RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 DIO1P49895 249 aa16.35■□□□□ 0.21
CLN3-259ENST00000637551 NCALDP61601 193 aa16.35■□□□□ 0.21
CLN3-259ENST00000637551 SF3A3Q12874 501 aaKnown RBP eCLIP16.35■□□□□ 0.21
CLN3-259ENST00000637551 NRF1Q16656 503 aa16.35■□□□□ 0.21
CLN3-259ENST00000637551 SP5Q6BEB4 398 aaPredicted RBP16.35■□□□□ 0.21
CLN3-259ENST00000637551 SLC15A3Q8IY34 581 aa16.35■□□□□ 0.21
CLN3-259ENST00000637551 POU5F2Q8N7G0 328 aa16.35■□□□□ 0.21
CLN3-259ENST00000637551 C3orf49Q96BT1 292 aa16.35■□□□□ 0.21
CLN3-259ENST00000637551 SPAG4Q9NPE6 437 aa16.35■□□□□ 0.21
CLN3-259ENST00000637551 TMEM181Q9P2C4 612 aa16.35■□□□□ 0.21
CLN3-259ENST00000637551 ADAM21Q9UKJ8 722 aa16.35■□□□□ 0.21
CLN3-259ENST00000637551 A8MVM7 634 aa16.34■□□□□ 0.21
CLN3-259ENST00000637551 TMEM229AB2RXF0 380 aa16.34■□□□□ 0.21
CLN3-259ENST00000637551 M0QX08 132 aa16.34■□□□□ 0.21
CLN3-259ENST00000637551 SULT2B1O00204 365 aa16.34■□□□□ 0.21
CLN3-259ENST00000637551 AIM2O14862 343 aa16.34■□□□□ 0.21
CLN3-259ENST00000637551 GCM2O75603 506 aaPredicted RBP16.34■□□□□ 0.21
CLN3-259ENST00000637551 AQP8O94778 261 aa16.34■□□□□ 0.21
CLN3-259ENST00000637551 GKN3PP0CG01 181 aa16.34■□□□□ 0.21
CLN3-259ENST00000637551 COX6B1P14854 86 aa16.34■□□□□ 0.21
CLN3-259ENST00000637551 ENPP1P22413 925 aa16.34■□□□□ 0.21
CLN3-259ENST00000637551 SHC1P29353 583 aa16.34■□□□□ 0.21
CLN3-259ENST00000637551 KIR2DL2P43627 348 aaPredicted RBP16.34■□□□□ 0.21
CLN3-259ENST00000637551 NUDT2P50583 147 aa16.34■□□□□ 0.21
CLN3-259ENST00000637551 RGS8P57771 180 aaPredicted RBP16.34■□□□□ 0.21
CLN3-259ENST00000637551 H3F3AP84243 136 aa16.34■□□□□ 0.21
CLN3-259ENST00000637551 DMTNQ08495 405 aa16.34■□□□□ 0.21
CLN3-259ENST00000637551 KRT72Q14CN4 511 aa16.34■□□□□ 0.21
CLN3-259ENST00000637551 ZNF613Q6PF04 617 aa16.34■□□□□ 0.21
CLN3-259ENST00000637551 ULK3Q6PHR2 472 aa16.34■□□□□ 0.21
CLN3-259ENST00000637551 FCRLAQ7L513 359 aa16.34■□□□□ 0.21
CLN3-259ENST00000637551 HMGN2P46Q86SG4 172 aa16.34■□□□□ 0.21
CLN3-259ENST00000637551 ATG4DQ86TL0 474 aaPredicted RBP16.34■□□□□ 0.21
CLN3-259ENST00000637551 MCEMP1Q8IX19 187 aa16.34■□□□□ 0.21
CLN3-259ENST00000637551 DMRTC2Q8IXT2 367 aaPredicted RBP16.34■□□□□ 0.21
CLN3-259ENST00000637551 OR6S1Q8NH40 331 aa16.34■□□□□ 0.21
CLN3-259ENST00000637551 C14orf79Q96F83 325 aa16.34■□□□□ 0.21
CLN3-259ENST00000637551 OR5B2Q96R09 309 aa16.34■□□□□ 0.21
CLN3-259ENST00000637551 ARHGDIGQ99819 225 aa16.34■□□□□ 0.21
CLN3-259ENST00000637551 NPDC1Q9NQX5 325 aaPredicted RBP16.34■□□□□ 0.21
CLN3-259ENST00000637551 PLSCR4Q9NRQ2 329 aa16.34■□□□□ 0.21
CLN3-259ENST00000637551 ELOVL5Q9NYP7 299 aa16.34■□□□□ 0.21
CLN3-259ENST00000637551 KLHL13Q9P2N7 655 aa16.34■□□□□ 0.21
CLN3-259ENST00000637551 KCNN3Q9UGI6 736 aa16.34■□□□□ 0.21
CLN3-259ENST00000637551 SLC9A8Q9Y2E8 581 aa16.34■□□□□ 0.21
CLN3-259ENST00000637551 CELSR1Q9NYQ6 3014 aa16.33■□□□□ 0.21
CLN3-259ENST00000637551 IGKV3D-15A0A087WSY6 115 aa16.33■□□□□ 0.2
CLN3-259ENST00000637551 ELOVL7A1L3X0 281 aa16.33■□□□□ 0.2
CLN3-259ENST00000637551 ZNF724A8MTY0 619 aa16.33■□□□□ 0.2
CLN3-259ENST00000637551 A8MXE2 369 aa16.33■□□□□ 0.2
CLN3-259ENST00000637551 CYTIPO60759 359 aa16.33■□□□□ 0.2
CLN3-259ENST00000637551 NPIPB7O75200 414 aa16.33■□□□□ 0.2
CLN3-259ENST00000637551 PRKD3O94806 890 aa16.33■□□□□ 0.2
CLN3-259ENST00000637551 CNOT4O95628 575 aaKnown RBP16.33■□□□□ 0.2
CLN3-259ENST00000637551 PLGP00747 810 aaPredicted RBP16.33■□□□□ 0.2
CLN3-259ENST00000637551 SLC16A1P53985 500 aa16.33■□□□□ 0.2
CLN3-259ENST00000637551 CTBP2P56545 445 aa16.33■□□□□ 0.2
CLN3-259ENST00000637551 SLC35A1P78382 337 aa16.33■□□□□ 0.2
CLN3-259ENST00000637551 FOXF2Q12947 444 aa16.33■□□□□ 0.2
CLN3-259ENST00000637551 MYBPHQ13203 477 aa16.33■□□□□ 0.2
CLN3-259ENST00000637551 ABLIM2Q6H8Q1 611 aa16.33■□□□□ 0.2
CLN3-259ENST00000637551 PAQR6Q6TCH4 344 aa16.33■□□□□ 0.2
CLN3-259ENST00000637551 MICU2Q8IYU8 434 aa16.33■□□□□ 0.2
CLN3-259ENST00000637551 GCNT2Q8N0V5 402 aa16.33■□□□□ 0.2
CLN3-259ENST00000637551 PIGXQ8TBF5 258 aa16.33■□□□□ 0.2
CLN3-259ENST00000637551 SLC26A7Q8TE54 656 aa16.33■□□□□ 0.2
CLN3-259ENST00000637551 STARD4Q96DR4 205 aa16.33■□□□□ 0.2
CLN3-259ENST00000637551 SRXN1Q9BYN0 137 aa16.33■□□□□ 0.2
CLN3-259ENST00000637551 ALG2Q9H553 416 aa16.33■□□□□ 0.2
CLN3-259ENST00000637551 EMC3Q9P0I2 261 aa16.33■□□□□ 0.2
CLN3-259ENST00000637551 RPS6KB2Q9UBS0 482 aa16.33■□□□□ 0.2
CLN3-259ENST00000637551 TAGLN3Q9UI15 199 aa16.33■□□□□ 0.2
CLN3-259ENST00000637551 NKX2-6A6NCS4 301 aa16.32■□□□□ 0.2
CLN3-259ENST00000637551 GPR171O14626 319 aa16.32■□□□□ 0.2
CLN3-259ENST00000637551 OR2T1O43869 369 aa16.32■□□□□ 0.2
CLN3-259ENST00000637551 CGAP01215 116 aa16.32■□□□□ 0.2
CLN3-259ENST00000637551 GPIP06744 558 aa16.32■□□□□ 0.2
CLN3-259ENST00000637551 PRG2P13727 222 aa16.32■□□□□ 0.2
CLN3-259ENST00000637551 CD247P20963 164 aa16.32■□□□□ 0.2
CLN3-259ENST00000637551 GRNP28799 593 aaKnown RBP16.32■□□□□ 0.2
CLN3-259ENST00000637551 AQP1P29972 269 aa16.32■□□□□ 0.2
CLN3-259ENST00000637551 MFSD13AQ14CX5 517 aa16.32■□□□□ 0.2
CLN3-259ENST00000637551 DUSP7Q16829 419 aa16.32■□□□□ 0.2
CLN3-259ENST00000637551 CCDC197Q8NCU1 140 aa16.32■□□□□ 0.2
CLN3-259ENST00000637551 OR52E4Q8NGH9 312 aa16.32■□□□□ 0.2
CLN3-259ENST00000637551 SLC38A4Q969I6 547 aa16.32■□□□□ 0.2
CLN3-259ENST00000637551 TAMM41Q96BW9 452 aa16.32■□□□□ 0.2
CLN3-259ENST00000637551 SLC47A1Q96FL8 570 aa16.32■□□□□ 0.2
CLN3-259ENST00000637551 RSPO3Q9BXY4 272 aaPredicted RBP16.32■□□□□ 0.2
CLN3-259ENST00000637551 TRIM8Q9BZR9 551 aa16.32■□□□□ 0.2
CLN3-259ENST00000637551 UCK2Q9BZX2 261 aa16.32■□□□□ 0.2
CLN3-259ENST00000637551 OR10A4Q9H209 315 aa16.32■□□□□ 0.2
CLN3-259ENST00000637551 TMEM27Q9HBJ8 222 aa16.32■□□□□ 0.2
CLN3-259ENST00000637551 CMTM6Q9NX76 183 aa16.32■□□□□ 0.2
CLN3-259ENST00000637551 SELENONQ9NZV5 590 aa16.32■□□□□ 0.2
CLN3-259ENST00000637551 A0A0B4J2E0 115 aa16.31■□□□□ 0.2
CLN3-259ENST00000637551 A0A1B0GX12 115 aa16.31■□□□□ 0.2
CLN3-259ENST00000637551 TMEM72A0PK05 275 aa16.31■□□□□ 0.2
CLN3-259ENST00000637551 EEF1E1-BLOC1S5C9J1V9 151 aa16.31■□□□□ 0.2
CLN3-259ENST00000637551 SMAD9O15198 467 aaKnown RBP16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms