RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 CDCA4Q9BXL8 241 aa12.9□□□□□ -0.35
CUX1-209ENST00000487284 YIPF3Q9GZM5 350 aa12.9□□□□□ -0.35
CUX1-209ENST00000487284 ENKD1Q9H0I2 346 aa12.9□□□□□ -0.35
CUX1-209ENST00000487284 MCCC2Q9HCC0 563 aa12.9□□□□□ -0.35
CUX1-209ENST00000487284 TRAV27A0A087WT01 109 aa12.89□□□□□ -0.35
CUX1-209ENST00000487284 RRP8O43159 456 aaKnown RBP12.89□□□□□ -0.35
CUX1-209ENST00000487284 PRODHO43272 600 aa12.89□□□□□ -0.35
CUX1-209ENST00000487284 CH25HO95992 272 aa12.89□□□□□ -0.35
CUX1-209ENST00000487284 TACR3P29371 465 aa12.89□□□□□ -0.35
CUX1-209ENST00000487284 SOX3P41225 446 aa12.89□□□□□ -0.35
CUX1-209ENST00000487284 SUMO3P55854 103 aaPredicted RBP12.89□□□□□ -0.35
CUX1-209ENST00000487284 TLE3Q04726 772 aa12.89□□□□□ -0.35
CUX1-209ENST00000487284 C17orf67Q0P5P2 114 aa12.89□□□□□ -0.35
CUX1-209ENST00000487284 NTRK2Q16620 822 aa12.89□□□□□ -0.35
CUX1-209ENST00000487284 DEFB109BQ30KR1 87 aa12.89□□□□□ -0.35
CUX1-209ENST00000487284 GPR107Q5VW38 600 aa12.89□□□□□ -0.35
CUX1-209ENST00000487284 CCDC81Q6ZN84 652 aa12.89□□□□□ -0.35
CUX1-209ENST00000487284 BCDIN3DQ7Z5W3 292 aaKnown RBP12.89□□□□□ -0.35
CUX1-209ENST00000487284 ALDH16A1Q8IZ83 802 aa12.89□□□□□ -0.35
CUX1-209ENST00000487284 OR5M3Q8NGP4 307 aa12.89□□□□□ -0.35
CUX1-209ENST00000487284 C9orf43Q8TAL5 461 aaPredicted RBP12.89□□□□□ -0.35
CUX1-209ENST00000487284 GPR119Q8TDV5 335 aa12.89□□□□□ -0.35
CUX1-209ENST00000487284 DUSP19Q8WTR2 217 aa12.89□□□□□ -0.35
CUX1-209ENST00000487284 LIPHQ8WWY8 451 aa12.89□□□□□ -0.35
CUX1-209ENST00000487284 NMD3Q96D46 503 aaKnown RBP12.89□□□□□ -0.35
CUX1-209ENST00000487284 SPACA9Q96E40 222 aaPredicted RBP12.89□□□□□ -0.35
CUX1-209ENST00000487284 PLEKHA8Q96JA3 519 aa12.89□□□□□ -0.35
CUX1-209ENST00000487284 TNFRSF13CQ96RJ3 184 aa12.89□□□□□ -0.35
CUX1-209ENST00000487284 MRPS18AQ9NVS2 196 aaKnown RBP12.89□□□□□ -0.35
CUX1-209ENST00000487284 IL20RAQ9UHF4 553 aa12.89□□□□□ -0.35
CUX1-209ENST00000487284 BAIAP2Q9UQB8 552 aa12.89□□□□□ -0.35
CUX1-209ENST00000487284 GPR52Q9Y2T5 361 aa12.89□□□□□ -0.35
CUX1-209ENST00000487284 RAXQ9Y2V3 346 aa12.89□□□□□ -0.35
CUX1-209ENST00000487284 YARS2Q9Y2Z4 477 aaKnown RBP12.89□□□□□ -0.35
CUX1-209ENST00000487284 CNTRLQ7Z7A1 2325 aa12.88□□□□□ -0.35
CUX1-209ENST00000487284 MGAQ8IWI9 3026 aa12.88□□□□□ -0.35
CUX1-209ENST00000487284 A6NL46 340 aa12.88□□□□□ -0.35
CUX1-209ENST00000487284 OR7A10O76100 309 aa12.88□□□□□ -0.35
CUX1-209ENST00000487284 ADRA2AP08913 450 aa12.88□□□□□ -0.35
CUX1-209ENST00000487284 GP1BBP13224 206 aa12.88□□□□□ -0.35
CUX1-209ENST00000487284 ITPKBP27987 946 aa12.88□□□□□ -0.35
CUX1-209ENST00000487284 SLC6A6P31641 620 aa12.88□□□□□ -0.35
CUX1-209ENST00000487284 RPS4XP62701 263 aaKnown RBP12.88□□□□□ -0.35
CUX1-209ENST00000487284 EGR4Q05215 589 aa12.88□□□□□ -0.35
CUX1-209ENST00000487284 TOMM34Q15785 309 aaPredicted RBP12.88□□□□□ -0.35
CUX1-209ENST00000487284 COL28A1Q2UY09 1125 aa12.88□□□□□ -0.35
CUX1-209ENST00000487284 ZNF791Q3KP31 576 aaPredicted RBP12.88□□□□□ -0.35
CUX1-209ENST00000487284 ACER2Q5QJU3 275 aa12.88□□□□□ -0.35
CUX1-209ENST00000487284 AADACL4Q5VUY2 407 aa12.88□□□□□ -0.35
CUX1-209ENST00000487284 UNQ6494/PRO21346Q6UXR6 183 aa12.88□□□□□ -0.35
CUX1-209ENST00000487284 RTL4Q6ZR62 310 aa12.88□□□□□ -0.35
CUX1-209ENST00000487284 ANKK1Q8NFD2 765 aa12.88□□□□□ -0.35
CUX1-209ENST00000487284 OR51A7Q8NH64 312 aa12.88□□□□□ -0.35
CUX1-209ENST00000487284 FN3KQ9H479 309 aa12.88□□□□□ -0.35
CUX1-209ENST00000487284 CXorf56Q9H5V9 222 aa12.88□□□□□ -0.35
CUX1-209ENST00000487284 RYDENQ9NUL5 291 aaKnown RBP12.88□□□□□ -0.35
CUX1-209ENST00000487284 PTTG2Q9NZH5 202 aa12.88□□□□□ -0.35
CUX1-209ENST00000487284 OSGIN1Q9UJX0 560 aa12.88□□□□□ -0.35
CUX1-209ENST00000487284 PCDHGB6Q9Y5F9 930 aa12.88□□□□□ -0.35
CUX1-209ENST00000487284 COMMD3-BMI1R4GMX3 469 aa12.88□□□□□ -0.35
CUX1-209ENST00000487284 PTPRQQ9UMZ3 2332 aa12.88□□□□□ -0.35
CUX1-209ENST00000487284 IGLV3-32A0A0A0MS00 114 aa12.87□□□□□ -0.35
CUX1-209ENST00000487284 ANKUB1A6NFN9 424 aa12.87□□□□□ -0.35
CUX1-209ENST00000487284 SNTNA6NMZ2 147 aa12.87□□□□□ -0.35
CUX1-209ENST00000487284 NDUFB2O95178 105 aa12.87□□□□□ -0.35
CUX1-209ENST00000487284 NUDT14O95848 222 aa12.87□□□□□ -0.35
CUX1-209ENST00000487284 LCKP06239 509 aa12.87□□□□□ -0.35
CUX1-209ENST00000487284 GSTT1P30711 240 aa12.87□□□□□ -0.35
CUX1-209ENST00000487284 SSR4P51571 173 aa12.87□□□□□ -0.35
CUX1-209ENST00000487284 TMBIM6P55061 237 aa12.87□□□□□ -0.35
CUX1-209ENST00000487284 MLLT10P55197 1068 aa12.87□□□□□ -0.35
CUX1-209ENST00000487284 SOX8P57073 446 aa12.87□□□□□ -0.35
CUX1-209ENST00000487284 QPRTQ15274 297 aa12.87□□□□□ -0.35
CUX1-209ENST00000487284 ZNF74Q16587 644 aa12.87□□□□□ -0.35
CUX1-209ENST00000487284 ZNF468Q5VIY5 522 aaPredicted RBP12.87□□□□□ -0.35
CUX1-209ENST00000487284 RNLSQ5VYX0 342 aa12.87□□□□□ -0.35
CUX1-209ENST00000487284 B3GNT6Q6ZMB0 384 aa12.87□□□□□ -0.35
CUX1-209ENST00000487284 ASB15Q8WXK1 588 aa12.87□□□□□ -0.35
CUX1-209ENST00000487284 RFKQ969G6 155 aa12.87□□□□□ -0.35
CUX1-209ENST00000487284 IFT27Q9BW83 186 aa12.87□□□□□ -0.35
CUX1-209ENST00000487284 CMC2Q9NRP2 79 aa12.87□□□□□ -0.35
CUX1-209ENST00000487284 TAS2R10Q9NYW0 307 aa12.87□□□□□ -0.35
CUX1-209ENST00000487284 ZNF337Q9Y3M9 751 aa12.87□□□□□ -0.35
CUX1-209ENST00000487284 LRRN3E7EW58 273 aa12.86□□□□□ -0.35
CUX1-209ENST00000487284 GMFGO60234 142 aa12.86□□□□□ -0.35
CUX1-209ENST00000487284 TRMUO75648 421 aaKnown RBP12.86□□□□□ -0.35
CUX1-209ENST00000487284 SLC2A10O95528 541 aa12.86□□□□□ -0.35
CUX1-209ENST00000487284 ADORA3P0DMS8 318 aa12.86□□□□□ -0.35
CUX1-209ENST00000487284 PTGDSP41222 190 aa12.86□□□□□ -0.35
CUX1-209ENST00000487284 POLR2HP52434 150 aaKnown RBP12.86□□□□□ -0.35
CUX1-209ENST00000487284 DLX5P56178 289 aa12.86□□□□□ -0.35
CUX1-209ENST00000487284 FOXK2Q01167 660 aa12.86□□□□□ -0.35
CUX1-209ENST00000487284 NXNL2Q5VZ03 156 aa12.86□□□□□ -0.35
CUX1-209ENST00000487284 OPN5Q6U736 354 aa12.86□□□□□ -0.35
CUX1-209ENST00000487284 IL20RBQ6UXL0 311 aa12.86□□□□□ -0.35
CUX1-209ENST00000487284 GRINAQ7Z429 371 aa12.86□□□□□ -0.35
CUX1-209ENST00000487284 BEST3Q8N1M1 668 aa12.86□□□□□ -0.35
CUX1-209ENST00000487284 TMEM156Q8N614 296 aa12.86□□□□□ -0.35
CUX1-209ENST00000487284 LRRC17Q8N6Y2 441 aa12.86□□□□□ -0.35
CUX1-209ENST00000487284 OR10G3Q8NGC4 313 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms