown RBP9.96□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 HCRTR2O43614 444 aa9.96□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 PLRG1O43660 514 aaKnown RBP9.96□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 PRAMEF2O60811 474 aa9.96□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 SLC25A12O75746 678 aa9.96□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 EFEMP2O95967 443 aa9.96□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 GCGRP47871 477 aa9.96□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 ZFP36L2P47974 494 aaKnown RBP9.96□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 ENPP2Q13822 863 aa9.96□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 ARHGAP19Q14CB8 494 aa9.96□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 ALKBH2Q6NS38 261 aa9.96□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 RTL10Q7L3V2 364 aa9.96□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 RASGRP3Q8IV61 690 aa9.96□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 NR4A3Q92570 626 aa9.96□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 SLC25A46Q96AG3 418 aa9.96□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 LINC00052Q96N35 136 aa9.96□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 TEX101Q9BY14 249 aa9.96□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 NKX6-2Q9C056 277 aaPredicted RBP9.96□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 KIR3DX1Q9H7L2 352 aa9.96□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 MMP17Q9ULZ9 603 aa9.96□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 TRAV27A0A087WT01 109 aa9.96□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 ATG12O94817 140 aa9.96□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 PRSS23O95084 383 aa9.96□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 FABP1P07148 127 aa9.96□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 IL12BP29460 328 aa9.96□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 Q5BKY6 102 aa9.96□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 AVPI1Q5T686 147 aa9.96□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 LYPD4Q6UWN0 246 aa9.96□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 ZNF615Q8N8J6 731 aa9.96□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 OR10Z1Q8NGY1 313 aa9.96□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 CNOT9Q92600 299 aaKnown RBP9.96□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 ADOQ96SZ5 270 aa9.96□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 SMOC1Q9H4F8 434 aa9.96□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 EPHX3Q9H6B9 360 aa9.96□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 POLR1DQ9Y2S0 133 aa9.96□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 PCDHGA2Q9Y5H1 932 aa9.96□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 P2RX6O15547 441 aa9.96□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 CSTAP01040 98 aa9.96□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 RRASP10301 218 aa9.96□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 DRD2P14416 443 aa9.96□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 AHRP35869 848 aa9.96□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 MRPS21P82921 87 aaKnown RBP9.96□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 REEP5Q00765 189 aa9.96□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 ST3GAL3Q11203 375 aa9.96□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 TNK1Q13470 666 aa9.96□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 VEZF1Q14119 521 aa9.96□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 HYAL4Q2M3T9 481 aa9.96□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 FAM209BQ5JX69 171 aa9.96□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 LRIF1Q5T3J3 769 aa9.96□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 ZNF527Q8NB42 609 aa9.96□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 A8MVJ9 347 aa9.95□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 FGF17O60258 216 aa9.95□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 PEX14O75381 377 aa9.95□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 ZNF432O94892 652 aa9.95□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 HIST1H2ABP04908 130 aa9.95□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 GRK5P34947 590 aa9.95□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 MTNR1AP48039 350 aa9.95□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 CXCL12P48061 93 aa9.95□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 TMEM35AQ53FP2 167 aa9.95□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 GSG1LQ6UXU4 331 aa9.95□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 SLC36A4Q6YBV0 504 aa9.95□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 HIST3H2AQ7L7L0 130 aa9.95□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 CEACAM19Q7Z692 300 aa9.95□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 OR4C6Q8NH72 309 aa9.95□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 TRMT10AQ8TBZ6 339 aaKnown RBP9.95□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 SLC7A13Q8TCU3 470 aa9.95□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 HIST1H2ACQ93077 130 aa9.95□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 SAMD8Q96LT4 415 aa9.95□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 TBL1XR1Q9BZK7 514 aa9.95□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 Q9N2J8 555 aa9.95□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 TRIM36Q9NQ86 728 aa9.95□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 SLC2A4RGQ9NR83 387 aa9.95□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 PLCXD1Q9NUJ7 323 aa9.95□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 FTSJ1Q9UET6 329 aa9.95□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 ZBTB32Q9Y2Y4 487 aaPredicted RBP9.95□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 A0A0G2JMP0 313 aa9.95□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 HMGN4O00479 90 aa9.95□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 CSO75390 466 aaKnown RBP9.95□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 RGS11O94810 467 aa9.95□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 F10P00742 488 aa9.95□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 CTSBP07858 339 aa9.95□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 ARAFP10398 606 aa9.95□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 CCR6P51684 374 aa9.95□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 B2MP61769 119 aa9.95□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 RPS25P62851 125 aaKnown RBP9.95□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 RBBP4Q09028 425 aa9.95□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 BAMBIQ13145 260 aa9.95□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 MPEG1Q2M385 716 aa9.95□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 KLHL26Q53HC5 615 aa9.95□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 KIAA0895LQ68EN5 471 aa9.95□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 OR7G2Q8NG99 324 aa9.95□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 OR56B4Q8NH76 319 aa9.95□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 TM9SF4Q92544 642 aa9.95□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 LURAP1Q96LR2 239 aa9.95□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 C5orf34Q96MH7 638 aa9.95□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 TRPV4Q9HBA0 871 aa9.95□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 FAM60AQ9NP50 221 aa9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms