RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 MAGEA8P43361 318 aa14.18□□□□□ -0.14
CLN3-246ENST00000636228 KHKP50053 298 aa14.18□□□□□ -0.14
CLN3-246ENST00000636228 SLC25A3Q00325 362 aa14.18□□□□□ -0.14
CLN3-246ENST00000636228 RAB35Q15286 201 aa14.18□□□□□ -0.14
CLN3-246ENST00000636228 NRF1Q16656 503 aa14.18□□□□□ -0.14
CLN3-246ENST00000636228 ANXA8L1Q5VT79 327 aa14.18□□□□□ -0.14
CLN3-246ENST00000636228 KLHL17Q6TDP4 642 aa14.18□□□□□ -0.14
CLN3-246ENST00000636228 RNF130Q86XS8 419 aa14.18□□□□□ -0.14
CLN3-246ENST00000636228 FBXL14Q8N1E6 418 aa14.18□□□□□ -0.14
CLN3-246ENST00000636228 MUC15Q8N387 334 aa14.18□□□□□ -0.14
CLN3-246ENST00000636228 ZNF525Q8N782 197 aa14.18□□□□□ -0.14
CLN3-246ENST00000636228 VPS37AQ8NEZ2 397 aa14.18□□□□□ -0.14
CLN3-246ENST00000636228 OR10H5Q8NGA6 315 aa14.18□□□□□ -0.14
CLN3-246ENST00000636228 SORT1Q99523 831 aa14.18□□□□□ -0.14
CLN3-246ENST00000636228 NUF2Q9BZD4 464 aa14.18□□□□□ -0.14
CLN3-246ENST00000636228 MANSC1Q9H8J5 431 aa14.18□□□□□ -0.14
CLN3-246ENST00000636228 SLC7A10Q9NS82 523 aa14.18□□□□□ -0.14
CLN3-246ENST00000636228 OSGIN1Q9UJX0 560 aa14.18□□□□□ -0.14
CLN3-246ENST00000636228 MGAT4BQ9UQ53 548 aa14.18□□□□□ -0.14
CLN3-246ENST00000636228 TMED7Q9Y3B3 224 aa14.18□□□□□ -0.14
CLN3-246ENST00000636228 RAP2CQ9Y3L5 183 aa14.18□□□□□ -0.14
CLN3-246ENST00000636228 SONP18583 2426 aaKnown RBP14.17□□□□□ -0.14
CLN3-246ENST00000636228 ZC3H12DA2A288 527 aaKnown RBP14.17□□□□□ -0.14
CLN3-246ENST00000636228 LY6HO94772 140 aa14.17□□□□□ -0.14
CLN3-246ENST00000636228 GSNP06396 782 aa14.17□□□□□ -0.14
CLN3-246ENST00000636228 CHRM4P08173 479 aa14.17□□□□□ -0.14
CLN3-246ENST00000636228 GUSBP08236 651 aa14.17□□□□□ -0.14
CLN3-246ENST00000636228 MYZAPP0CAP1 466 aa14.17□□□□□ -0.14
CLN3-246ENST00000636228 TACR3P29371 465 aa14.17□□□□□ -0.14
CLN3-246ENST00000636228 SLC1A6P48664 564 aa14.17□□□□□ -0.14
CLN3-246ENST00000636228 RPL14P50914 215 aaKnown RBP14.17□□□□□ -0.14
CLN3-246ENST00000636228 SLC16A1P53985 500 aa14.17□□□□□ -0.14
CLN3-246ENST00000636228 HPCAP84074 193 aa14.17□□□□□ -0.14
CLN3-246ENST00000636228 FAM174BQ3ZCQ3 159 aa14.17□□□□□ -0.14
CLN3-246ENST00000636228 TSPO2Q5TGU0 170 aa14.17□□□□□ -0.14
CLN3-246ENST00000636228 CLEC2AQ6UVW9 174 aa14.17□□□□□ -0.14
CLN3-246ENST00000636228 PHC2Q8IXK0 858 aa14.17□□□□□ -0.14
CLN3-246ENST00000636228 AENQ8WTP8 325 aaKnown RBP14.17□□□□□ -0.14
CLN3-246ENST00000636228 TESCQ96BS2 214 aa14.17□□□□□ -0.14
CLN3-246ENST00000636228 INPP5KQ9BT40 448 aa14.17□□□□□ -0.14
CLN3-246ENST00000636228 SLC38A1Q9H2H9 487 aa14.17□□□□□ -0.14
CLN3-246ENST00000636228 EXOSC3Q9NQT5 275 aaKnown RBP14.17□□□□□ -0.14
CLN3-246ENST00000636228 PNPOQ9NVS9 261 aa14.17□□□□□ -0.14
CLN3-246ENST00000636228 UPB1Q9UBR1 384 aa14.17□□□□□ -0.14
CLN3-246ENST00000636228 MALT1Q9UDY8 824 aa14.17□□□□□ -0.14
CLN3-246ENST00000636228 FLVCR1Q9Y5Y0 555 aa14.17□□□□□ -0.14
CLN3-246ENST00000636228 COL6A5A8TX70 2615 aa14.17□□□□□ -0.14
CLN3-246ENST00000636228 NUP214P35658 2090 aaPredicted RBP14.16□□□□□ -0.14
CLN3-246ENST00000636228 PDLIM1O00151 329 aa14.16□□□□□ -0.14
CLN3-246ENST00000636228 LBPP18428 481 aa14.16□□□□□ -0.14
CLN3-246ENST00000636228 CDH2P19022 906 aaPredicted RBP14.16□□□□□ -0.14
CLN3-246ENST00000636228 BGNP21810 368 aa14.16□□□□□ -0.14
CLN3-246ENST00000636228 IL12AP29459 219 aa14.16□□□□□ -0.14
CLN3-246ENST00000636228 S100A3P33764 101 aa14.16□□□□□ -0.14
CLN3-246ENST00000636228 CDKN2CP42773 168 aa14.16□□□□□ -0.14
CLN3-246ENST00000636228 CLK1P49759 484 aaKnown RBP14.16□□□□□ -0.14
CLN3-246ENST00000636228 UFM1P61960 85 aa14.16□□□□□ -0.14
CLN3-246ENST00000636228 H3F3AP84243 136 aa14.16□□□□□ -0.14
CLN3-246ENST00000636228 TMEM249Q2WGJ8 235 aa14.16□□□□□ -0.14
CLN3-246ENST00000636228 CHRFAM7AQ494W8 412 aa14.16□□□□□ -0.14
CLN3-246ENST00000636228 COX20Q5RI15 118 aa14.16□□□□□ -0.14
CLN3-246ENST00000636228 C6orf52Q5T4I8 152 aa14.16□□□□□ -0.14
CLN3-246ENST00000636228 AP1ARQ63HQ0 302 aa14.16□□□□□ -0.14
CLN3-246ENST00000636228 PODNL1Q6PEZ8 512 aa14.16□□□□□ -0.14
CLN3-246ENST00000636228 SSX8Q7RTT4 187 aa14.16□□□□□ -0.14
CLN3-246ENST00000636228 DEPDC4Q8N2C3 294 aa14.16□□□□□ -0.14
CLN3-246ENST00000636228 PNPT1Q8TCS8 783 aaKnown RBP14.16□□□□□ -0.14
CLN3-246ENST00000636228 NANOS1Q8WY41 292 aaKnown RBP14.16□□□□□ -0.14
CLN3-246ENST00000636228 DDIT4LQ96D03 193 aa14.16□□□□□ -0.14
CLN3-246ENST00000636228 ZIM3Q96PE6 472 aa14.16□□□□□ -0.14
CLN3-246ENST00000636228 TNFRSF13CQ96RJ3 184 aa14.16□□□□□ -0.14
CLN3-246ENST00000636228 SLC17A5Q9NRA2 495 aa14.16□□□□□ -0.14
CLN3-246ENST00000636228 RLIMQ9NVW2 624 aa14.16□□□□□ -0.14
CLN3-246ENST00000636228 TRAPPC4Q9Y296 219 aa14.16□□□□□ -0.14
CLN3-246ENST00000636228 CADP27708 2225 aa14.16□□□□□ -0.14
CLN3-246ENST00000636228 ATRQ13535 2644 aa14.16□□□□□ -0.14
CLN3-246ENST00000636228 CR1P17927 2039 aa14.15□□□□□ -0.14
CLN3-246ENST00000636228 CCDC154A6NI56 674 aa14.15□□□□□ -0.14
CLN3-246ENST00000636228 AGAP5A6NIR3 686 aa14.15□□□□□ -0.14
CLN3-246ENST00000636228 KLF11O14901 512 aa14.15□□□□□ -0.14
CLN3-246ENST00000636228 DNPH1O43598 174 aa14.15□□□□□ -0.14
CLN3-246ENST00000636228 IFNA2P01563 188 aa14.15□□□□□ -0.14
CLN3-246ENST00000636228 HTR3AP46098 478 aa14.15□□□□□ -0.14
CLN3-246ENST00000636228 POLR2HP52434 150 aaKnown RBP14.15□□□□□ -0.14
CLN3-246ENST00000636228 SLC35A1P78382 337 aa14.15□□□□□ -0.14
CLN3-246ENST00000636228 MPP2Q14168 576 aa14.15□□□□□ -0.14
CLN3-246ENST00000636228 SLC17A1Q14916 467 aa14.15□□□□□ -0.14
CLN3-246ENST00000636228 KRT71Q3SY84 523 aa14.15□□□□□ -0.14
CLN3-246ENST00000636228 OR7E24Q6IFN5 339 aa14.15□□□□□ -0.14
CLN3-246ENST00000636228 ZNF621Q6ZSS3 439 aa14.15□□□□□ -0.14
CLN3-246ENST00000636228 OIT3Q8WWZ8 545 aa14.15□□□□□ -0.14
CLN3-246ENST00000636228 CCDC115Q96NT0 180 aa14.15□□□□□ -0.14
CLN3-246ENST00000636228 TRNT1Q96Q11 434 aaKnown RBP14.15□□□□□ -0.14
CLN3-246ENST00000636228 NAA11Q9BSU3 229 aaPredicted RBP14.15□□□□□ -0.14
CLN3-246ENST00000636228 CHD3Q12873 2000 aaKnown RBP14.14□□□□□ -0.15
CLN3-246ENST00000636228 E9PBE3 544 aa14.14□□□□□ -0.15
CLN3-246ENST00000636228 ATP6V1G2-DDX39BF2Z307 99 aa14.14□□□□□ -0.15
CLN3-246ENST00000636228 BIRC5O15392 142 aa14.14□□□□□ -0.15
CLN3-246ENST00000636228 AKR7A3O95154 331 aa14.14□□□□□ -0.15
CLN3-246ENST00000636228 ALDOCP09972 364 aaKnown RBP14.14□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms