RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 THY1P04216 161 aa9.29□□□□□ -0.92
VPS53-202ENST00000389040 P04436 131 aa9.29□□□□□ -0.92
VPS53-202ENST00000389040 NGFRP08138 427 aa9.29□□□□□ -0.92
VPS53-202ENST00000389040 HSMCR30P0CW71 290 aa9.29□□□□□ -0.92
VPS53-202ENST00000389040 DBTP11182 482 aaKnown RBP9.29□□□□□ -0.92
VPS53-202ENST00000389040 NID1P14543 1247 aa9.29□□□□□ -0.92
VPS53-202ENST00000389040 ENDOUP21128 410 aaKnown RBP9.29□□□□□ -0.92
VPS53-202ENST00000389040 CNR1P21554 472 aa9.29□□□□□ -0.92
VPS53-202ENST00000389040 NME2P22392 152 aa9.29□□□□□ -0.92
VPS53-202ENST00000389040 FPR3P25089 353 aa9.29□□□□□ -0.92
VPS53-202ENST00000389040 IL12BP29460 328 aa9.29□□□□□ -0.92
VPS53-202ENST00000389040 GABRA3P34903 492 aa9.29□□□□□ -0.92
VPS53-202ENST00000389040 RGS6P49758 472 aa9.29□□□□□ -0.92
VPS53-202ENST00000389040 CLK1P49759 484 aaKnown RBP9.29□□□□□ -0.92
VPS53-202ENST00000389040 ZNF91Q05481 1191 aa9.29□□□□□ -0.92
VPS53-202ENST00000389040 LY6DQ14210 128 aa9.29□□□□□ -0.92
VPS53-202ENST00000389040 MED22Q15528 200 aa9.29□□□□□ -0.92
VPS53-202ENST00000389040 MAPK14Q16539 360 aa9.29□□□□□ -0.92
VPS53-202ENST00000389040 ZNF766Q5HY98 468 aa9.29□□□□□ -0.92
VPS53-202ENST00000389040 SLC6A19Q695T7 634 aa9.29□□□□□ -0.92
VPS53-202ENST00000389040 ACSM5Q6NUN0 579 aa9.29□□□□□ -0.92
VPS53-202ENST00000389040 SLC27A4Q6P1M0 643 aa9.29□□□□□ -0.92
VPS53-202ENST00000389040 IL20RBQ6UXL0 311 aa9.29□□□□□ -0.92
VPS53-202ENST00000389040 RASSF6Q6ZTQ3 369 aa9.29□□□□□ -0.92
VPS53-202ENST00000389040 MBOAT2Q6ZWT7 520 aa9.29□□□□□ -0.92
VPS53-202ENST00000389040 NKAIN4Q8IVV8 208 aa9.29□□□□□ -0.92
VPS53-202ENST00000389040 FAM26EQ8N5C1 309 aa9.29□□□□□ -0.92
VPS53-202ENST00000389040 PSD4Q8NDX1 1056 aa9.29□□□□□ -0.92
VPS53-202ENST00000389040 OMA1Q96E52 524 aa9.29□□□□□ -0.92
VPS53-202ENST00000389040 ZHX1-C8orf76Q96EF9 292 aa9.29□□□□□ -0.92
VPS53-202ENST00000389040 OR5M11Q96RB7 305 aa9.29□□□□□ -0.92
VPS53-202ENST00000389040 TSSK6Q9BXA6 273 aa9.29□□□□□ -0.92
VPS53-202ENST00000389040 POLR2J2Q9GZM3 115 aaKnown RBP9.29□□□□□ -0.92
VPS53-202ENST00000389040 PALMDQ9NP74 551 aa9.29□□□□□ -0.92
VPS53-202ENST00000389040 SACM1LQ9NTJ5 587 aa9.29□□□□□ -0.92
VPS53-202ENST00000389040 OSGIN1Q9UJX0 560 aa9.29□□□□□ -0.92
VPS53-202ENST00000389040 SCN2AQ99250 2005 aa9.28□□□□□ -0.92
VPS53-202ENST00000389040 ATMQ13315 3056 aa9.28□□□□□ -0.92
VPS53-202ENST00000389040 CDHR4A6H8M9 788 aa9.28□□□□□ -0.92
VPS53-202ENST00000389040 TSPAN2O60636 221 aa9.28□□□□□ -0.92
VPS53-202ENST00000389040 CRYABP02511 175 aaKnown RBP9.28□□□□□ -0.92
VPS53-202ENST00000389040 TGFBR1P36897 503 aa9.28□□□□□ -0.92
VPS53-202ENST00000389040 OPRL1P41146 370 aa9.28□□□□□ -0.92
VPS53-202ENST00000389040 ZNF136P52737 540 aa9.28□□□□□ -0.92
VPS53-202ENST00000389040 POU6F2P78424 691 aaPredicted RBP9.28□□□□□ -0.92
VPS53-202ENST00000389040 EFNB1P98172 346 aa9.28□□□□□ -0.92
VPS53-202ENST00000389040 SNAPC1Q16533 368 aa9.28□□□□□ -0.92
VPS53-202ENST00000389040 C11orf91Q3C1V1 193 aa9.28□□□□□ -0.92
VPS53-202ENST00000389040 ANKDD1AQ495B1 522 aa9.28□□□□□ -0.92
VPS53-202ENST00000389040 SYT14P1Q58G82 188 aa9.28□□□□□ -0.92
VPS53-202ENST00000389040 MRPL2Q5T653 305 aaKnown RBP9.28□□□□□ -0.92
VPS53-202ENST00000389040 ZNF468Q5VIY5 522 aaPredicted RBP9.28□□□□□ -0.92
VPS53-202ENST00000389040 RNLSQ5VYX0 342 aa9.28□□□□□ -0.92
VPS53-202ENST00000389040 SPINK14Q6IE38 97 aa9.28□□□□□ -0.92
VPS53-202ENST00000389040 SLC30A6Q6NXT4 461 aa9.28□□□□□ -0.92
VPS53-202ENST00000389040 C16orf87Q6PH81 154 aa9.28□□□□□ -0.92
VPS53-202ENST00000389040 FIGNL1Q6PIW4 674 aa9.28□□□□□ -0.92
VPS53-202ENST00000389040 NPSR1Q6W5P4 371 aa9.28□□□□□ -0.92
VPS53-202ENST00000389040 BCDIN3DQ7Z5W3 292 aaKnown RBP9.28□□□□□ -0.92
VPS53-202ENST00000389040 ADCK1Q86TW2 530 aa9.28□□□□□ -0.92
VPS53-202ENST00000389040 NRMQ8IXM6 262 aa9.28□□□□□ -0.92
VPS53-202ENST00000389040 FNDC8Q8TC99 324 aa9.28□□□□□ -0.92
VPS53-202ENST00000389040 TMEM255BQ8WV15 326 aa9.28□□□□□ -0.92
VPS53-202ENST00000389040 SH3YL1Q96HL8 342 aaPredicted RBP9.28□□□□□ -0.92
VPS53-202ENST00000389040 PLEKHA8Q96JA3 519 aa9.28□□□□□ -0.92
VPS53-202ENST00000389040 LRR1Q96L50 414 aa9.28□□□□□ -0.92
VPS53-202ENST00000389040 DCSTAMPQ9H295 470 aa9.28□□□□□ -0.92
VPS53-202ENST00000389040 DSN1Q9H410 356 aa9.28□□□□□ -0.92
VPS53-202ENST00000389040 FBXO34Q9NWN3 711 aa9.28□□□□□ -0.92
VPS53-202ENST00000389040 PLA2G3Q9NZ20 509 aa9.28□□□□□ -0.92
VPS53-202ENST00000389040 KCNE5Q9UJ90 142 aa9.28□□□□□ -0.92
VPS53-202ENST00000389040 SLC7A7Q9UM01 511 aa9.28□□□□□ -0.92
VPS53-202ENST00000389040 CHCHD2Q9Y6H1 151 aaPredicted RBP9.28□□□□□ -0.92
VPS53-202ENST00000389040 PMF1-BGLAPU3KQ54 211 aa9.28□□□□□ -0.92
VPS53-202ENST00000389040 NPIPA5A0A0B4J1W7 369 aa9.27□□□□□ -0.93
VPS53-202ENST00000389040 GXYLT2A0PJZ3 443 aa9.27□□□□□ -0.93
VPS53-202ENST00000389040 NPIPA7E9PJI5 369 aa9.27□□□□□ -0.93
VPS53-202ENST00000389040 KLF4O43474 513 aa9.27□□□□□ -0.93
VPS53-202ENST00000389040 REM1O75628 298 aa9.27□□□□□ -0.93
VPS53-202ENST00000389040 NPIPA8P0DM63 369 aa9.27□□□□□ -0.93
VPS53-202ENST00000389040 GRK5P34947 590 aa9.27□□□□□ -0.93
VPS53-202ENST00000389040 UGT2B10P36537 528 aa9.27□□□□□ -0.93
VPS53-202ENST00000389040 TUBA1BP68363 451 aa9.27□□□□□ -0.93
VPS53-202ENST00000389040 PLEKHN1Q494U1 663 aaPredicted RBP9.27□□□□□ -0.93
VPS53-202ENST00000389040 C16orf47Q6ZP98 133 aaPredicted RBP9.27□□□□□ -0.93
VPS53-202ENST00000389040 TUBA1AQ71U36 451 aa9.27□□□□□ -0.93
VPS53-202ENST00000389040 ZNF227Q86WZ6 799 aa9.27□□□□□ -0.93
VPS53-202ENST00000389040 BCORP1Q8N888 145 aa9.27□□□□□ -0.93
VPS53-202ENST00000389040 OR8D4Q8NGM9 314 aa9.27□□□□□ -0.93
VPS53-202ENST00000389040 TMEM163Q8TC26 289 aa9.27□□□□□ -0.93
VPS53-202ENST00000389040 RNF138Q8WVD3 245 aa9.27□□□□□ -0.93
VPS53-202ENST00000389040 OSTF1Q92882 214 aa9.27□□□□□ -0.93
VPS53-202ENST00000389040 NTNG2Q96CW9 530 aa9.27□□□□□ -0.93
VPS53-202ENST00000389040 ZNF582Q96NG8 517 aaPredicted RBP9.27□□□□□ -0.93
VPS53-202ENST00000389040 SIGLEC12Q96PQ1 595 aa9.27□□□□□ -0.93
VPS53-202ENST00000389040 SLC38A2Q96QD8 506 aa9.27□□□□□ -0.93
VPS53-202ENST00000389040 MGLLQ99685 303 aa9.27□□□□□ -0.93
VPS53-202ENST00000389040 FAM173AQ9BQD7 235 aa9.27□□□□□ -0.93
VPS53-202ENST00000389040 ANGPTL4Q9BY76 406 aa9.27□□□□□ -0.93
VPS53-202ENST00000389040 PRRG3Q9BZD7 231 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms