RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 TTYH2Q9BSA4 534 aa6.27□□□□□ -1.41
LIMA1-202ENST00000394943 YY1AP1Q9H869 796 aa6.27□□□□□ -1.41
LIMA1-202ENST00000394943 NMNAT1Q9HAN9 279 aaPredicted RBP6.27□□□□□ -1.41
LIMA1-202ENST00000394943 CACYBPQ9HB71 228 aaKnown RBP6.27□□□□□ -1.41
LIMA1-202ENST00000394943 EGFL7Q9UHF1 273 aa6.27□□□□□ -1.41
LIMA1-202ENST00000394943 FOXD3Q9UJU5 478 aaPredicted RBP6.27□□□□□ -1.41
LIMA1-202ENST00000394943 KLF2Q9Y5W3 355 aaPredicted RBP6.27□□□□□ -1.41
LIMA1-202ENST00000394943 A0A087WUU8 490 aa6.27□□□□□ -1.41
LIMA1-202ENST00000394943 H0YJX3 145 aa6.27□□□□□ -1.41
LIMA1-202ENST00000394943 PLPP3O14495 311 aa6.27□□□□□ -1.41
LIMA1-202ENST00000394943 SLC19A2O60779 497 aa6.27□□□□□ -1.41
LIMA1-202ENST00000394943 GKN3PP0CG01 181 aa6.27□□□□□ -1.41
LIMA1-202ENST00000394943 FXYD6P3P58550 94 aa6.27□□□□□ -1.41
LIMA1-202ENST00000394943 SF3A3Q12874 501 aaKnown RBP eCLIP6.27□□□□□ -1.41
LIMA1-202ENST00000394943 WLSQ5T9L3 541 aa6.27□□□□□ -1.41
LIMA1-202ENST00000394943 SSX8Q7RTT4 187 aa6.27□□□□□ -1.41
LIMA1-202ENST00000394943 FAM122BQ7Z309 247 aa6.27□□□□□ -1.41
LIMA1-202ENST00000394943 SMYD1Q8NB12 490 aa6.27□□□□□ -1.41
LIMA1-202ENST00000394943 PIGXQ8TBF5 258 aa6.27□□□□□ -1.41
LIMA1-202ENST00000394943 TMEM54Q969K7 222 aa6.27□□□□□ -1.41
LIMA1-202ENST00000394943 TAAR8Q969N4 342 aa6.27□□□□□ -1.41
LIMA1-202ENST00000394943 ADAD1Q96M93 576 aaKnown RBP6.27□□□□□ -1.41
LIMA1-202ENST00000394943 PRM3Q9NNZ6 103 aa6.27□□□□□ -1.41
LIMA1-202ENST00000394943 VNN3Q9NY84 501 aa6.27□□□□□ -1.41
LIMA1-202ENST00000394943 REV1Q9UBZ9 1251 aa6.27□□□□□ -1.41
LIMA1-202ENST00000394943 SLC6A5Q9Y345 797 aa6.27□□□□□ -1.41
LIMA1-202ENST00000394943 FAM166BA8MTA8 275 aa6.26□□□□□ -1.41
LIMA1-202ENST00000394943 GSTA4O15217 222 aa6.26□□□□□ -1.41
LIMA1-202ENST00000394943 HPRP00739 348 aa6.26□□□□□ -1.41
LIMA1-202ENST00000394943 COX5AP20674 150 aa6.26□□□□□ -1.41
LIMA1-202ENST00000394943 MASP1P48740 699 aa6.26□□□□□ -1.41
LIMA1-202ENST00000394943 MYBPHQ13203 477 aa6.26□□□□□ -1.41
LIMA1-202ENST00000394943 MICAQ29983 383 aa6.26□□□□□ -1.41
LIMA1-202ENST00000394943 ALG10BQ5I7T1 473 aa6.26□□□□□ -1.41
LIMA1-202ENST00000394943 OR2T5Q6IEZ7 315 aa6.26□□□□□ -1.41
LIMA1-202ENST00000394943 CYP4Z1Q86W10 505 aa6.26□□□□□ -1.41
LIMA1-202ENST00000394943 ATCAYQ86WG3 371 aa6.26□□□□□ -1.41
LIMA1-202ENST00000394943 ZDHHC21Q8IVQ6 265 aa6.26□□□□□ -1.41
LIMA1-202ENST00000394943 SVOPLQ8N434 492 aa6.26□□□□□ -1.41
LIMA1-202ENST00000394943 OR5M3Q8NGP4 307 aa6.26□□□□□ -1.41
LIMA1-202ENST00000394943 OR6K3Q8NGY3 331 aa6.26□□□□□ -1.41
LIMA1-202ENST00000394943 OR2T29Q8NH02 315 aa6.26□□□□□ -1.41
LIMA1-202ENST00000394943 ZNF519Q8TB69 540 aa6.26□□□□□ -1.41
LIMA1-202ENST00000394943 TMEM239Q8WW34 195 aa6.26□□□□□ -1.41
LIMA1-202ENST00000394943 WACQ9BTA9 647 aa6.26□□□□□ -1.41
LIMA1-202ENST00000394943 DENND2DQ9H6A0 471 aaPredicted RBP6.26□□□□□ -1.41
LIMA1-202ENST00000394943 PNPLA3Q9NST1 481 aa6.26□□□□□ -1.41
LIMA1-202ENST00000394943 TAS2R5Q9NYW4 299 aa6.26□□□□□ -1.41
LIMA1-202ENST00000394943 C2orf72A6NCS6 295 aa6.26□□□□□ -1.41
LIMA1-202ENST00000394943 CLCA1A8K7I4 914 aa6.26□□□□□ -1.41
LIMA1-202ENST00000394943 HSPB2A8KAH6 182 aa6.26□□□□□ -1.41
LIMA1-202ENST00000394943 PDE5AO76074 875 aa6.26□□□□□ -1.41
LIMA1-202ENST00000394943 LDLRP01130 860 aa6.26□□□□□ -1.41
LIMA1-202ENST00000394943 OPN1SWP03999 348 aa6.26□□□□□ -1.41
LIMA1-202ENST00000394943 ZNF26P17031 533 aaPredicted RBP6.26□□□□□ -1.41
LIMA1-202ENST00000394943 ACVR2AP27037 513 aa6.26□□□□□ -1.41
LIMA1-202ENST00000394943 CLDN20P56880 219 aa6.26□□□□□ -1.41
LIMA1-202ENST00000394943 RPS3AP61247 264 aaKnown RBP6.26□□□□□ -1.41
LIMA1-202ENST00000394943 TLE1Q04724 770 aa6.26□□□□□ -1.41
LIMA1-202ENST00000394943 COX10Q12887 443 aa6.26□□□□□ -1.41
LIMA1-202ENST00000394943 HSPB2Q16082 182 aa6.26□□□□□ -1.41
LIMA1-202ENST00000394943 FAM205BPQ63HN1 556 aa6.26□□□□□ -1.41
LIMA1-202ENST00000394943 YRDCQ86U90 279 aaKnown RBP6.26□□□□□ -1.41
LIMA1-202ENST00000394943 TMEM123Q8N131 208 aa6.26□□□□□ -1.41
LIMA1-202ENST00000394943 LILRA2Q8N149 483 aa6.26□□□□□ -1.41
LIMA1-202ENST00000394943 FAM169BQ8N8A8 192 aa6.26□□□□□ -1.41
LIMA1-202ENST00000394943 OR10D3Q8NH80 312 aa6.26□□□□□ -1.41
LIMA1-202ENST00000394943 OR14L1PQ8NHC6 308 aa6.26□□□□□ -1.41
LIMA1-202ENST00000394943 SLC7A13Q8TCU3 470 aa6.26□□□□□ -1.41
LIMA1-202ENST00000394943 GABARAPL3Q9BY60 117 aa6.26□□□□□ -1.41
LIMA1-202ENST00000394943 MRPL13Q9BYD1 178 aaKnown RBP6.26□□□□□ -1.41
LIMA1-202ENST00000394943 SLC25A19Q9HC21 320 aa6.26□□□□□ -1.41
LIMA1-202ENST00000394943 SLC7A7Q9UM01 511 aa6.26□□□□□ -1.41
LIMA1-202ENST00000394943 IDH3BO43837 385 aa6.26□□□□□ -1.41
LIMA1-202ENST00000394943 F10P00742 488 aa6.26□□□□□ -1.41
LIMA1-202ENST00000394943 H1F0P07305 194 aaKnown RBP6.26□□□□□ -1.41
LIMA1-202ENST00000394943 POU3F2P20265 443 aaPredicted RBP6.26□□□□□ -1.41
LIMA1-202ENST00000394943 FPR1P21462 350 aa6.26□□□□□ -1.41
LIMA1-202ENST00000394943 DIO1P49895 249 aa6.26□□□□□ -1.41
LIMA1-202ENST00000394943 SORDQ00796 357 aa6.26□□□□□ -1.41
LIMA1-202ENST00000394943 NFATC3Q12968 1075 aa6.26□□□□□ -1.41
LIMA1-202ENST00000394943 TSPAN31Q12999 210 aa6.26□□□□□ -1.41
LIMA1-202ENST00000394943 FLOT2Q14254 428 aa6.26□□□□□ -1.41
LIMA1-202ENST00000394943 SEC23BQ15437 767 aa6.26□□□□□ -1.41
LIMA1-202ENST00000394943 C3AR1Q16581 482 aa6.26□□□□□ -1.41
LIMA1-202ENST00000394943 SLC25A35Q3KQZ1 300 aa6.26□□□□□ -1.41
LIMA1-202ENST00000394943 SLC25A30Q5SVS4 291 aa6.26□□□□□ -1.41
LIMA1-202ENST00000394943 RPL13AP3Q6NVV1 102 aa6.26□□□□□ -1.41
LIMA1-202ENST00000394943 PGBD2Q6P3X8 592 aa6.26□□□□□ -1.41
LIMA1-202ENST00000394943 RASSF6Q6ZTQ3 369 aa6.26□□□□□ -1.41
LIMA1-202ENST00000394943 PXKQ7Z7A4 578 aa6.26□□□□□ -1.41
LIMA1-202ENST00000394943 NKAIN4Q8IVV8 208 aa6.26□□□□□ -1.41
LIMA1-202ENST00000394943 CANT1Q8WVQ1 401 aa6.26□□□□□ -1.41
LIMA1-202ENST00000394943 SFXN2Q96NB2 322 aa6.26□□□□□ -1.41
LIMA1-202ENST00000394943 USB1Q9BQ65 265 aaKnown RBP6.26□□□□□ -1.41
LIMA1-202ENST00000394943 SMURF2Q9HAU4 748 aa6.26□□□□□ -1.41
LIMA1-202ENST00000394943 S100A14Q9HCY8 104 aa6.26□□□□□ -1.41
LIMA1-202ENST00000394943 TIGARQ9NQ88 270 aa6.26□□□□□ -1.41
LIMA1-202ENST00000394943 IL20Q9NYY1 176 aa6.26□□□□□ -1.41
LIMA1-202ENST00000394943 CRNNQ9UBG3 495 aaPredicted RBP6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms