RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 SELPLGQ14242 412 aa11.4□□□□□ -0.58
LINC00339-202ENST00000416769 TMEM176BQ3YBM2 270 aaPredicted RBP11.4□□□□□ -0.58
LINC00339-202ENST00000416769 COX20Q5RI15 118 aa11.4□□□□□ -0.58
LINC00339-202ENST00000416769 TMEM201Q5SNT2 666 aa11.4□□□□□ -0.58
LINC00339-202ENST00000416769 C6orf52Q5T4I8 152 aa11.4□□□□□ -0.58
LINC00339-202ENST00000416769 PODNL1Q6PEZ8 512 aa11.4□□□□□ -0.58
LINC00339-202ENST00000416769 B3GLCTQ6Y288 498 aa11.4□□□□□ -0.58
LINC00339-202ENST00000416769 FCRLAQ7L513 359 aa11.4□□□□□ -0.58
LINC00339-202ENST00000416769 BHLHA15Q7RTS1 189 aaPredicted RBP11.4□□□□□ -0.58
LINC00339-202ENST00000416769 OLIG3Q7RTU3 272 aa11.4□□□□□ -0.58
LINC00339-202ENST00000416769 B4GALNT2Q8NHY0 566 aa11.4□□□□□ -0.58
LINC00339-202ENST00000416769 PNPT1Q8TCS8 783 aaKnown RBP11.4□□□□□ -0.58
LINC00339-202ENST00000416769 XAGE5Q8WWM1 108 aa11.4□□□□□ -0.58
LINC00339-202ENST00000416769 CDS1Q92903 461 aa11.4□□□□□ -0.58
LINC00339-202ENST00000416769 KISS1RQ969F8 398 aaPredicted RBP11.4□□□□□ -0.58
LINC00339-202ENST00000416769 ZBTB8AQ96BR9 441 aa11.4□□□□□ -0.58
LINC00339-202ENST00000416769 DNAJA3Q96EY1 480 aa11.4□□□□□ -0.58
LINC00339-202ENST00000416769 ECSITQ9BQ95 431 aa11.4□□□□□ -0.58
LINC00339-202ENST00000416769 BTBD10Q9BSF8 475 aa11.4□□□□□ -0.58
LINC00339-202ENST00000416769 OR10A4Q9H209 315 aa11.4□□□□□ -0.58
LINC00339-202ENST00000416769 SERHL2Q9H4I8 314 aa11.4□□□□□ -0.58
LINC00339-202ENST00000416769 IKZF5Q9H5V7 419 aa11.4□□□□□ -0.58
LINC00339-202ENST00000416769 EXD2Q9NVH0 621 aa11.4□□□□□ -0.58
LINC00339-202ENST00000416769 CMTM6Q9NX76 183 aa11.4□□□□□ -0.58
LINC00339-202ENST00000416769 TMEM181Q9P2C4 612 aa11.4□□□□□ -0.58
LINC00339-202ENST00000416769 ABCD2Q9UBJ2 740 aa11.4□□□□□ -0.58
LINC00339-202ENST00000416769 MRTO4Q9UKD2 239 aaKnown RBP11.4□□□□□ -0.58
LINC00339-202ENST00000416769 SVEP1Q4LDE5 3571 aa11.4□□□□□ -0.58
LINC00339-202ENST00000416769 HMGN4O00479 90 aa11.39□□□□□ -0.59
LINC00339-202ENST00000416769 GYG2O15488 501 aa11.39□□□□□ -0.59
LINC00339-202ENST00000416769 TLX2O43763 284 aaPredicted RBP11.39□□□□□ -0.59
LINC00339-202ENST00000416769 LY6HO94772 140 aa11.39□□□□□ -0.59
LINC00339-202ENST00000416769 H6PDO95479 791 aa11.39□□□□□ -0.59
LINC00339-202ENST00000416769 AK1P00568 194 aa11.39□□□□□ -0.59
LINC00339-202ENST00000416769 IGHV3-9P01782 118 aa11.39□□□□□ -0.59
LINC00339-202ENST00000416769 NGFRP08138 427 aa11.39□□□□□ -0.59
LINC00339-202ENST00000416769 ETFAP13804 333 aa11.39□□□□□ -0.59
LINC00339-202ENST00000416769 IGHV1-2P23083 117 aa11.39□□□□□ -0.59
LINC00339-202ENST00000416769 CASP9P55211 416 aa11.39□□□□□ -0.59
LINC00339-202ENST00000416769 CDH11P55287 796 aa11.39□□□□□ -0.59
LINC00339-202ENST00000416769 MTPNP58546 118 aa11.39□□□□□ -0.59
LINC00339-202ENST00000416769 DSTNP60981 165 aa11.39□□□□□ -0.59
LINC00339-202ENST00000416769 RPS26P62854 115 aaKnown RBP11.39□□□□□ -0.59
LINC00339-202ENST00000416769 ARHGAP11BQ3KRB8 267 aa11.39□□□□□ -0.59
LINC00339-202ENST00000416769 CHRFAM7AQ494W8 412 aa11.39□□□□□ -0.59
LINC00339-202ENST00000416769 SPATS1Q496A3 300 aa11.39□□□□□ -0.59
LINC00339-202ENST00000416769 RABL3Q5HYI8 236 aa11.39□□□□□ -0.59
LINC00339-202ENST00000416769 AP1ARQ63HQ0 302 aa11.39□□□□□ -0.59
LINC00339-202ENST00000416769 TNFAIP8L2Q6P589 184 aaPredicted RBP11.39□□□□□ -0.59
LINC00339-202ENST00000416769 IL17RELQ6ZVW7 336 aa11.39□□□□□ -0.59
LINC00339-202ENST00000416769 SERPINA11Q86U17 422 aa11.39□□□□□ -0.59
LINC00339-202ENST00000416769 DTX2Q86UW9 622 aa11.39□□□□□ -0.59
LINC00339-202ENST00000416769 CALHM3Q86XJ0 350 aa11.39□□□□□ -0.59
LINC00339-202ENST00000416769 DEFB107AQ8IZN7 70 aa11.39□□□□□ -0.59
LINC00339-202ENST00000416769 ARHGAP24Q8N264 748 aa11.39□□□□□ -0.59
LINC00339-202ENST00000416769 OR5D16Q8NGK9 328 aa11.39□□□□□ -0.59
LINC00339-202ENST00000416769 OR10A6Q8NH74 314 aa11.39□□□□□ -0.59
LINC00339-202ENST00000416769 JADE3Q92613 823 aa11.39□□□□□ -0.59
LINC00339-202ENST00000416769 HS6ST2Q96MM7 605 aa11.39□□□□□ -0.59
LINC00339-202ENST00000416769 ZNF583Q96ND8 569 aa11.39□□□□□ -0.59
LINC00339-202ENST00000416769 CDRT15Q96T59 188 aa11.39□□□□□ -0.59
LINC00339-202ENST00000416769 SPATA9Q9BWV2 254 aa11.39□□□□□ -0.59
LINC00339-202ENST00000416769 BTBD2Q9BX70 525 aa11.39□□□□□ -0.59
LINC00339-202ENST00000416769 POTEKPQ9BYX7 375 aa11.39□□□□□ -0.59
LINC00339-202ENST00000416769 QRSL1Q9H0R6 528 aaKnown RBP11.39□□□□□ -0.59
LINC00339-202ENST00000416769 TMEM38AQ9H6F2 299 aa11.39□□□□□ -0.59
LINC00339-202ENST00000416769 ESRP2Q9H6T0 727 aaKnown RBP11.39□□□□□ -0.59
LINC00339-202ENST00000416769 SPAG4Q9NPE6 437 aa11.39□□□□□ -0.59
LINC00339-202ENST00000416769 GLRX2Q9NS18 164 aa11.39□□□□□ -0.59
LINC00339-202ENST00000416769 CISD1Q9NZ45 108 aaKnown RBP11.39□□□□□ -0.59
LINC00339-202ENST00000416769 CARD8Q9Y2G2 431 aa11.39□□□□□ -0.59
LINC00339-202ENST00000416769 CENPVL1A0A0U1RR11 272 aa11.38□□□□□ -0.59
LINC00339-202ENST00000416769 E7EQL1 145 aa11.38□□□□□ -0.59
LINC00339-202ENST00000416769 NME4O00746 187 aa11.38□□□□□ -0.59
LINC00339-202ENST00000416769 ABCD4O14678 606 aa11.38□□□□□ -0.59
LINC00339-202ENST00000416769 SMAD9O15198 467 aaKnown RBP11.38□□□□□ -0.59
LINC00339-202ENST00000416769 GUSBP08236 651 aa11.38□□□□□ -0.59
LINC00339-202ENST00000416769 ZNF16P17020 682 aaPredicted RBP11.38□□□□□ -0.59
LINC00339-202ENST00000416769 ME2P23368 584 aa11.38□□□□□ -0.59
LINC00339-202ENST00000416769 SLC7A2P52569 658 aa11.38□□□□□ -0.59
LINC00339-202ENST00000416769 FOXG1P55316 489 aaPredicted RBP11.38□□□□□ -0.59
LINC00339-202ENST00000416769 POU6F2P78424 691 aaPredicted RBP11.38□□□□□ -0.59
LINC00339-202ENST00000416769 RBBP4Q09028 425 aa11.38□□□□□ -0.59
LINC00339-202ENST00000416769 P2RY6Q15077 328 aa11.38□□□□□ -0.59
LINC00339-202ENST00000416769 ETFDHQ16134 617 aa11.38□□□□□ -0.59
LINC00339-202ENST00000416769 TMEM249Q2WGJ8 235 aa11.38□□□□□ -0.59
LINC00339-202ENST00000416769 DNAL1Q4LDG9 190 aa11.38□□□□□ -0.59
LINC00339-202ENST00000416769 ATAD3BQ5T9A4 648 aa11.38□□□□□ -0.59
LINC00339-202ENST00000416769 NET1Q7Z628 596 aaPredicted RBP11.38□□□□□ -0.59
LINC00339-202ENST00000416769 ZNF525Q8N782 197 aa11.38□□□□□ -0.59
LINC00339-202ENST00000416769 COX18Q8N8Q8 333 aa11.38□□□□□ -0.59
LINC00339-202ENST00000416769 PHOSPHO1Q8TCT1 267 aa11.38□□□□□ -0.59
LINC00339-202ENST00000416769 RAB8BQ92930 207 aa11.38□□□□□ -0.59
LINC00339-202ENST00000416769 PSD2Q9BQI7 771 aa11.38□□□□□ -0.59
LINC00339-202ENST00000416769 CACNG6Q9BXT2 260 aa11.38□□□□□ -0.59
LINC00339-202ENST00000416769 PAQR5Q9NXK6 330 aaPredicted RBP11.38□□□□□ -0.59
LINC00339-202ENST00000416769 ADA2Q9NZK5 511 aa11.38□□□□□ -0.59
LINC00339-202ENST00000416769 ICAM5Q9UMF0 924 aa11.38□□□□□ -0.59
LINC00339-202ENST00000416769 PRPF19Q9UMS4 504 aaKnown RBP11.38□□□□□ -0.59
LINC00339-202ENST00000416769 ARFGEF3Q5TH69 2177 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms