RNA–Protein interactions for RNA: ENST00000481999.1

CHD3-211, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 2,515 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-211ENST00000481999 MMP28Q9H239 520 aa13.22□□□□□ -0.29
CHD3-211ENST00000481999 WDR70Q9NW82 654 aa13.22□□□□□ -0.29
CHD3-211ENST00000481999 ASB6Q9NWX5 421 aa13.22□□□□□ -0.29
CHD3-211ENST00000481999 OCIAD1Q9NX40 245 aa13.22□□□□□ -0.29
CHD3-211ENST00000481999 COMMD3Q9UBI1 195 aa13.22□□□□□ -0.29
CHD3-211ENST00000481999 TNFRSF10DQ9UBN6 386 aa13.22□□□□□ -0.29
CHD3-211ENST00000481999 POLHQ9Y253 713 aa13.22□□□□□ -0.29
CHD3-211ENST00000481999 C4orf47A7E2U8 309 aa13.22□□□□□ -0.29
CHD3-211ENST00000481999 CFL1P23528 166 aaKnown RBP13.22□□□□□ -0.29
CHD3-211ENST00000481999 NR0B2Q15466 257 aa13.22□□□□□ -0.29
CHD3-211ENST00000481999 TRIM61Q5EBN2 209 aa13.22□□□□□ -0.29
CHD3-211ENST00000481999 POMZP3Q6PJE2 187 aa13.22□□□□□ -0.29
CHD3-211ENST00000481999 MARCH9Q86YJ5 346 aa13.22□□□□□ -0.29
CHD3-211ENST00000481999 ATP6V1C2Q8NEY4 427 aa13.22□□□□□ -0.29
CHD3-211ENST00000481999 OR5M3Q8NGP4 307 aa13.22□□□□□ -0.29
CHD3-211ENST00000481999 STT3BQ8TCJ2 826 aa13.22□□□□□ -0.29
CHD3-211ENST00000481999 PMEPA1Q969W9 287 aa13.22□□□□□ -0.29
CHD3-211ENST00000481999 ADIPOR1Q96A54 375 aa13.22□□□□□ -0.29
CHD3-211ENST00000481999 CCDC74BQ96LY2 380 aa13.22□□□□□ -0.29
CHD3-211ENST00000481999 OR1F2PQ96R84 312 aa13.22□□□□□ -0.29
CHD3-211ENST00000481999 ZNF649Q9BS31 505 aa13.22□□□□□ -0.29
CHD3-211ENST00000481999 SEMA5BQ9P283 1151 aa13.22□□□□□ -0.29
CHD3-211ENST00000481999 SIGLEC7Q9Y286 467 aa13.22□□□□□ -0.29
CHD3-211ENST00000481999 MED31Q9Y3C7 131 aa13.22□□□□□ -0.29
CHD3-211ENST00000481999 FAM172BPA6NC97 362 aa13.21□□□□□ -0.29
CHD3-211ENST00000481999 CENPXA8MT69 81 aa13.21□□□□□ -0.29
CHD3-211ENST00000481999 B4DXG7 233 aa13.21□□□□□ -0.29
CHD3-211ENST00000481999 GABRPO00591 440 aa13.21□□□□□ -0.29
CHD3-211ENST00000481999 BHLHE40O14503 412 aa13.21□□□□□ -0.29
CHD3-211ENST00000481999 CHP2O43745 196 aa13.21□□□□□ -0.29
CHD3-211ENST00000481999 ZNF354AO60765 605 aaPredicted RBP13.21□□□□□ -0.29
CHD3-211ENST00000481999 GALP22466 123 aa13.21□□□□□ -0.29
CHD3-211ENST00000481999 PTBP1P26599 531 aaKnown RBP eCLIP13.21□□□□□ -0.291e-13■■■■■ 31.4
CHD3-211ENST00000481999 RCVRNP35243 200 aa13.21□□□□□ -0.29
CHD3-211ENST00000481999 CAV3P56539 151 aa13.21□□□□□ -0.29
CHD3-211ENST00000481999 FHL1Q13642 323 aa13.21□□□□□ -0.29
CHD3-211ENST00000481999 ZNF791Q3KP31 576 aaPredicted RBP13.21□□□□□ -0.29
CHD3-211ENST00000481999 TBRG1Q3YBR2 411 aa13.21□□□□□ -0.29
CHD3-211ENST00000481999 PHF19Q5T6S3 580 aa13.21□□□□□ -0.29
CHD3-211ENST00000481999 WDR5BQ86VZ2 330 aa13.21□□□□□ -0.29
CHD3-211ENST00000481999 GID4Q8IVV7 300 aa13.21□□□□□ -0.29
CHD3-211ENST00000481999 SLC7A5P1Q8MH63 180 aa13.21□□□□□ -0.29
CHD3-211ENST00000481999 NEIL3Q8TAT5 605 aa13.21□□□□□ -0.29
CHD3-211ENST00000481999 BRIX1Q8TDN6 353 aaKnown RBP13.21□□□□□ -0.29
CHD3-211ENST00000481999 SPRYD4Q8WW59 207 aaPredicted RBP13.21□□□□□ -0.29
CHD3-211ENST00000481999 TBX5Q99593 518 aa13.21□□□□□ -0.29
CHD3-211ENST00000481999 ZNF559Q9BR84 538 aa13.21□□□□□ -0.29
CHD3-211ENST00000481999 G6PC3Q9BUM1 346 aa13.21□□□□□ -0.29
CHD3-211ENST00000481999 IFT27Q9BW83 186 aa13.21□□□□□ -0.29
CHD3-211ENST00000481999 HDHD5Q9BXW7 423 aa13.21□□□□□ -0.29
CHD3-211ENST00000481999 POLE3Q9NRF9 147 aa13.21□□□□□ -0.29
CHD3-211ENST00000481999 C2orf92A0A1B0GVN3 265 aa13.21□□□□□ -0.29
CHD3-211ENST00000481999 KHNYNO15037 678 aaKnown RBP13.21□□□□□ -0.29
CHD3-211ENST00000481999 PPP1R3DO95685 299 aa13.21□□□□□ -0.29
CHD3-211ENST00000481999 SLC2A2P11168 524 aaPredicted RBP13.21□□□□□ -0.29
CHD3-211ENST00000481999 MYL9P24844 172 aa13.21□□□□□ -0.29
CHD3-211ENST00000481999 BDH1Q02338 343 aa13.21□□□□□ -0.29
CHD3-211ENST00000481999 EBPQ15125 230 aaKnown RBP13.21□□□□□ -0.29
CHD3-211ENST00000481999 KLHL26Q53HC5 615 aa13.21□□□□□ -0.29
CHD3-211ENST00000481999 TRIQKQ629K1 86 aa13.21□□□□□ -0.29
CHD3-211ENST00000481999 MZT2AQ6P582 158 aa13.21□□□□□ -0.29
CHD3-211ENST00000481999 ZNF613Q6PF04 617 aa13.21□□□□□ -0.29
CHD3-211ENST00000481999 CNIH2Q6PI25 160 aa13.21□□□□□ -0.29
CHD3-211ENST00000481999 ZNF322Q6U7Q0 402 aaPredicted RBP13.21□□□□□ -0.29
CHD3-211ENST00000481999 CXXC5Q7LFL8 322 aaKnown RBP13.21□□□□□ -0.29
CHD3-211ENST00000481999 BMP8AQ7Z5Y6 402 aa13.21□□□□□ -0.29
CHD3-211ENST00000481999 SIRT6Q8N6T7 355 aa13.21□□□□□ -0.29
CHD3-211ENST00000481999 ENKURQ8TC29 256 aa13.21□□□□□ -0.29
CHD3-211ENST00000481999 DNAJA4Q8WW22 397 aaPredicted RBP13.21□□□□□ -0.29
CHD3-211ENST00000481999 C8orf44Q96CB5 159 aa13.21□□□□□ -0.29
CHD3-211ENST00000481999 MVB12AQ96EY5 273 aa13.21□□□□□ -0.29
CHD3-211ENST00000481999 HS6ST2Q96MM7 605 aa13.21□□□□□ -0.29
CHD3-211ENST00000481999 FRMD6Q96NE9 622 aa13.21□□□□□ -0.29
CHD3-211ENST00000481999 ATF6BQ99941 703 aa13.21□□□□□ -0.29
CHD3-211ENST00000481999 SOSTQ9BQB4 213 aa13.21□□□□□ -0.29
CHD3-211ENST00000481999 PPP1R3EQ9H7J1 279 aa13.21□□□□□ -0.29
CHD3-211ENST00000481999 ADAM18Q9Y3Q7 739 aa13.21□□□□□ -0.29
CHD3-211ENST00000481999 C2orf72A6NCS6 295 aa13.2□□□□□ -0.3
CHD3-211ENST00000481999 PLA2G10O15496 165 aa13.2□□□□□ -0.3
CHD3-211ENST00000481999 REM1O75628 298 aa13.2□□□□□ -0.3
CHD3-211ENST00000481999 UTS2O95399 124 aa13.2□□□□□ -0.3
CHD3-211ENST00000481999 HLA-DQB1P01920 261 aa13.2□□□□□ -0.3
CHD3-211ENST00000481999 HPGDP15428 266 aa13.2□□□□□ -0.3
CHD3-211ENST00000481999 TOMM34Q15785 309 aaPredicted RBP13.2□□□□□ -0.3
CHD3-211ENST00000481999 ZNF362Q5T0B9 420 aaPredicted RBP13.2□□□□□ -0.3
CHD3-211ENST00000481999 OAFQ86UD1 273 aa13.2□□□□□ -0.3
CHD3-211ENST00000481999 Q8N402 240 aa13.2□□□□□ -0.3
CHD3-211ENST00000481999 C19orf18Q8NEA5 215 aa13.2□□□□□ -0.3
CHD3-211ENST00000481999 DCLRE1CQ96SD1 692 aaKnown RBP13.2□□□□□ -0.3
CHD3-211ENST00000481999 DUSP23Q9BVJ7 150 aa13.2□□□□□ -0.3
CHD3-211ENST00000481999 TTTY10Q9BZA0 68 aa13.2□□□□□ -0.3
CHD3-211ENST00000481999 RNF121Q9H920 327 aa13.2□□□□□ -0.3
CHD3-211ENST00000481999 ST6GALNAC1Q9NSC7 600 aaPredicted RBP13.2□□□□□ -0.3
CHD3-211ENST00000481999 PRODH2Q9UF12 536 aa13.2□□□□□ -0.3
CHD3-211ENST00000481999 CCDC163A0A0D9SF12 145 aa13.2□□□□□ -0.3
CHD3-211ENST00000481999 TEX51A0A1B0GUA7 166 aa13.2□□□□□ -0.3
CHD3-211ENST00000481999 BLACEA4D250 179 aa13.2□□□□□ -0.3
CHD3-211ENST00000481999 SCRG1O75711 98 aa13.2□□□□□ -0.3
CHD3-211ENST00000481999 SERPINI2O75830 405 aa13.2□□□□□ -0.3
CHD3-211ENST00000481999 MRPL3P09001 348 aaKnown RBP13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms