RNA–Protein interactions for RNA: ENST00000475482.5

CPSF3-203, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 4

Gene CPSF3, Length 871 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-203ENST00000475482 CLIP4Q8N3C7 705 aa14.09□□□□□ -0.15
CPSF3-203ENST00000475482 RELL2Q8NC24 303 aaPredicted RBP14.09□□□□□ -0.15
CPSF3-203ENST00000475482 MAGEE2Q8TD90 523 aaPredicted RBP14.09□□□□□ -0.15
CPSF3-203ENST00000475482 GIPC3Q8TF64 312 aa14.09□□□□□ -0.15
CPSF3-203ENST00000475482 MCHR1Q99705 422 aa14.09□□□□□ -0.15
CPSF3-203ENST00000475482 ZNF559Q9BR84 538 aa14.09□□□□□ -0.15
CPSF3-203ENST00000475482 RTN4RQ9BZR6 473 aa14.09□□□□□ -0.15
CPSF3-203ENST00000475482 NMNAT1Q9HAN9 279 aaPredicted RBP14.09□□□□□ -0.15
CPSF3-203ENST00000475482 SMPD3Q9NY59 655 aaPredicted RBP14.09□□□□□ -0.15
CPSF3-203ENST00000475482 PDP1Q9P0J1 537 aaPredicted RBP14.09□□□□□ -0.15
CPSF3-203ENST00000475482 KCNN3Q9UGI6 736 aa14.09□□□□□ -0.15
CPSF3-203ENST00000475482 NPIPA5A0A0B4J1W7 369 aa14.08□□□□□ -0.16
CPSF3-203ENST00000475482 A0A1W2PQD3 144 aa14.08□□□□□ -0.16
CPSF3-203ENST00000475482 A0A1W2PRQ8 180 aa14.08□□□□□ -0.16
CPSF3-203ENST00000475482 NPIPA7E9PJI5 369 aa14.08□□□□□ -0.16
CPSF3-203ENST00000475482 CCNB2O95067 398 aa14.08□□□□□ -0.16
CPSF3-203ENST00000475482 OR5F1O95221 314 aa14.08□□□□□ -0.16
CPSF3-203ENST00000475482 CSTAP01040 98 aa14.08□□□□□ -0.16
CPSF3-203ENST00000475482 NPIPA8P0DM63 369 aa14.08□□□□□ -0.16
CPSF3-203ENST00000475482 CHMP24386 653 aa14.08□□□□□ -0.16
CPSF3-203ENST00000475482 ZNF136P52737 540 aa14.08□□□□□ -0.16
CPSF3-203ENST00000475482 B3GALT5-AS1P59052 145 aa14.08□□□□□ -0.16
CPSF3-203ENST00000475482 TLE4Q04727 773 aa14.08□□□□□ -0.16
CPSF3-203ENST00000475482 DGCR6Q14129 220 aa14.08□□□□□ -0.16
CPSF3-203ENST00000475482 GANABQ14697 944 aaKnown RBP14.08□□□□□ -0.16
CPSF3-203ENST00000475482 TRAM2Q15035 370 aa14.08□□□□□ -0.16
CPSF3-203ENST00000475482 MICAQ29983 383 aa14.08□□□□□ -0.16
CPSF3-203ENST00000475482 PLEKHM3Q6ZWE6 761 aa14.08□□□□□ -0.16
CPSF3-203ENST00000475482 OFCC1Q8IZS5 231 aa14.08□□□□□ -0.16
CPSF3-203ENST00000475482 OR4C3Q8NH37 302 aa14.08□□□□□ -0.16
CPSF3-203ENST00000475482 DTNBP1Q96EV8 351 aa14.08□□□□□ -0.16
CPSF3-203ENST00000475482 DHRS1Q96LJ7 313 aa14.08□□□□□ -0.16
CPSF3-203ENST00000475482 ALPK1Q96QP1 1244 aa14.08□□□□□ -0.16
CPSF3-203ENST00000475482 SLC29A1Q99808 456 aa14.08□□□□□ -0.16
CPSF3-203ENST00000475482 TBL1XR1Q9BZK7 514 aa14.08□□□□□ -0.16
CPSF3-203ENST00000475482 ZNF556Q9HAH1 456 aa14.08□□□□□ -0.16
CPSF3-203ENST00000475482 TMEM27Q9HBJ8 222 aa14.08□□□□□ -0.16
CPSF3-203ENST00000475482 SLC24A3Q9HC58 644 aa14.08□□□□□ -0.16
CPSF3-203ENST00000475482 ACER3Q9NUN7 267 aa14.08□□□□□ -0.16
CPSF3-203ENST00000475482 RLIMQ9NVW2 624 aa14.08□□□□□ -0.16
CPSF3-203ENST00000475482 TAS2R10Q9NYW0 307 aa14.08□□□□□ -0.16
CPSF3-203ENST00000475482 FLRT3Q9NZU0 649 aa14.08□□□□□ -0.16
CPSF3-203ENST00000475482 ENOPH1Q9UHY7 261 aa14.08□□□□□ -0.16
CPSF3-203ENST00000475482 KCNE5Q9UJ90 142 aa14.08□□□□□ -0.16
CPSF3-203ENST00000475482 CAMK2AQ9UQM7 478 aa14.08□□□□□ -0.16
CPSF3-203ENST00000475482 AKAP6Q13023 2319 aa14.08□□□□□ -0.16
CPSF3-203ENST00000475482 ABCA4P78363 2273 aa14.07□□□□□ -0.16
CPSF3-203ENST00000475482 IGLV3-32A0A0A0MS00 114 aa14.07□□□□□ -0.16
CPSF3-203ENST00000475482 C17orf51A8MQB3 221 aa14.07□□□□□ -0.16
CPSF3-203ENST00000475482 J3KTA2 159 aa14.07□□□□□ -0.16
CPSF3-203ENST00000475482 GTPBP1O00178 669 aaKnown RBP14.07□□□□□ -0.16
CPSF3-203ENST00000475482 FAAHO00519 579 aa14.07□□□□□ -0.16
CPSF3-203ENST00000475482 IL18BPO95998 194 aa14.07□□□□□ -0.16
CPSF3-203ENST00000475482 IL2RAP01589 272 aa14.07□□□□□ -0.16
CPSF3-203ENST00000475482 ALPLP05186 524 aa14.07□□□□□ -0.16
CPSF3-203ENST00000475482 IFNGR2P38484 337 aa14.07□□□□□ -0.16
CPSF3-203ENST00000475482 LHX2P50458 406 aa14.07□□□□□ -0.16
CPSF3-203ENST00000475482 IST1P53990 364 aa14.07□□□□□ -0.16
CPSF3-203ENST00000475482 DSCR4P56555 118 aaPredicted RBP14.07□□□□□ -0.16
CPSF3-203ENST00000475482 CLDN18P56856 261 aa14.07□□□□□ -0.16
CPSF3-203ENST00000475482 PPP2R2BQ00005 443 aa14.07□□□□□ -0.16
CPSF3-203ENST00000475482 BCL2A1Q16548 175 aa14.07□□□□□ -0.16
CPSF3-203ENST00000475482 FGD3Q5JSP0 725 aa14.07□□□□□ -0.16
CPSF3-203ENST00000475482 OR5M10Q6IEU7 315 aa14.07□□□□□ -0.16
CPSF3-203ENST00000475482 MISPQ8IVT2 679 aa14.07□□□□□ -0.16
CPSF3-203ENST00000475482 ATG16L2Q8NAA4 619 aa14.07□□□□□ -0.16
CPSF3-203ENST00000475482 OR2M3Q8NG83 312 aa14.07□□□□□ -0.16
CPSF3-203ENST00000475482 OR4D11Q8NGI4 311 aa14.07□□□□□ -0.16
CPSF3-203ENST00000475482 OR4C15Q8NGM1 316 aa14.07□□□□□ -0.16
CPSF3-203ENST00000475482 OR52J3Q8NH60 311 aa14.07□□□□□ -0.16
CPSF3-203ENST00000475482 OR14L1PQ8NHC6 308 aa14.07□□□□□ -0.16
CPSF3-203ENST00000475482 SLC38A4Q969I6 547 aa14.07□□□□□ -0.16
CPSF3-203ENST00000475482 PSD2Q9BQI7 771 aa14.07□□□□□ -0.16
CPSF3-203ENST00000475482 RSPO3Q9BXY4 272 aaPredicted RBP14.07□□□□□ -0.16
CPSF3-203ENST00000475482 TRIM2Q9C040 744 aa14.07□□□□□ -0.16
CPSF3-203ENST00000475482 KRCC1Q9NPI7 259 aaPredicted RBP14.07□□□□□ -0.16
CPSF3-203ENST00000475482 EXOSC3Q9NQT5 275 aaKnown RBP14.07□□□□□ -0.16
CPSF3-203ENST00000475482 VNN3Q9NY84 501 aa14.07□□□□□ -0.16
CPSF3-203ENST00000475482 SELENONQ9NZV5 590 aa14.07□□□□□ -0.16
CPSF3-203ENST00000475482 JKAMPQ9P055 326 aa14.07□□□□□ -0.16
CPSF3-203ENST00000475482 A4GNTQ9UNA3 340 aa14.07□□□□□ -0.16
CPSF3-203ENST00000475482 LRCH1Q9Y2L9 728 aa14.07□□□□□ -0.16
CPSF3-203ENST00000475482 CHST2Q9Y4C5 530 aa14.07□□□□□ -0.16
CPSF3-203ENST00000475482 TRAPPC13A5PLN9 417 aa14.06□□□□□ -0.16
CPSF3-203ENST00000475482 DVL2O14641 736 aa14.06□□□□□ -0.16
CPSF3-203ENST00000475482 UBL4AP11441 157 aa14.06□□□□□ -0.16
CPSF3-203ENST00000475482 ZNF708P17019 499 aa14.06□□□□□ -0.16
CPSF3-203ENST00000475482 DPP4P27487 766 aa14.06□□□□□ -0.16
CPSF3-203ENST00000475482 SLC6A8P48029 635 aa14.06□□□□□ -0.16
CPSF3-203ENST00000475482 LIMS1P48059 325 aa14.06□□□□□ -0.16
CPSF3-203ENST00000475482 COPZ1P61923 177 aa14.06□□□□□ -0.16
CPSF3-203ENST00000475482 PIN1Q13526 163 aaPredicted RBP14.06□□□□□ -0.16
CPSF3-203ENST00000475482 NPTX1Q15818 432 aa14.06□□□□□ -0.16
CPSF3-203ENST00000475482 EXOC3L2Q2M3D2 409 aa14.06□□□□□ -0.16
CPSF3-203ENST00000475482 ENTPD8Q5MY95 495 aa14.06□□□□□ -0.16
CPSF3-203ENST00000475482 ZNF613Q6PF04 617 aa14.06□□□□□ -0.16
CPSF3-203ENST00000475482 APOOLQ6UXV4 268 aa14.06□□□□□ -0.16
CPSF3-203ENST00000475482 RRM2BQ7LG56 351 aa14.06□□□□□ -0.16
CPSF3-203ENST00000475482 TMEM179BQ7Z7N9 219 aa14.06□□□□□ -0.16
CPSF3-203ENST00000475482 COMTD1Q86VU5 262 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms