RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 PRKAR1BP31321 381 aa15.3■□□□□ 0.04
COL7A1-210ENST00000487017 CSNK1A1P48729 337 aa15.3■□□□□ 0.04
COL7A1-210ENST00000487017 EMP2P54851 167 aa15.3■□□□□ 0.04
COL7A1-210ENST00000487017 NDUFAF7Q7L592 441 aa15.3■□□□□ 0.04
COL7A1-210ENST00000487017 SULF2Q8IWU5 870 aa15.3■□□□□ 0.04
COL7A1-210ENST00000487017 OR5H6Q8NGV6 325 aa15.3■□□□□ 0.04
COL7A1-210ENST00000487017 OR1S1Q8NH92 325 aa15.3■□□□□ 0.04
COL7A1-210ENST00000487017 OLIG1Q8TAK6 271 aa15.3■□□□□ 0.04
COL7A1-210ENST00000487017 SMAP2Q8WU79 429 aaPredicted RBP15.3■□□□□ 0.04
COL7A1-210ENST00000487017 KCNJ16Q9NPI9 418 aa15.3■□□□□ 0.04
COL7A1-210ENST00000487017 HAO2Q9NYQ3 351 aa15.3■□□□□ 0.04
COL7A1-210ENST00000487017 PLEK2Q9NYT0 353 aa15.3■□□□□ 0.04
COL7A1-210ENST00000487017 ZNF136P52737 540 aa15.3■□□□□ 0.04
COL7A1-210ENST00000487017 SNRPGP62308 76 aaKnown RBP15.3■□□□□ 0.04
COL7A1-210ENST00000487017 LCN10Q6JVE6 187 aa15.3■□□□□ 0.04
COL7A1-210ENST00000487017 B3GLCTQ6Y288 498 aa15.3■□□□□ 0.04
COL7A1-210ENST00000487017 AMDHD1Q96NU7 426 aa15.3■□□□□ 0.04
COL7A1-210ENST00000487017 TNFRSF13CQ96RJ3 184 aa15.3■□□□□ 0.04
COL7A1-210ENST00000487017 HCAR1Q9BXC0 346 aa15.3■□□□□ 0.04
COL7A1-210ENST00000487017 CHRDQ9H2X0 955 aa15.3■□□□□ 0.04
COL7A1-210ENST00000487017 GLIPR2Q9H4G4 154 aa15.3■□□□□ 0.04
COL7A1-210ENST00000487017 VSX1Q9NZR4 365 aaPredicted RBP15.3■□□□□ 0.04
COL7A1-210ENST00000487017 DYRK1AQ13627 763 aa15.29■□□□□ 0.04
COL7A1-210ENST00000487017 SLC22A6Q4U2R8 563 aa15.29■□□□□ 0.04
COL7A1-210ENST00000487017 FAM26DQ5JW98 314 aa15.29■□□□□ 0.04
COL7A1-210ENST00000487017 FAM71E1Q6IPT2 247 aa15.29■□□□□ 0.04
COL7A1-210ENST00000487017 ZNF740Q8NDX6 193 aa15.29■□□□□ 0.04
COL7A1-210ENST00000487017 ARRDC3Q96B67 414 aa15.29■□□□□ 0.04
COL7A1-210ENST00000487017 OR51B6Q9H340 312 aa15.29■□□□□ 0.04
COL7A1-210ENST00000487017 EPHX3Q9H6B9 360 aa15.29■□□□□ 0.04
COL7A1-210ENST00000487017 MDFIC2A0A1B0GVS7 189 aa15.29■□□□□ 0.04
COL7A1-210ENST00000487017 TMEM212A6NML5 194 aa15.29■□□□□ 0.04
COL7A1-210ENST00000487017 F11P03951 625 aa15.29■□□□□ 0.04
COL7A1-210ENST00000487017 IFNA4P05014 189 aa15.29■□□□□ 0.04
COL7A1-210ENST00000487017 PPP3CBP16298 524 aa15.29■□□□□ 0.04
COL7A1-210ENST00000487017 TM9SF4Q92544 642 aa15.29■□□□□ 0.04
COL7A1-210ENST00000487017 DUS3LQ96G46 650 aaKnown RBP15.29■□□□□ 0.04
COL7A1-210ENST00000487017 KATNB1Q9BVA0 655 aa15.29■□□□□ 0.04
COL7A1-210ENST00000487017 SIDT1Q9NXL6 827 aaKnown RBP15.29■□□□□ 0.04
COL7A1-210ENST00000487017 TRDV1A0A1B0GX56 115 aa15.29■□□□□ 0.04
COL7A1-210ENST00000487017 FAM230AA0A1W2PPH8 454 aa15.29■□□□□ 0.04
COL7A1-210ENST00000487017 IFNA10P01566 189 aa15.29■□□□□ 0.04
COL7A1-210ENST00000487017 ALDH3B1P43353 468 aa15.29■□□□□ 0.04
COL7A1-210ENST00000487017 DCAF7P61962 342 aa15.29■□□□□ 0.04
COL7A1-210ENST00000487017 MEX3BQ6ZN04 569 aaKnown RBP15.29■□□□□ 0.04
COL7A1-210ENST00000487017 BCDIN3DQ7Z5W3 292 aaKnown RBP15.29■□□□□ 0.04
COL7A1-210ENST00000487017 LINC01465Q8N7H1 131 aa15.29■□□□□ 0.04
COL7A1-210ENST00000487017 OR4D6Q8NGJ1 314 aa15.29■□□□□ 0.04
COL7A1-210ENST00000487017 TXNDC15Q96J42 360 aa15.29■□□□□ 0.04
COL7A1-210ENST00000487017 MBOAT4Q96T53 435 aa15.29■□□□□ 0.04
COL7A1-210ENST00000487017 MARCH5Q9NX47 278 aa15.29■□□□□ 0.04
COL7A1-210ENST00000487017 DNMT3BQ9UBC3 853 aaKnown RBP15.29■□□□□ 0.04
COL7A1-210ENST00000487017 SRPK3Q9UPE1 567 aa15.29■□□□□ 0.04
COL7A1-210ENST00000487017 KDM4EB2RXH2 506 aaPredicted RBP15.29■□□□□ 0.04
COL7A1-210ENST00000487017 NUPL2O15504 423 aaKnown RBP15.29■□□□□ 0.04
COL7A1-210ENST00000487017 ZNF254O75437 659 aa15.29■□□□□ 0.04
COL7A1-210ENST00000487017 FPR3P25089 353 aa15.29■□□□□ 0.04
COL7A1-210ENST00000487017 MELKQ14680 651 aa15.29■□□□□ 0.04
COL7A1-210ENST00000487017 ZNF595Q8IYB9 648 aa15.29■□□□□ 0.04
COL7A1-210ENST00000487017 ANKRD19PQ9H560 264 aa15.29■□□□□ 0.04
COL7A1-210ENST00000487017 A0A0D9SG52 128 aa15.28■□□□□ 0.04
COL7A1-210ENST00000487017 ZNF195O14628 629 aa15.28■□□□□ 0.04
COL7A1-210ENST00000487017 FABP7O15540 132 aa15.28■□□□□ 0.04
COL7A1-210ENST00000487017 SNAPINO95295 136 aa15.28■□□□□ 0.04
COL7A1-210ENST00000487017 VASPP50552 380 aaPredicted RBP15.28■□□□□ 0.04
COL7A1-210ENST00000487017 RFPL4BQ6ZWI9 263 aa15.28■□□□□ 0.04
COL7A1-210ENST00000487017 MRPL21Q7Z2W9 205 aaKnown RBP15.28■□□□□ 0.04
COL7A1-210ENST00000487017 TECPR1Q7Z6L1 1165 aa15.28■□□□□ 0.04
COL7A1-210ENST00000487017 RNF128Q8TEB7 428 aa15.28■□□□□ 0.04
COL7A1-210ENST00000487017 ALG12Q9BV10 488 aa15.28■□□□□ 0.04
COL7A1-210ENST00000487017 COPS3Q9UNS2 423 aa15.28■□□□□ 0.04
COL7A1-210ENST00000487017 UGT2A1Q9Y4X1 527 aa15.28■□□□□ 0.04
COL7A1-210ENST00000487017 SOCS6O14544 535 aa15.28■□□□□ 0.04
COL7A1-210ENST00000487017 ZNF264O43296 627 aa15.28■□□□□ 0.04
COL7A1-210ENST00000487017 SERPINE2P07093 398 aa15.28■□□□□ 0.04
COL7A1-210ENST00000487017 FOXK2Q01167 660 aa15.28■□□□□ 0.04
COL7A1-210ENST00000487017 C18orf63Q68DL7 685 aa15.28■□□□□ 0.04
COL7A1-210ENST00000487017 DUSP19Q8WTR2 217 aa15.28■□□□□ 0.04
COL7A1-210ENST00000487017 SNX18Q96RF0 628 aa15.28■□□□□ 0.04
COL7A1-210ENST00000487017 PPT2Q9UMR5 302 aa15.28■□□□□ 0.04
COL7A1-210ENST00000487017 TMEM82A0PJX8 343 aa15.28■□□□□ 0.04
COL7A1-210ENST00000487017 ACVR1Q04771 509 aa15.28■□□□□ 0.04
COL7A1-210ENST00000487017 LTB4RQ15722 352 aa15.28■□□□□ 0.04
COL7A1-210ENST00000487017 DUSP7Q16829 419 aa15.28■□□□□ 0.04
COL7A1-210ENST00000487017 ZNF674Q2M3X9 581 aa15.28■□□□□ 0.04
COL7A1-210ENST00000487017 FAM160A2Q8N612 972 aaPredicted RBP15.28■□□□□ 0.04
COL7A1-210ENST00000487017 ESX1Q8N693 406 aa15.28■□□□□ 0.04
COL7A1-210ENST00000487017 ZFAND1Q8TCF1 268 aa15.28■□□□□ 0.04
COL7A1-210ENST00000487017 TNFRSF10AO00220 468 aa15.28■□□□□ 0.04
COL7A1-210ENST00000487017 NUDT21O43809 227 aaKnown RBP15.28■□□□□ 0.04
COL7A1-210ENST00000487017 LILRB5O75023 590 aa15.28■□□□□ 0.04
COL7A1-210ENST00000487017 ADAM23O75077 832 aa15.28■□□□□ 0.04
COL7A1-210ENST00000487017 CLEC2LP0C7M8 214 aa15.28■□□□□ 0.04
COL7A1-210ENST00000487017 CHATP28329 748 aa15.28■□□□□ 0.04
COL7A1-210ENST00000487017 NUDT1P36639 197 aa15.28■□□□□ 0.04
COL7A1-210ENST00000487017 CX3CR1P49238 355 aa15.28■□□□□ 0.04
COL7A1-210ENST00000487017 OPCMLQ14982 345 aa15.28■□□□□ 0.04
COL7A1-210ENST00000487017 GDF7Q7Z4P5 450 aa15.28■□□□□ 0.04
COL7A1-210ENST00000487017 TMEM255BQ8WV15 326 aa15.28■□□□□ 0.04
COL7A1-210ENST00000487017 SFXN2Q96NB2 322 aa15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms