RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 TMEM18Q96B42 140 aa10.91□□□□□ -0.66
VPS13A-205ENST00000376636 SALL4Q9UJQ4 1053 aa10.91□□□□□ -0.66
VPS13A-205ENST00000376636 ADAM23O75077 832 aa10.91□□□□□ -0.66
VPS13A-205ENST00000376636 TBX18O95935 607 aa10.91□□□□□ -0.66
VPS13A-205ENST00000376636 BIDP55957 195 aa10.91□□□□□ -0.66
VPS13A-205ENST00000376636 CDK5Q00535 292 aa10.91□□□□□ -0.66
VPS13A-205ENST00000376636 MTCH1Q9NZJ7 389 aa10.91□□□□□ -0.66
VPS13A-205ENST00000376636 VSX1Q9NZR4 365 aaPredicted RBP10.91□□□□□ -0.66
VPS13A-205ENST00000376636 TYROBPO43914 113 aa10.91□□□□□ -0.66
VPS13A-205ENST00000376636 TGM4P49221 684 aa10.91□□□□□ -0.66
VPS13A-205ENST00000376636 TP53I3Q53FA7 332 aa10.91□□□□□ -0.66
VPS13A-205ENST00000376636 TMEM97Q5BJF2 176 aa10.91□□□□□ -0.66
VPS13A-205ENST00000376636 IRF2BP1Q8IU81 584 aa10.91□□□□□ -0.66
VPS13A-205ENST00000376636 KLHDC8BQ8IXV7 354 aa10.91□□□□□ -0.66
VPS13A-205ENST00000376636 FBXL18Q96ME1 805 aa10.91□□□□□ -0.66
VPS13A-205ENST00000376636 DYNLRB1Q9NP97 96 aa10.91□□□□□ -0.66
VPS13A-205ENST00000376636 SPHK1Q9NYA1 384 aa10.91□□□□□ -0.66
VPS13A-205ENST00000376636 A0A1W2PQ09 198 aa10.91□□□□□ -0.66
VPS13A-205ENST00000376636 FEZF1A0PJY2 475 aa10.91□□□□□ -0.66
VPS13A-205ENST00000376636 ACP2P11117 423 aa10.91□□□□□ -0.66
VPS13A-205ENST00000376636 EID2Q8N6I1 236 aa10.91□□□□□ -0.66
VPS13A-205ENST00000376636 OR10Z1Q8NGY1 313 aa10.91□□□□□ -0.66
VPS13A-205ENST00000376636 ENSAO43768 121 aaKnown RBP10.91□□□□□ -0.66
VPS13A-205ENST00000376636 SPI1P17947 270 aa10.91□□□□□ -0.66
VPS13A-205ENST00000376636 ETV3P41162 512 aa10.91□□□□□ -0.66
VPS13A-205ENST00000376636 GALNT1Q10472 559 aaPredicted RBP10.91□□□□□ -0.66
VPS13A-205ENST00000376636 CDRT4Q8N9R6 151 aa10.91□□□□□ -0.66
VPS13A-205ENST00000376636 C1QTNF2Q9BXJ5 285 aa10.91□□□□□ -0.66
VPS13A-205ENST00000376636 METTL9Q9H1A3 318 aa10.91□□□□□ -0.66
VPS13A-205ENST00000376636 GNG12Q9UBI6 72 aa10.91□□□□□ -0.66
VPS13A-205ENST00000376636 GRM2Q14416 872 aa10.91□□□□□ -0.66
VPS13A-205ENST00000376636 LYPD4Q6UWN0 246 aa10.91□□□□□ -0.66
VPS13A-205ENST00000376636 KLHDC8AQ8IYD2 350 aa10.91□□□□□ -0.66
VPS13A-205ENST00000376636 CD200R1Q8TD46 325 aa10.91□□□□□ -0.66
VPS13A-205ENST00000376636 CNIH4Q9P003 139 aa10.91□□□□□ -0.66
VPS13A-205ENST00000376636 B3GAT1Q9P2W7 334 aa10.91□□□□□ -0.66
VPS13A-205ENST00000376636 YIPF1Q9Y548 306 aa10.91□□□□□ -0.66
VPS13A-205ENST00000376636 OTX2P32243 289 aa10.91□□□□□ -0.66
VPS13A-205ENST00000376636 ZNF239Q16600 458 aaKnown RBP10.91□□□□□ -0.66
VPS13A-205ENST00000376636 TRAPPC2LQ9UL33 140 aa10.91□□□□□ -0.66
VPS13A-205ENST00000376636 KPTNQ9Y664 436 aa10.91□□□□□ -0.66
VPS13A-205ENST00000376636 ENDOGQ14249 297 aaKnown RBP10.91□□□□□ -0.66
VPS13A-205ENST00000376636 ZNF620Q6ZNG0 422 aa10.91□□□□□ -0.66
VPS13A-205ENST00000376636 SLC25A21Q9BQT8 299 aaPredicted RBP10.91□□□□□ -0.66
VPS13A-205ENST00000376636 ZNF318Q5VUA4 2279 aa10.91□□□□□ -0.66
VPS13A-205ENST00000376636 H7BYZ3 331 aa10.9□□□□□ -0.66
VPS13A-205ENST00000376636 GSTP1P09211 210 aaKnown RBP10.9□□□□□ -0.66
VPS13A-205ENST00000376636 DMWDQ09019 674 aa10.9□□□□□ -0.66
VPS13A-205ENST00000376636 P2RY14Q15391 338 aa10.9□□□□□ -0.66
VPS13A-205ENST00000376636 RPL22L1Q6P5R6 122 aaKnown RBP10.9□□□□□ -0.66
VPS13A-205ENST00000376636 SLC5A8Q8N695 610 aa10.9□□□□□ -0.66
VPS13A-205ENST00000376636 MRPL19P49406 292 aaKnown RBP10.9□□□□□ -0.66
VPS13A-205ENST00000376636 KIAA0141Q14154 515 aaPredicted RBP10.9□□□□□ -0.66
VPS13A-205ENST00000376636 NKAIN3Q8N8D7 197 aa10.9□□□□□ -0.66
VPS13A-205ENST00000376636 MUCL1Q96DR8 90 aa10.9□□□□□ -0.66
VPS13A-205ENST00000376636 SH3BGRL2Q9UJC5 107 aa10.9□□□□□ -0.66
VPS13A-205ENST00000376636 PRICKLE3O43900 615 aaPredicted RBP10.9□□□□□ -0.66
VPS13A-205ENST00000376636 FOXD2O60548 495 aaPredicted RBP10.9□□□□□ -0.66
VPS13A-205ENST00000376636 BAK1Q16611 211 aa10.9□□□□□ -0.66
VPS13A-205ENST00000376636 COL13A1Q5TAT6 717 aaPredicted RBP10.9□□□□□ -0.66
VPS13A-205ENST00000376636 NADSYN1Q6IA69 706 aa10.9□□□□□ -0.66
VPS13A-205ENST00000376636 TMEM217Q8N7C4 229 aa10.9□□□□□ -0.66
VPS13A-205ENST00000376636 OR1J2Q8NGS2 313 aa10.9□□□□□ -0.66
VPS13A-205ENST00000376636 NMNAT1Q9HAN9 279 aaPredicted RBP10.9□□□□□ -0.66
VPS13A-205ENST00000376636 FAM198AQ9UFP1 575 aa10.9□□□□□ -0.66
VPS13A-205ENST00000376636 KCTD11Q693B1 232 aa10.9□□□□□ -0.66
VPS13A-205ENST00000376636 CMTM8Q8IZV2 173 aa10.9□□□□□ -0.66
VPS13A-205ENST00000376636 OR5B3Q8NH48 314 aa10.9□□□□□ -0.66
VPS13A-205ENST00000376636 TMEM239Q8WW34 195 aa10.9□□□□□ -0.66
VPS13A-205ENST00000376636 L3HYPDHQ96EM0 354 aa10.9□□□□□ -0.66
VPS13A-205ENST00000376636 NTPCRQ9BSD7 190 aaKnown RBP10.9□□□□□ -0.66
VPS13A-205ENST00000376636 PHRF1Q9P1Y6 1649 aaKnown RBP10.9□□□□□ -0.66
VPS13A-205ENST00000376636 LALBAP00709 142 aa10.9□□□□□ -0.66
VPS13A-205ENST00000376636 VEZF1Q14119 521 aa10.9□□□□□ -0.66
VPS13A-205ENST00000376636 STK11Q15831 433 aa10.9□□□□□ -0.66
VPS13A-205ENST00000376636 RPS27LQ71UM5 84 aaKnown RBP10.9□□□□□ -0.66
VPS13A-205ENST00000376636 SFT2D1Q8WV19 159 aa10.9□□□□□ -0.66
VPS13A-205ENST00000376636 SLC41A2Q96JW4 573 aa10.9□□□□□ -0.66
VPS13A-205ENST00000376636 ABHD6Q9BV23 337 aa10.9□□□□□ -0.66
VPS13A-205ENST00000376636 B4GALT6Q9UBX8 382 aa10.9□□□□□ -0.66
VPS13A-205ENST00000376636 CA12O43570 354 aa10.9□□□□□ -0.66
VPS13A-205ENST00000376636 FOLR3P41439 243 aa10.9□□□□□ -0.66
VPS13A-205ENST00000376636 DUSP6Q16828 381 aa10.9□□□□□ -0.66
VPS13A-205ENST00000376636 PRICKLE2Q7Z3G6 844 aa10.9□□□□□ -0.66
VPS13A-205ENST00000376636 RNF175Q8N4F7 328 aa10.9□□□□□ -0.66
VPS13A-205ENST00000376636 BORCS6Q96GS4 357 aa10.9□□□□□ -0.66
VPS13A-205ENST00000376636 CLDND1Q9NY35 253 aa10.9□□□□□ -0.66
VPS13A-205ENST00000376636 RNF24Q9Y225 148 aa10.9□□□□□ -0.66
VPS13A-205ENST00000376636 ARG2P78540 354 aa10.9□□□□□ -0.66
VPS13A-205ENST00000376636 WBP2NLQ6ICG8 309 aa10.9□□□□□ -0.66
VPS13A-205ENST00000376636 NLGN4XQ8N0W4 816 aa10.9□□□□□ -0.66
VPS13A-205ENST00000376636 NECAP2Q9NVZ3 263 aa10.9□□□□□ -0.66
VPS13A-205ENST00000376636 TMEM200CA6NKL6 621 aa10.9□□□□□ -0.67
VPS13A-205ENST00000376636 LEFTY1O75610 366 aa10.9□□□□□ -0.67
VPS13A-205ENST00000376636 CLINT1Q14677 625 aa10.9□□□□□ -0.67
VPS13A-205ENST00000376636 OR13C5Q8NGS8 318 aa10.9□□□□□ -0.67
VPS13A-205ENST00000376636 OR13C2Q8NGS9 318 aa10.9□□□□□ -0.67
VPS13A-205ENST00000376636 ANGPTL6Q8NI99 470 aa10.9□□□□□ -0.67
VPS13A-205ENST00000376636 CCNL2Q96S94 520 aaPredicted RBP10.9□□□□□ -0.67
VPS13A-205ENST00000376636 ETV4P43268 484 aa10.9□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms