RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 SLC17A1Q14916 467 aa10.14□□□□□ -0.79
USP4-204ENST00000416417 OR7A5Q15622 319 aa10.14□□□□□ -0.79
USP4-204ENST00000416417 HIKESHIQ53FT3 197 aa10.14□□□□□ -0.79
USP4-204ENST00000416417 RPS26P11Q5JNZ5 115 aaPredicted RBP10.14□□□□□ -0.79
USP4-204ENST00000416417 OTUD3Q5T2D3 398 aaPredicted RBP10.14□□□□□ -0.79
USP4-204ENST00000416417 KLHL17Q6TDP4 642 aa10.14□□□□□ -0.79
USP4-204ENST00000416417 FBXL14Q8N1E6 418 aa10.14□□□□□ -0.79
USP4-204ENST00000416417 MUC15Q8N387 334 aa10.14□□□□□ -0.79
USP4-204ENST00000416417 CADM2Q8N3J6 435 aa10.14□□□□□ -0.79
USP4-204ENST00000416417 MREGQ8N565 214 aa10.14□□□□□ -0.79
USP4-204ENST00000416417 ZIC4Q8N9L1 334 aa10.14□□□□□ -0.79
USP4-204ENST00000416417 ADAD1Q96M93 576 aaKnown RBP10.14□□□□□ -0.79
USP4-204ENST00000416417 REPIN1Q9BWE0 567 aaKnown RBP10.14□□□□□ -0.79
USP4-204ENST00000416417 BARX1Q9HBU1 254 aaPredicted RBP10.14□□□□□ -0.79
USP4-204ENST00000416417 SLC17A5Q9NRA2 495 aa10.14□□□□□ -0.79
USP4-204ENST00000416417 HAO1Q9UJM8 370 aa10.14□□□□□ -0.79
USP4-204ENST00000416417 TRAPPC4Q9Y296 219 aa10.14□□□□□ -0.79
USP4-204ENST00000416417 GPR45Q9Y5Y3 372 aa10.14□□□□□ -0.79
USP4-204ENST00000416417 SONP18583 2426 aaKnown RBP10.14□□□□□ -0.79
USP4-204ENST00000416417 CHD3Q12873 2000 aaKnown RBP10.13□□□□□ -0.79
USP4-204ENST00000416417 CFAP73A6NFT4 308 aa10.13□□□□□ -0.79
USP4-204ENST00000416417 ATP6V1G2-DDX39BF2Z307 99 aa10.13□□□□□ -0.79
USP4-204ENST00000416417 RPS4Y1P22090 263 aaKnown RBP10.13□□□□□ -0.79
USP4-204ENST00000416417 SLC1A3P43003 542 aa10.13□□□□□ -0.79
USP4-204ENST00000416417 WDR4P57081 412 aaKnown RBP10.13□□□□□ -0.79
USP4-204ENST00000416417 HOXC5Q00444 222 aa10.13□□□□□ -0.79
USP4-204ENST00000416417 RAB35Q15286 201 aa10.13□□□□□ -0.79
USP4-204ENST00000416417 DPY19L1Q2PZI1 675 aa10.13□□□□□ -0.79
USP4-204ENST00000416417 HHATQ5VTY9 493 aa10.13□□□□□ -0.79
USP4-204ENST00000416417 AP1ARQ63HQ0 302 aa10.13□□□□□ -0.79
USP4-204ENST00000416417 NXNQ6DKJ4 435 aa10.13□□□□□ -0.79
USP4-204ENST00000416417 OGFOD2Q6N063 350 aa10.13□□□□□ -0.79
USP4-204ENST00000416417 ZNF836Q6ZNA1 936 aa10.13□□□□□ -0.79
USP4-204ENST00000416417 LRRC74BQ6ZQY2 392 aa10.13□□□□□ -0.79
USP4-204ENST00000416417 GPAT4Q86UL3 456 aa10.13□□□□□ -0.79
USP4-204ENST00000416417 CLIP4Q8N3C7 705 aa10.13□□□□□ -0.79
USP4-204ENST00000416417 OR10H5Q8NGA6 315 aa10.13□□□□□ -0.79
USP4-204ENST00000416417 NANOS1Q8WY41 292 aaKnown RBP10.13□□□□□ -0.79
USP4-204ENST00000416417 AURKBQ96GD4 344 aaPredicted RBP10.13□□□□□ -0.79
USP4-204ENST00000416417 NAA11Q9BSU3 229 aaPredicted RBP10.13□□□□□ -0.79
USP4-204ENST00000416417 MTHFD2LQ9H903 347 aaPredicted RBP10.13□□□□□ -0.79
USP4-204ENST00000416417 SSU72Q9NP77 194 aaKnown RBP10.13□□□□□ -0.79
USP4-204ENST00000416417 MOKQ9UQ07 419 aa10.13□□□□□ -0.79
USP4-204ENST00000416417 MGAT4BQ9UQ53 548 aa10.13□□□□□ -0.79
USP4-204ENST00000416417 SLC9A8Q9Y2E8 581 aa10.13□□□□□ -0.79
USP4-204ENST00000416417 FBN3Q75N90 2809 aa10.13□□□□□ -0.79
USP4-204ENST00000416417 RNF212BA8MTL3 300 aa10.12□□□□□ -0.79
USP4-204ENST00000416417 A8MV72 311 aaPredicted RBP10.12□□□□□ -0.79
USP4-204ENST00000416417 RFXANKO14593 260 aa10.12□□□□□ -0.79
USP4-204ENST00000416417 DNPH1O43598 174 aa10.12□□□□□ -0.79
USP4-204ENST00000416417 BCHEP06276 602 aa10.12□□□□□ -0.79
USP4-204ENST00000416417 CXCR1P25024 350 aa10.12□□□□□ -0.79
USP4-204ENST00000416417 ACAA2P42765 397 aaKnown RBP10.12□□□□□ -0.79
USP4-204ENST00000416417 HTR3AP46098 478 aa10.12□□□□□ -0.79
USP4-204ENST00000416417 CLK1P49759 484 aaKnown RBP10.12□□□□□ -0.79
USP4-204ENST00000416417 MVDP53602 400 aa10.12□□□□□ -0.79
USP4-204ENST00000416417 TUBA1BP68363 451 aa10.12□□□□□ -0.79
USP4-204ENST00000416417 TUBA4AP68366 448 aa10.12□□□□□ -0.79
USP4-204ENST00000416417 NRF1Q16656 503 aa10.12□□□□□ -0.79
USP4-204ENST00000416417 OR7E24Q6IFN5 339 aa10.12□□□□□ -0.79
USP4-204ENST00000416417 CLEC2AQ6UVW9 174 aa10.12□□□□□ -0.79
USP4-204ENST00000416417 TUBA1AQ71U36 451 aa10.12□□□□□ -0.79
USP4-204ENST00000416417 AAED1Q7RTV5 226 aa10.12□□□□□ -0.79
USP4-204ENST00000416417 SPATA19Q7Z5L4 167 aa10.12□□□□□ -0.79
USP4-204ENST00000416417 CMIPQ8IY22 773 aa10.12□□□□□ -0.79
USP4-204ENST00000416417 TRIML2Q8N7C3 387 aa10.12□□□□□ -0.79
USP4-204ENST00000416417 OR9K2Q8NGE7 335 aa10.12□□□□□ -0.79
USP4-204ENST00000416417 OR52P1PQ8NH57 321 aa10.12□□□□□ -0.79
USP4-204ENST00000416417 GRIP2Q9C0E4 1043 aa10.12□□□□□ -0.79
USP4-204ENST00000416417 ADAM19Q9H013 955 aa10.12□□□□□ -0.79
USP4-204ENST00000416417 ADPRHL2Q9NX46 363 aa10.12□□□□□ -0.79
USP4-204ENST00000416417 LIPT2A6NK58 231 aa10.12□□□□□ -0.79
USP4-204ENST00000416417 NR5A2O00482 541 aa10.12□□□□□ -0.79
USP4-204ENST00000416417 ZNF208O43345 1280 aa10.12□□□□□ -0.79
USP4-204ENST00000416417 FRS3O43559 492 aa10.12□□□□□ -0.79
USP4-204ENST00000416417 TLX2O43763 284 aaPredicted RBP10.12□□□□□ -0.79
USP4-204ENST00000416417 EIF1BO60739 113 aaKnown RBP10.12□□□□□ -0.79
USP4-204ENST00000416417 LGI1O95970 557 aa10.12□□□□□ -0.79
USP4-204ENST00000416417 DBIP07108 87 aaKnown RBP10.12□□□□□ -0.79
USP4-204ENST00000416417 CRATP43155 626 aa10.12□□□□□ -0.79
USP4-204ENST00000416417 TMEM249Q2WGJ8 235 aa10.12□□□□□ -0.79
USP4-204ENST00000416417 SLC9B1Q4ZJI4 515 aa10.12□□□□□ -0.79
USP4-204ENST00000416417 TNFAIP8L3Q5GJ75 292 aa10.12□□□□□ -0.79
USP4-204ENST00000416417 C6orf52Q5T4I8 152 aa10.12□□□□□ -0.79
USP4-204ENST00000416417 PAQR6Q6TCH4 344 aa10.12□□□□□ -0.79
USP4-204ENST00000416417 LINGO2Q7L985 606 aa10.12□□□□□ -0.79
USP4-204ENST00000416417 HIPK1Q86Z02 1210 aa10.12□□□□□ -0.79
USP4-204ENST00000416417 PEX5LQ8IYB4 626 aa10.12□□□□□ -0.79
USP4-204ENST00000416417 DEPDC4Q8N2C3 294 aa10.12□□□□□ -0.79
USP4-204ENST00000416417 KDM8Q8N371 416 aa10.12□□□□□ -0.79
USP4-204ENST00000416417 OIT3Q8WWZ8 545 aa10.12□□□□□ -0.79
USP4-204ENST00000416417 PMM1Q92871 262 aa10.12□□□□□ -0.79
USP4-204ENST00000416417 VPS33AQ96AX1 596 aa10.12□□□□□ -0.79
USP4-204ENST00000416417 FBXO17Q96EF6 278 aa10.12□□□□□ -0.79
USP4-204ENST00000416417 ZBTB18Q99592 522 aa10.12□□□□□ -0.79
USP4-204ENST00000416417 AMBRA1Q9C0C7 1298 aa10.12□□□□□ -0.79
USP4-204ENST00000416417 SEC61A2Q9H9S3 476 aa10.12□□□□□ -0.79
USP4-204ENST00000416417 PARPBPQ9NWS1 579 aa10.12□□□□□ -0.79
USP4-204ENST00000416417 DCTN4Q9UJW0 460 aa10.12□□□□□ -0.79
USP4-204ENST00000416417 ZNF443Q9Y2A4 671 aaPredicted RBP10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms