RNA–Protein interactions for RNA: ENST00000462482.1

SKA3-204, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 750 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-204ENST00000462482 PRDM4Q9UKN5 801 aa13.51□□□□□ -0.25
SKA3-204ENST00000462482 FLVCR1Q9Y5Y0 555 aa13.51□□□□□ -0.25
SKA3-204ENST00000462482 FKBP7Q9Y680 259 aa13.51□□□□□ -0.25
SKA3-204ENST00000462482 TMEM72A0PK05 275 aa13.5□□□□□ -0.25
SKA3-204ENST00000462482 AGAP5A6NIR3 686 aa13.5□□□□□ -0.25
SKA3-204ENST00000462482 ELOA3DA6NLF2 546 aaPredicted RBP13.5□□□□□ -0.25
SKA3-204ENST00000462482 CLDN24A6NM45 220 aa13.5□□□□□ -0.25
SKA3-204ENST00000462482 HMGN4O00479 90 aa13.5□□□□□ -0.25
SKA3-204ENST00000462482 FAAHO00519 579 aa13.5□□□□□ -0.25
SKA3-204ENST00000462482 AP3D1O14617 1153 aa13.5□□□□□ -0.25
SKA3-204ENST00000462482 TM9SF1O15321 606 aa13.5□□□□□ -0.25
SKA3-204ENST00000462482 FAM157CP0CG43 387 aa13.5□□□□□ -0.25
SKA3-204ENST00000462482 MPGP29372 298 aa13.5□□□□□ -0.25
SKA3-204ENST00000462482 COPZ1P61923 177 aa13.5□□□□□ -0.25
SKA3-204ENST00000462482 PHC1P78364 1004 aa13.5□□□□□ -0.25
SKA3-204ENST00000462482 H3F3AP84243 136 aa13.5□□□□□ -0.25
SKA3-204ENST00000462482 VLDLRP98155 873 aa13.5□□□□□ -0.25
SKA3-204ENST00000462482 STX3Q13277 289 aa13.5□□□□□ -0.25
SKA3-204ENST00000462482 SYPL1Q16563 259 aa13.5□□□□□ -0.25
SKA3-204ENST00000462482 ELOA3BQ3SY89 546 aa13.5□□□□□ -0.25
SKA3-204ENST00000462482 OTUD3Q5T2D3 398 aaPredicted RBP13.5□□□□□ -0.25
SKA3-204ENST00000462482 TSPO2Q5TGU0 170 aa13.5□□□□□ -0.25
SKA3-204ENST00000462482 ZNF621Q6ZSS3 439 aa13.5□□□□□ -0.25
SKA3-204ENST00000462482 AAED1Q7RTV5 226 aa13.5□□□□□ -0.25
SKA3-204ENST00000462482 ZNF525Q8N782 197 aa13.5□□□□□ -0.25
SKA3-204ENST00000462482 ANKFN1Q8N957 763 aa13.5□□□□□ -0.25
SKA3-204ENST00000462482 POMGNT2Q8NAT1 580 aa13.5□□□□□ -0.25
SKA3-204ENST00000462482 ELOA3Q8NG57 546 aa13.5□□□□□ -0.25
SKA3-204ENST00000462482 HTRA1Q92743 480 aa13.5□□□□□ -0.25
SKA3-204ENST00000462482 PROX1Q92786 737 aa13.5□□□□□ -0.25
SKA3-204ENST00000462482 TMEM109Q9BVC6 243 aa13.5□□□□□ -0.25
SKA3-204ENST00000462482 SF3B5Q9BWJ5 86 aaKnown RBP13.5□□□□□ -0.25
SKA3-204ENST00000462482 TAPBPLQ9BX59 468 aa13.5□□□□□ -0.25
SKA3-204ENST00000462482 AMBRA1Q9C0C7 1298 aa13.5□□□□□ -0.25
SKA3-204ENST00000462482 SLC7A10Q9NS82 523 aa13.5□□□□□ -0.25
SKA3-204ENST00000462482 ZANQ9Y493 2812 aa13.49□□□□□ -0.25
SKA3-204ENST00000462482 KRT75O95678 551 aa13.49□□□□□ -0.25
SKA3-204ENST00000462482 IMPDH2P12268 514 aa13.49□□□□□ -0.25
SKA3-204ENST00000462482 CDH2P19022 906 aaPredicted RBP13.49□□□□□ -0.25
SKA3-204ENST00000462482 PAX7P23759 505 aa13.49□□□□□ -0.25
SKA3-204ENST00000462482 NTF4P34130 210 aa13.49□□□□□ -0.25
SKA3-204ENST00000462482 NME5P56597 212 aa13.49□□□□□ -0.25
SKA3-204ENST00000462482 SLC17A1Q14916 467 aa13.49□□□□□ -0.25
SKA3-204ENST00000462482 TMEM225Q6GV28 225 aa13.49□□□□□ -0.25
SKA3-204ENST00000462482 B3GLCTQ6Y288 498 aa13.49□□□□□ -0.25
SKA3-204ENST00000462482 GPAT4Q86UL3 456 aa13.49□□□□□ -0.25
SKA3-204ENST00000462482 WDR31Q8NA23 367 aa13.49□□□□□ -0.25
SKA3-204ENST00000462482 TMEM45BQ96B21 275 aa13.49□□□□□ -0.25
SKA3-204ENST00000462482 OR52E6Q96RD3 313 aa13.49□□□□□ -0.25
SKA3-204ENST00000462482 SHARPINQ9H0F6 387 aa13.49□□□□□ -0.25
SKA3-204ENST00000462482 SLC38A1Q9H2H9 487 aa13.49□□□□□ -0.25
SKA3-204ENST00000462482 CENPHQ9H3R5 247 aa13.49□□□□□ -0.25
SKA3-204ENST00000462482 PIF1Q9H611 641 aa13.49□□□□□ -0.25
SKA3-204ENST00000462482 ARMC7Q9H6L4 198 aa13.49□□□□□ -0.25
SKA3-204ENST00000462482 MANSC1Q9H8J5 431 aa13.49□□□□□ -0.25
SKA3-204ENST00000462482 SSU72Q9NP77 194 aaKnown RBP13.49□□□□□ -0.25
SKA3-204ENST00000462482 KCNK9Q9NPC2 374 aa13.49□□□□□ -0.25
SKA3-204ENST00000462482 OBP2BQ9NPH6 170 aa13.49□□□□□ -0.25
SKA3-204ENST00000462482 TMEM45AQ9NWC5 275 aa13.49□□□□□ -0.25
SKA3-204ENST00000462482 CALML5Q9NZT1 146 aa13.49□□□□□ -0.25
SKA3-204ENST00000462482 ATRQ13535 2644 aa13.48□□□□□ -0.25
SKA3-204ENST00000462482 TMEM247A6NEH6 219 aa13.48□□□□□ -0.25
SKA3-204ENST00000462482 PDLIM1O00151 329 aa13.48□□□□□ -0.25
SKA3-204ENST00000462482 PGRP06401 933 aa13.48□□□□□ -0.25
SKA3-204ENST00000462482 CHRM4P08173 479 aa13.48□□□□□ -0.25
SKA3-204ENST00000462482 USF1P22415 310 aaPredicted RBP13.48□□□□□ -0.25
SKA3-204ENST00000462482 PDLIM4P50479 330 aa13.48□□□□□ -0.25
SKA3-204ENST00000462482 FOXG1P55316 489 aaPredicted RBP13.48□□□□□ -0.25
SKA3-204ENST00000462482 UBE2NP61088 152 aaKnown RBP13.48□□□□□ -0.25
SKA3-204ENST00000462482 SNRPD2P62316 118 aaKnown RBP13.48□□□□□ -0.25
SKA3-204ENST00000462482 EPS8Q12929 822 aa13.48□□□□□ -0.25
SKA3-204ENST00000462482 CEACAM7Q14002 265 aa13.48□□□□□ -0.25
SKA3-204ENST00000462482 OR7A5Q15622 319 aa13.48□□□□□ -0.25
SKA3-204ENST00000462482 LIN52Q52LA3 116 aa13.48□□□□□ -0.25
SKA3-204ENST00000462482 MRPL2Q5T653 305 aaKnown RBP13.48□□□□□ -0.25
SKA3-204ENST00000462482 OGFOD2Q6N063 350 aa13.48□□□□□ -0.25
SKA3-204ENST00000462482 SPATA19Q7Z5L4 167 aa13.48□□□□□ -0.25
SKA3-204ENST00000462482 OR9K2Q8NGE7 335 aa13.48□□□□□ -0.25
SKA3-204ENST00000462482 C10orf105Q8TEF2 133 aa13.48□□□□□ -0.25
SKA3-204ENST00000462482 AENQ8WTP8 325 aaKnown RBP13.48□□□□□ -0.25
SKA3-204ENST00000462482 FBXO17Q96EF6 278 aa13.48□□□□□ -0.25
SKA3-204ENST00000462482 PAIP2Q9BPZ3 127 aaKnown RBP13.48□□□□□ -0.25
SKA3-204ENST00000462482 MEAF6Q9HAF1 191 aa13.48□□□□□ -0.25
SKA3-204ENST00000462482 TMEM160Q9NX00 188 aa13.48□□□□□ -0.25
SKA3-204ENST00000462482 P2RX2Q9UBL9 471 aa13.48□□□□□ -0.25
SKA3-204ENST00000462482 COL6A5A8TX70 2615 aa13.47□□□□□ -0.25
SKA3-204ENST00000462482 PRAMEF27A3QJZ7 478 aa13.47□□□□□ -0.25
SKA3-204ENST00000462482 OR6C65A6NJZ3 312 aa13.47□□□□□ -0.25
SKA3-204ENST00000462482 ZNF587BE7ETH6 402 aa13.47□□□□□ -0.25
SKA3-204ENST00000462482 ATP6V1G2-DDX39BF2Z307 99 aa13.47□□□□□ -0.25
SKA3-204ENST00000462482 AKR7A3O95154 331 aa13.47□□□□□ -0.25
SKA3-204ENST00000462482 VAMP5O95183 116 aa13.47□□□□□ -0.25
SKA3-204ENST00000462482 F12P00748 615 aaPredicted RBP13.47□□□□□ -0.25
SKA3-204ENST00000462482 NCF2P19878 526 aaPredicted RBP13.47□□□□□ -0.25
SKA3-204ENST00000462482 BGNP21810 368 aa13.47□□□□□ -0.25
SKA3-204ENST00000462482 GZMKP49863 264 aa13.47□□□□□ -0.25
SKA3-204ENST00000462482 UFM1P61960 85 aa13.47□□□□□ -0.25
SKA3-204ENST00000462482 LSM11P83369 360 aaKnown RBP eCLIP13.47□□□□□ -0.25
SKA3-204ENST00000462482 ZSWIM7Q19AV6 140 aa13.47□□□□□ -0.25
SKA3-204ENST00000462482 WBP2NLQ6ICG8 309 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms