RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 VEZF1Q14119 521 aa16.53■□□□□ 0.24
CCDC88B-206ENST00000473405 SLC17A1Q14916 467 aa16.53■□□□□ 0.24
CCDC88B-206ENST00000473405 GABRA6Q16445 453 aa16.53■□□□□ 0.24
CCDC88B-206ENST00000473405 CASP12Q6UXS9 341 aa16.53■□□□□ 0.24
CCDC88B-206ENST00000473405 PRIMA1Q86XR5 153 aa16.53■□□□□ 0.24
CCDC88B-206ENST00000473405 VRK2Q86Y07 508 aa16.53■□□□□ 0.24
CCDC88B-206ENST00000473405 PEX5LQ8IYB4 626 aa16.53■□□□□ 0.24
CCDC88B-206ENST00000473405 OR52E4Q8NGH9 312 aa16.53■□□□□ 0.24
CCDC88B-206ENST00000473405 OR52N5Q8NH56 324 aa16.53■□□□□ 0.24
CCDC88B-206ENST00000473405 SLC38A5Q8WUX1 472 aa16.53■□□□□ 0.24
CCDC88B-206ENST00000473405 TRMT61AQ96FX7 289 aaKnown RBP16.53■□□□□ 0.24
CCDC88B-206ENST00000473405 AURKBQ96GD4 344 aaPredicted RBP16.53■□□□□ 0.24
CCDC88B-206ENST00000473405 AMBRA1Q9C0C7 1298 aa16.53■□□□□ 0.24
CCDC88B-206ENST00000473405 SLCO5A1Q9H2Y9 848 aa16.53■□□□□ 0.24
CCDC88B-206ENST00000473405 MANSC1Q9H8J5 431 aa16.53■□□□□ 0.24
CCDC88B-206ENST00000473405 ZIM2Q9NZV7 527 aa16.53■□□□□ 0.24
CCDC88B-206ENST00000473405 HEATR1Q9H583 2144 aaKnown RBP16.52■□□□□ 0.24
CCDC88B-206ENST00000473405 FBN3Q75N90 2809 aa16.52■□□□□ 0.24
CCDC88B-206ENST00000473405 A0A1W2PR80 420 aa16.52■□□□□ 0.24
CCDC88B-206ENST00000473405 CCT8L1PA6NM43 557 aa16.52■□□□□ 0.24
CCDC88B-206ENST00000473405 NDUFS7O75251 213 aa16.52■□□□□ 0.24
CCDC88B-206ENST00000473405 BCHEP06276 602 aa16.52■□□□□ 0.24
CCDC88B-206ENST00000473405 GKN3PP0CG01 181 aa16.52■□□□□ 0.24
CCDC88B-206ENST00000473405 UQCRBP14927 111 aa16.52■□□□□ 0.24
CCDC88B-206ENST00000473405 GSTA3Q16772 222 aa16.52■□□□□ 0.24
CCDC88B-206ENST00000473405 LIN52Q52LA3 116 aa16.52■□□□□ 0.24
CCDC88B-206ENST00000473405 RPS26P11Q5JNZ5 115 aaPredicted RBP16.52■□□□□ 0.24
CCDC88B-206ENST00000473405 PAQR6Q6TCH4 344 aa16.52■□□□□ 0.24
CCDC88B-206ENST00000473405 DNM1P46Q6ZS02 220 aa16.52■□□□□ 0.24
CCDC88B-206ENST00000473405 MSANTD1Q6ZTZ1 278 aa16.52■□□□□ 0.24
CCDC88B-206ENST00000473405 ZNF440Q8IYI8 595 aa16.52■□□□□ 0.24
CCDC88B-206ENST00000473405 MAPK1IP1LQ8NDC0 245 aa16.52■□□□□ 0.24
CCDC88B-206ENST00000473405 OR52P1PQ8NH57 321 aa16.52■□□□□ 0.24
CCDC88B-206ENST00000473405 MUS81Q96NY9 551 aa16.52■□□□□ 0.24
CCDC88B-206ENST00000473405 GRIP2Q9C0E4 1043 aa16.52■□□□□ 0.24
CCDC88B-206ENST00000473405 TPT1P8Q9HAU6 139 aa16.52■□□□□ 0.24
CCDC88B-206ENST00000473405 SLC7A10Q9NS82 523 aa16.52■□□□□ 0.24
CCDC88B-206ENST00000473405 SLC9A8Q9Y2E8 581 aa16.52■□□□□ 0.24
CCDC88B-206ENST00000473405 CHST2Q9Y4C5 530 aa16.52■□□□□ 0.24
CCDC88B-206ENST00000473405 CIB4A0PJX0 185 aa16.51■□□□□ 0.23
CCDC88B-206ENST00000473405 LIPT2A6NK58 231 aa16.51■□□□□ 0.23
CCDC88B-206ENST00000473405 RNF223E7ERA6 249 aa16.51■□□□□ 0.23
CCDC88B-206ENST00000473405 KLF11O14901 512 aa16.51■□□□□ 0.23
CCDC88B-206ENST00000473405 ACVR1BP36896 505 aa16.51■□□□□ 0.23
CCDC88B-206ENST00000473405 CRATP43155 626 aa16.51■□□□□ 0.23
CCDC88B-206ENST00000473405 ZNF83P51522 516 aa16.51■□□□□ 0.23
CCDC88B-206ENST00000473405 CRISP3P54108 245 aa16.51■□□□□ 0.23
CCDC88B-206ENST00000473405 DSTNP60981 165 aa16.51■□□□□ 0.23
CCDC88B-206ENST00000473405 SLC25A3Q00325 362 aa16.51■□□□□ 0.23
CCDC88B-206ENST00000473405 RNF220Q5VTB9 566 aa16.51■□□□□ 0.23
CCDC88B-206ENST00000473405 TMEM108Q6UXF1 575 aa16.51■□□□□ 0.23
CCDC88B-206ENST00000473405 ZIC4Q8N9L1 334 aa16.51■□□□□ 0.23
CCDC88B-206ENST00000473405 ITCHQ96J02 903 aa16.51■□□□□ 0.23
CCDC88B-206ENST00000473405 TMBIM4Q9HC24 238 aa16.51■□□□□ 0.23
CCDC88B-206ENST00000473405 NKIRAS1Q9NYS0 192 aa16.51■□□□□ 0.23
CCDC88B-206ENST00000473405 GDF2Q9UK05 429 aaPredicted RBP16.51■□□□□ 0.23
CCDC88B-206ENST00000473405 ZNF443Q9Y2A4 671 aaPredicted RBP16.51■□□□□ 0.23
CCDC88B-206ENST00000473405 CHD3Q12873 2000 aaKnown RBP16.51■□□□□ 0.23
CCDC88B-206ENST00000473405 ALPK2Q86TB3 2170 aa16.5■□□□□ 0.23
CCDC88B-206ENST00000473405 UBDO15205 165 aa16.5■□□□□ 0.23
CCDC88B-206ENST00000473405 PRG2P13727 222 aa16.5■□□□□ 0.23
CCDC88B-206ENST00000473405 HOXB9P17482 250 aaPredicted RBP16.5■□□□□ 0.23
CCDC88B-206ENST00000473405 PTNP21246 168 aa16.5■□□□□ 0.23
CCDC88B-206ENST00000473405 CD40P25942 277 aa16.5■□□□□ 0.23
CCDC88B-206ENST00000473405 IDUAP35475 653 aa16.5■□□□□ 0.23
CCDC88B-206ENST00000473405 POLR2JP52435 117 aaKnown RBP16.5■□□□□ 0.23
CCDC88B-206ENST00000473405 CEACAM7Q14002 265 aa16.5■□□□□ 0.23
CCDC88B-206ENST00000473405 OTUD3Q5T2D3 398 aaPredicted RBP16.5■□□□□ 0.23
CCDC88B-206ENST00000473405 TSPO2Q5TGU0 170 aa16.5■□□□□ 0.23
CCDC88B-206ENST00000473405 C9orf135Q5VTT2 229 aa16.5■□□□□ 0.23
CCDC88B-206ENST00000473405 OR7E24Q6IFN5 339 aa16.5■□□□□ 0.23
CCDC88B-206ENST00000473405 B3GLCTQ6Y288 498 aa16.5■□□□□ 0.23
CCDC88B-206ENST00000473405 PIAS4Q8N2W9 510 aaPredicted RBP16.5■□□□□ 0.23
CCDC88B-206ENST00000473405 CLIP4Q8N3C7 705 aa16.5■□□□□ 0.23
CCDC88B-206ENST00000473405 TMEM99Q8N816 258 aa16.5■□□□□ 0.23
CCDC88B-206ENST00000473405 WDR31Q8NA23 367 aa16.5■□□□□ 0.23
CCDC88B-206ENST00000473405 TMEM45BQ96B21 275 aa16.5■□□□□ 0.23
CCDC88B-206ENST00000473405 TMEM19Q96HH6 336 aa16.5■□□□□ 0.23
CCDC88B-206ENST00000473405 NAA11Q9BSU3 229 aaPredicted RBP16.5■□□□□ 0.23
CCDC88B-206ENST00000473405 FAIMQ9NVQ4 179 aa16.5■□□□□ 0.23
CCDC88B-206ENST00000473405 CALML5Q9NZT1 146 aa16.5■□□□□ 0.23
CCDC88B-206ENST00000473405 DCTN4Q9UJW0 460 aa16.5■□□□□ 0.23
CCDC88B-206ENST00000473405 AQP7P3A6NL99 342 aa16.49■□□□□ 0.23
CCDC88B-206ENST00000473405 E7EQL1 145 aa16.49■□□□□ 0.23
CCDC88B-206ENST00000473405 AKR7A3O95154 331 aa16.49■□□□□ 0.23
CCDC88B-206ENST00000473405 ANP32DO95626 131 aa16.49■□□□□ 0.23
CCDC88B-206ENST00000473405 GPIP06744 558 aa16.49■□□□□ 0.23
CCDC88B-206ENST00000473405 CXCR1P25024 350 aa16.49■□□□□ 0.23
CCDC88B-206ENST00000473405 PTAFRP25105 342 aa16.49■□□□□ 0.23
CCDC88B-206ENST00000473405 P2RY4P51582 365 aa16.49■□□□□ 0.23
CCDC88B-206ENST00000473405 BNIP2Q12982 314 aa16.49■□□□□ 0.23
CCDC88B-206ENST00000473405 OR7A5Q15622 319 aa16.49■□□□□ 0.23
CCDC88B-206ENST00000473405 BEND6Q5SZJ8 279 aaPredicted RBP16.49■□□□□ 0.23
CCDC88B-206ENST00000473405 WBP2NLQ6ICG8 309 aa16.49■□□□□ 0.23
CCDC88B-206ENST00000473405 C11orf71Q6IPW1 123 aa16.49■□□□□ 0.23
CCDC88B-206ENST00000473405 CADM2Q8N3J6 435 aa16.49■□□□□ 0.23
CCDC88B-206ENST00000473405 C1orf162Q8NEQ5 155 aaPredicted RBP16.49■□□□□ 0.23
CCDC88B-206ENST00000473405 OR9K2Q8NGE7 335 aa16.49■□□□□ 0.23
CCDC88B-206ENST00000473405 GTF2H4Q92759 462 aa16.49■□□□□ 0.23
CCDC88B-206ENST00000473405 RADILQ96JH8 1075 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms