RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 NCLNQ969V3 563 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 MSANTD3Q96H12 275 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 SERINC2Q96SA4 455 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 PHF7Q9BWX1 381 aaPredicted RBP2.09□□□□□ -2.07
VPS54-202ENST00000354504 PCBD2Q9H0N5 130 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 OR51E2Q9H255 320 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 PIGUQ9H490 435 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 C8orf33Q9H7E9 229 aaPredicted RBP2.09□□□□□ -2.07
VPS54-202ENST00000354504 ERVMER34-1Q9H9K5 563 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 ISG20L2Q9H9L3 353 aaKnown RBP2.09□□□□□ -2.07
VPS54-202ENST00000354504 DUSP22Q9NRW4 184 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 STARD5Q9NSY2 213 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 HAO2Q9NYQ3 351 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 CCDC59Q9P031 241 aaKnown RBP2.09□□□□□ -2.07
VPS54-202ENST00000354504 NDUFA13Q9P0J0 144 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 PTGFRNQ9P2B2 879 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 PSME2Q9UL46 239 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 ASF1AQ9Y294 204 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 IFT52Q9Y366 437 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 RNF215Q9Y6U7 377 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 MED13Q9UHV7 2174 aa2.09□□□□□ -2.08
VPS54-202ENST00000354504 HYKKA2RU49 373 aa2.09□□□□□ -2.08
VPS54-202ENST00000354504 GSAPA4D1B5 854 aa2.09□□□□□ -2.08
VPS54-202ENST00000354504 TBC1D3BA6NDS4 549 aa2.09□□□□□ -2.08
VPS54-202ENST00000354504 MBD3L4A6NDZ8 208 aaPredicted RBP2.09□□□□□ -2.08
VPS54-202ENST00000354504 MBD3L3A6NE82 208 aaPredicted RBP2.09□□□□□ -2.08
VPS54-202ENST00000354504 HMX3A6NHT5 357 aa2.09□□□□□ -2.08
VPS54-202ENST00000354504 PLA2G10O15496 165 aa2.09□□□□□ -2.08
VPS54-202ENST00000354504 OR1F1O43749 312 aa2.09□□□□□ -2.08
VPS54-202ENST00000354504 CLPXO76031 633 aa2.09□□□□□ -2.08
VPS54-202ENST00000354504 NCR1O76036 304 aa2.09□□□□□ -2.08
VPS54-202ENST00000354504 PDGFBP01127 241 aaPredicted RBP2.09□□□□□ -2.08
VPS54-202ENST00000354504 ANKRD34CP0C6C1 535 aa2.09□□□□□ -2.08
VPS54-202ENST00000354504 CD53P19397 219 aa2.09□□□□□ -2.08
VPS54-202ENST00000354504 AQP1P29972 269 aa2.09□□□□□ -2.08
VPS54-202ENST00000354504 MAT2AP31153 395 aaKnown RBP2.09□□□□□ -2.08
VPS54-202ENST00000354504 HPCAL1P37235 193 aa2.09□□□□□ -2.08
VPS54-202ENST00000354504 RXRGP48443 463 aa2.09□□□□□ -2.08
VPS54-202ENST00000354504 ZNF133P52736 654 aaPredicted RBP2.09□□□□□ -2.08
VPS54-202ENST00000354504 CDH12P55289 794 aa2.09□□□□□ -2.08
VPS54-202ENST00000354504 VBP1P61758 197 aa2.09□□□□□ -2.08
VPS54-202ENST00000354504 CYP4F2P78329 520 aa2.09□□□□□ -2.08
VPS54-202ENST00000354504 HOXC5Q00444 222 aa2.09□□□□□ -2.08
VPS54-202ENST00000354504 FABP5Q01469 135 aa2.09□□□□□ -2.08
VPS54-202ENST00000354504 NHLH2Q02577 135 aa2.09□□□□□ -2.08
VPS54-202ENST00000354504 GANABQ14697 944 aaKnown RBP2.09□□□□□ -2.08
VPS54-202ENST00000354504 MOGQ16653 247 aa2.09□□□□□ -2.08
VPS54-202ENST00000354504 AASDHQ4L235 1098 aaPredicted RBP2.09□□□□□ -2.08
VPS54-202ENST00000354504 IFI44LQ53G44 452 aa2.09□□□□□ -2.08
VPS54-202ENST00000354504 Q5BKY6 102 aa2.09□□□□□ -2.08
VPS54-202ENST00000354504 SLC25A53Q5H9E4 307 aa2.09□□□□□ -2.08
VPS54-202ENST00000354504 FAM46CQ5VWP2 391 aa2.09□□□□□ -2.08
VPS54-202ENST00000354504 SLC30A6Q6NXT4 461 aa2.09□□□□□ -2.08
VPS54-202ENST00000354504 ZNF621Q6ZSS3 439 aa2.09□□□□□ -2.08
VPS54-202ENST00000354504 MBOAT2Q6ZWT7 520 aa2.09□□□□□ -2.08
VPS54-202ENST00000354504 KRT74Q7RTS7 529 aa2.09□□□□□ -2.08
VPS54-202ENST00000354504 DSG4Q86SJ6 1040 aa2.09□□□□□ -2.08
VPS54-202ENST00000354504 ADGRG3Q86Y34 549 aa2.09□□□□□ -2.08
VPS54-202ENST00000354504 SLC30A8Q8IWU4 369 aa2.09□□□□□ -2.08
VPS54-202ENST00000354504 ADHFE1Q8IWW8 467 aa2.09□□□□□ -2.08
VPS54-202ENST00000354504 LNX2Q8N448 690 aa2.09□□□□□ -2.08
VPS54-202ENST00000354504 IQCF1Q8N6M8 205 aa2.09□□□□□ -2.08
VPS54-202ENST00000354504 NATD1Q8N6N6 113 aa2.09□□□□□ -2.08
VPS54-202ENST00000354504 AVL9Q8NBF6 648 aa2.09□□□□□ -2.08
VPS54-202ENST00000354504 NPEPL1Q8NDH3 523 aa2.09□□□□□ -2.08
VPS54-202ENST00000354504 OR10G2Q8NGC3 310 aa2.09□□□□□ -2.08
VPS54-202ENST00000354504 ZNF519Q8TB69 540 aa2.09□□□□□ -2.08
VPS54-202ENST00000354504 SAP25Q8TEE9 199 aa2.09□□□□□ -2.08
VPS54-202ENST00000354504 ZDHHC19Q8WVZ1 309 aaPredicted RBP2.09□□□□□ -2.08
VPS54-202ENST00000354504 DNAJA4Q8WW22 397 aaPredicted RBP2.09□□□□□ -2.08
VPS54-202ENST00000354504 PIK3R3Q92569 461 aa2.09□□□□□ -2.08
VPS54-202ENST00000354504 SPSB4Q96A44 273 aa2.09□□□□□ -2.08
VPS54-202ENST00000354504 MRGPRFQ96AM1 343 aa2.09□□□□□ -2.08
VPS54-202ENST00000354504 SLC41A3Q96GZ6 507 aa2.09□□□□□ -2.08
VPS54-202ENST00000354504 GBP5Q96PP8 586 aa2.09□□□□□ -2.08
VPS54-202ENST00000354504 TRIB1Q96RU8 372 aa2.09□□□□□ -2.08
VPS54-202ENST00000354504 ZNF347Q96SE7 839 aa2.09□□□□□ -2.08
VPS54-202ENST00000354504 SH3GL1Q99961 368 aa2.09□□□□□ -2.08
VPS54-202ENST00000354504 MED18Q9BUE0 208 aa2.09□□□□□ -2.08
VPS54-202ENST00000354504 SPATA5L1Q9BVQ7 753 aa2.09□□□□□ -2.08
VPS54-202ENST00000354504 ACAT2Q9BWD1 397 aa2.09□□□□□ -2.08
VPS54-202ENST00000354504 ACTRT3Q9BYD9 372 aa2.09□□□□□ -2.08
VPS54-202ENST00000354504 POLR2J2Q9GZM3 115 aaKnown RBP2.09□□□□□ -2.08
VPS54-202ENST00000354504 POLR2J3Q9H1A7 115 aaKnown RBP2.09□□□□□ -2.08
VPS54-202ENST00000354504 UBE2ZQ9H832 354 aaPredicted RBP2.09□□□□□ -2.08
VPS54-202ENST00000354504 RMND5AQ9H871 391 aa2.09□□□□□ -2.08
VPS54-202ENST00000354504 AKIRIN1Q9H9L7 192 aaPredicted RBP2.09□□□□□ -2.08
VPS54-202ENST00000354504 MRPS30Q9NP92 439 aaKnown RBP2.09□□□□□ -2.08
VPS54-202ENST00000354504 SLCO1C1Q9NYB5 712 aa2.09□□□□□ -2.08
VPS54-202ENST00000354504 MOSPD1Q9UJG1 213 aa2.09□□□□□ -2.08
VPS54-202ENST00000354504 PILRBQ9UKJ0 227 aa2.09□□□□□ -2.08
VPS54-202ENST00000354504 POFUT2Q9Y2G5 429 aa2.09□□□□□ -2.08
VPS54-202ENST00000354504 KLHDC2Q9Y2U9 406 aa2.09□□□□□ -2.08
VPS54-202ENST00000354504 TESMINQ9Y4I5 508 aa2.09□□□□□ -2.08
VPS54-202ENST00000354504 CEP250Q9BV73 2442 aa2.09□□□□□ -2.08
VPS54-202ENST00000354504 CACNA1HO95180 2353 aa2.09□□□□□ -2.08
VPS54-202ENST00000354504 GTF3C1Q12789 2109 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 IGHV1OR21-1A0A087WYE8 117 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 A0A0J9YY10 115 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 TMEM129A0AVI4 362 aa2.08□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms