RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 GPR174Q9BXC1 333 aa13.07□□□□□ -0.32
CCDC88A-201ENST00000263630 HEYLQ9NQ87 328 aaPredicted RBP13.07□□□□□ -0.32
CCDC88A-201ENST00000263630 ENPP5Q9UJA9 477 aa13.07□□□□□ -0.32
CCDC88A-201ENST00000263630 CXorf49A8MYA2 514 aaPredicted RBP13.07□□□□□ -0.32
CCDC88A-201ENST00000263630 GPR25O00155 361 aa13.07□□□□□ -0.32
CCDC88A-201ENST00000263630 WDR4P57081 412 aaKnown RBP13.07□□□□□ -0.32
CCDC88A-201ENST00000263630 SLC35D2Q76EJ3 337 aa13.07□□□□□ -0.32
CCDC88A-201ENST00000263630 ARHGDIGQ99819 225 aa13.07□□□□□ -0.32
CCDC88A-201ENST00000263630 PIGMQ9H3S5 423 aa13.07□□□□□ -0.32
CCDC88A-201ENST00000263630 INIPQ9NRY2 104 aa13.07□□□□□ -0.32
CCDC88A-201ENST00000263630 E9PCH4 1651 aa13.06□□□□□ -0.32
CCDC88A-201ENST00000263630 NTF3P20783 257 aa13.06□□□□□ -0.32
CCDC88A-201ENST00000263630 RPS5P46782 204 aaKnown RBP13.06□□□□□ -0.32
CCDC88A-201ENST00000263630 ELAVL3Q14576 367 aaKnown RBP13.06□□□□□ -0.32
CCDC88A-201ENST00000263630 P2RY14Q15391 338 aa13.06□□□□□ -0.32
CCDC88A-201ENST00000263630 IL17AQ16552 155 aa13.06□□□□□ -0.32
CCDC88A-201ENST00000263630 GRINAQ7Z429 371 aa13.06□□□□□ -0.32
CCDC88A-201ENST00000263630 TMEM130Q8N3G9 435 aa13.06□□□□□ -0.32
CCDC88A-201ENST00000263630 TMEM18Q96B42 140 aa13.06□□□□□ -0.32
CCDC88A-201ENST00000263630 SLC6A20Q9NP91 592 aa13.06□□□□□ -0.32
CCDC88A-201ENST00000263630 LYRM2Q9NU23 88 aaPredicted RBP13.06□□□□□ -0.32
CCDC88A-201ENST00000263630 A0A1W2PQ09 198 aa13.06□□□□□ -0.32
CCDC88A-201ENST00000263630 FEZF1A0PJY2 475 aa13.06□□□□□ -0.32
CCDC88A-201ENST00000263630 KRBA1A5PL33 1030 aa13.06□□□□□ -0.32
CCDC88A-201ENST00000263630 PRICKLE3O43900 615 aaPredicted RBP13.06□□□□□ -0.32
CCDC88A-201ENST00000263630 CRB3Q9BUF7 120 aa13.06□□□□□ -0.32
CCDC88A-201ENST00000263630 SLC36A2Q495M3 483 aa13.06□□□□□ -0.32
CCDC88A-201ENST00000263630 LCN8Q6JVE9 175 aa13.06□□□□□ -0.32
CCDC88A-201ENST00000263630 ZNF322Q6U7Q0 402 aaPredicted RBP13.06□□□□□ -0.32
CCDC88A-201ENST00000263630 ZNF620Q6ZNG0 422 aa13.06□□□□□ -0.32
CCDC88A-201ENST00000263630 TMPRSS11FQ6ZWK6 438 aa13.06□□□□□ -0.32
CCDC88A-201ENST00000263630 CDRT4Q8N9R6 151 aa13.06□□□□□ -0.32
CCDC88A-201ENST00000263630 S1PR3Q99500 378 aa13.06□□□□□ -0.32
CCDC88A-201ENST00000263630 CALCRP30988 508 aa13.06□□□□□ -0.32
CCDC88A-201ENST00000263630 MTCP1P56278 107 aa13.06□□□□□ -0.32
CCDC88A-201ENST00000263630 GALNT2Q10471 571 aa13.06□□□□□ -0.32
CCDC88A-201ENST00000263630 OR5I1Q13606 314 aa13.06□□□□□ -0.32
CCDC88A-201ENST00000263630 KLHDC8AQ8IYD2 350 aa13.06□□□□□ -0.32
CCDC88A-201ENST00000263630 CMTM8Q8IZV2 173 aa13.06□□□□□ -0.32
CCDC88A-201ENST00000263630 ZMYND19Q96E35 227 aaPredicted RBP13.06□□□□□ -0.32
CCDC88A-201ENST00000263630 PURBQ96QR8 312 aaKnown RBP13.06□□□□□ -0.32
CCDC88A-201ENST00000263630 NTPCRQ9BSD7 190 aaKnown RBP13.06□□□□□ -0.32
CCDC88A-201ENST00000263630 CAMK2AQ9UQM7 478 aa13.06□□□□□ -0.32
CCDC88A-201ENST00000263630 KNTC1P50748 2209 aa13.06□□□□□ -0.32
CCDC88A-201ENST00000263630 G3V3Q6 166 aa13.06□□□□□ -0.32
CCDC88A-201ENST00000263630 BPIFB3P59826 476 aa13.06□□□□□ -0.32
CCDC88A-201ENST00000263630 GPR18Q14330 331 aa13.06□□□□□ -0.32
CCDC88A-201ENST00000263630 OPCMLQ14982 345 aa13.06□□□□□ -0.32
CCDC88A-201ENST00000263630 TXNDC8Q6A555 127 aa13.06□□□□□ -0.32
CCDC88A-201ENST00000263630 CTDSP1Q9GZU7 261 aa13.06□□□□□ -0.32
CCDC88A-201ENST00000263630 ZNF587BE7ETH6 402 aa13.06□□□□□ -0.32
CCDC88A-201ENST00000263630 PRAMEF11O60813 436 aa13.06□□□□□ -0.32
CCDC88A-201ENST00000263630 OPRL1P41146 370 aa13.06□□□□□ -0.32
CCDC88A-201ENST00000263630 TGM4P49221 684 aa13.06□□□□□ -0.32
CCDC88A-201ENST00000263630 ZNF626Q68DY1 528 aa13.06□□□□□ -0.32
CCDC88A-201ENST00000263630 OR5M8Q8NGP6 311 aa13.06□□□□□ -0.32
CCDC88A-201ENST00000263630 FAM234AQ9H0X4 552 aa13.06□□□□□ -0.32
CCDC88A-201ENST00000263630 PCED1AQ9H1Q7 454 aa13.06□□□□□ -0.32
CCDC88A-201ENST00000263630 ETV7Q9Y603 341 aa13.06□□□□□ -0.32
CCDC88A-201ENST00000263630 ICAM2P13598 275 aa13.05□□□□□ -0.32
CCDC88A-201ENST00000263630 TBCEQ15813 527 aaPredicted RBP13.05□□□□□ -0.32
CCDC88A-201ENST00000263630 TP53I3Q53FA7 332 aa13.05□□□□□ -0.32
CCDC88A-201ENST00000263630 TMEM19Q96HH6 336 aa13.05□□□□□ -0.32
CCDC88A-201ENST00000263630 C1orf74Q96LT6 269 aa13.05□□□□□ -0.32
CCDC88A-201ENST00000263630 ELOVL3Q9HB03 270 aa13.05□□□□□ -0.32
CCDC88A-201ENST00000263630 SPHK1Q9NYA1 384 aa13.05□□□□□ -0.32
CCDC88A-201ENST00000263630 ELNP15502 786 aa13.05□□□□□ -0.32
CCDC88A-201ENST00000263630 KCTD11Q693B1 232 aa13.05□□□□□ -0.32
CCDC88A-201ENST00000263630 H2BFWTQ7Z2G1 175 aa13.05□□□□□ -0.32
CCDC88A-201ENST00000263630 OR4K5Q8NGD3 323 aa13.05□□□□□ -0.32
CCDC88A-201ENST00000263630 NIT2Q9NQR4 276 aa13.05□□□□□ -0.32
CCDC88A-201ENST00000263630 NECAP2Q9NVZ3 263 aa13.05□□□□□ -0.32
CCDC88A-201ENST00000263630 TEX50A0A1B0GTY4 177 aa13.05□□□□□ -0.32
CCDC88A-201ENST00000263630 FZD7O75084 574 aa13.05□□□□□ -0.32
CCDC88A-201ENST00000263630 CD46P15529 392 aa13.05□□□□□ -0.32
CCDC88A-201ENST00000263630 NADSYN1Q6IA69 706 aa13.05□□□□□ -0.32
CCDC88A-201ENST00000263630 SMOQ99835 787 aa13.05□□□□□ -0.32
CCDC88A-201ENST00000263630 NOCTQ9UK39 431 aaKnown RBP13.05□□□□□ -0.32
CCDC88A-201ENST00000263630 DBX1A6NMT0 343 aa13.05□□□□□ -0.32
CCDC88A-201ENST00000263630 RNASEK-C17orf49H0YIS7 233 aa13.05□□□□□ -0.32
CCDC88A-201ENST00000263630 M0QZ24 198 aa13.05□□□□□ -0.32
CCDC88A-201ENST00000263630 ZNF217O75362 1048 aa13.05□□□□□ -0.32
CCDC88A-201ENST00000263630 OR2J3O76001 311 aa13.05□□□□□ -0.32
CCDC88A-201ENST00000263630 PFKMP08237 780 aa13.05□□□□□ -0.32
CCDC88A-201ENST00000263630 C11orf42Q8N5U0 333 aa13.05□□□□□ -0.32
CCDC88A-201ENST00000263630 LILRB4Q8NHJ6 448 aa13.05□□□□□ -0.32
CCDC88A-201ENST00000263630 DPH1Q9BZG8 443 aa13.05□□□□□ -0.32
CCDC88A-201ENST00000263630 TAF9BQ9HBM6 251 aa13.05□□□□□ -0.32
CCDC88A-201ENST00000263630 POM121CA8CG34 1229 aa13.05□□□□□ -0.32
CCDC88A-201ENST00000263630 OR7C1O76099 320 aaPredicted RBP13.05□□□□□ -0.32
CCDC88A-201ENST00000263630 HHEXQ03014 270 aa13.05□□□□□ -0.32
CCDC88A-201ENST00000263630 OR6V1Q8N148 313 aa13.05□□□□□ -0.32
CCDC88A-201ENST00000263630 GKN1Q9NS71 199 aa13.05□□□□□ -0.32
CCDC88A-201ENST00000263630 PGAP2Q9UHJ9 254 aa13.05□□□□□ -0.32
CCDC88A-201ENST00000263630 ATRNO75882 1429 aa13.05□□□□□ -0.32
CCDC88A-201ENST00000263630 UBE2IP63279 158 aaKnown RBP13.05□□□□□ -0.32
CCDC88A-201ENST00000263630 TFAP2BQ92481 460 aa13.05□□□□□ -0.32
CCDC88A-201ENST00000263630 MARC2Q969Z3 335 aa13.05□□□□□ -0.32
CCDC88A-201ENST00000263630 NUDT22Q9BRQ3 303 aa13.05□□□□□ -0.32
CCDC88A-201ENST00000263630 PLEKHF2Q9H8W4 249 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms