RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 ACKR4Q9NPB9 350 aa14.58□□□□□ -0.08
SS18-211ENST00000578954 C20orf141Q9NUB4 165 aa14.58□□□□□ -0.08
SS18-211ENST00000578954 POFUT2Q9Y2G5 429 aa14.58□□□□□ -0.08
SS18-211ENST00000578954 SPIN1Q9Y657 262 aaPredicted RBP14.58□□□□□ -0.08
SS18-211ENST00000578954 MPDZO75970 2070 aa14.57□□□□□ -0.08
SS18-211ENST00000578954 TRAV36DV7A0A075B6V5 113 aa14.57□□□□□ -0.08
SS18-211ENST00000578954 ZC3H12DA2A288 527 aaKnown RBP14.57□□□□□ -0.08
SS18-211ENST00000578954 ENO4A6NNW6 628 aa14.57□□□□□ -0.08
SS18-211ENST00000578954 LINC01387J3KSC0 135 aa14.57□□□□□ -0.08
SS18-211ENST00000578954 ACOT7O00154 380 aa14.57□□□□□ -0.08
SS18-211ENST00000578954 IFI30P13284 250 aa14.57□□□□□ -0.08
SS18-211ENST00000578954 IL11P20809 199 aa14.57□□□□□ -0.08
SS18-211ENST00000578954 GSTM3P21266 225 aa14.57□□□□□ -0.08
SS18-211ENST00000578954 IGFBP5P24593 272 aa14.57□□□□□ -0.08
SS18-211ENST00000578954 CLK1P49759 484 aaKnown RBP14.57□□□□□ -0.08
SS18-211ENST00000578954 AQP4P55087 323 aa14.57□□□□□ -0.08
SS18-211ENST00000578954 GFRA1P56159 465 aa14.57□□□□□ -0.08
SS18-211ENST00000578954 PPIAP62937 165 aaKnown RBP14.57□□□□□ -0.08
SS18-211ENST00000578954 CRYZQ08257 329 aaKnown RBP14.57□□□□□ -0.08
SS18-211ENST00000578954 COX10Q12887 443 aa14.57□□□□□ -0.08
SS18-211ENST00000578954 ZNF800Q2TB10 664 aaPredicted RBP eCLIP14.57□□□□□ -0.08
SS18-211ENST00000578954 RAET1LQ5VY80 246 aa14.57□□□□□ -0.08
SS18-211ENST00000578954 IZUMO2Q6UXV1 221 aa14.57□□□□□ -0.08
SS18-211ENST00000578954 ASB18Q6ZVZ8 466 aa14.57□□□□□ -0.08
SS18-211ENST00000578954 SLC46A3Q7Z3Q1 461 aa14.57□□□□□ -0.08
SS18-211ENST00000578954 YRDCQ86U90 279 aaKnown RBP14.57□□□□□ -0.08
SS18-211ENST00000578954 GALNT4Q8N4A0 578 aa14.57□□□□□ -0.08
SS18-211ENST00000578954 SLC39A7Q92504 469 aa14.57□□□□□ -0.08
SS18-211ENST00000578954 BPIFA2Q96DR5 249 aa14.57□□□□□ -0.08
SS18-211ENST00000578954 CRELD1Q96HD1 420 aa14.57□□□□□ -0.08
SS18-211ENST00000578954 FAM46AQ96IP4 442 aaKnown RBP14.57□□□□□ -0.08
SS18-211ENST00000578954 UBL7Q96S82 380 aaPredicted RBP14.57□□□□□ -0.08
SS18-211ENST00000578954 PTDSS2Q9BVG9 487 aa14.57□□□□□ -0.08
SS18-211ENST00000578954 SERINC1Q9NRX5 453 aa14.57□□□□□ -0.08
SS18-211ENST00000578954 SMPD3Q9NY59 655 aaPredicted RBP14.57□□□□□ -0.08
SS18-211ENST00000578954 KIF17Q9P2E2 1029 aa14.57□□□□□ -0.08
SS18-211ENST00000578954 ZMIZ1Q9ULJ6 1067 aa14.57□□□□□ -0.08
SS18-211ENST00000578954 B3GNT3Q9Y2A9 372 aa14.57□□□□□ -0.08
SS18-211ENST00000578954 ACACBO00763 2458 aa14.57□□□□□ -0.08
SS18-211ENST00000578954 TPRP12270 2363 aaKnown RBP14.56□□□□□ -0.08
SS18-211ENST00000578954 LAMA5O15230 3695 aa14.56□□□□□ -0.08
SS18-211ENST00000578954 FAM166BA8MTA8 275 aa14.56□□□□□ -0.08
SS18-211ENST00000578954 E9PQ18 207 aa14.56□□□□□ -0.08
SS18-211ENST00000578954 KPNA4O00629 521 aaPredicted RBP14.56□□□□□ -0.08
SS18-211ENST00000578954 MAKP20794 623 aa14.56□□□□□ -0.08
SS18-211ENST00000578954 CHMP24386 653 aa14.56□□□□□ -0.08
SS18-211ENST00000578954 RFC3P40938 356 aa14.56□□□□□ -0.08
SS18-211ENST00000578954 MAGEA5P43359 124 aa14.56□□□□□ -0.08
SS18-211ENST00000578954 RAD23AP54725 363 aa14.56□□□□□ -0.08
SS18-211ENST00000578954 RAC1P63000 192 aa14.56□□□□□ -0.08
SS18-211ENST00000578954 FOXK2Q01167 660 aa14.56□□□□□ -0.08
SS18-211ENST00000578954 ZNF74Q16587 644 aa14.56□□□□□ -0.08
SS18-211ENST00000578954 SYT14P1Q58G82 188 aa14.56□□□□□ -0.08
SS18-211ENST00000578954 RNFT1Q5M7Z0 435 aa14.56□□□□□ -0.08
SS18-211ENST00000578954 C1orf140Q5VVS0 124 aa14.56□□□□□ -0.08
SS18-211ENST00000578954 POMZP3Q6PJE2 187 aa14.56□□□□□ -0.08
SS18-211ENST00000578954 KLHL17Q6TDP4 642 aa14.56□□□□□ -0.08
SS18-211ENST00000578954 LSRQ86X29 649 aaPredicted RBP14.56□□□□□ -0.08
SS18-211ENST00000578954 P3H2Q8IVL5 708 aa14.56□□□□□ -0.08
SS18-211ENST00000578954 CDK20Q8IZL9 346 aa14.56□□□□□ -0.08
SS18-211ENST00000578954 CLDN22Q8N7P3 220 aa14.56□□□□□ -0.08
SS18-211ENST00000578954 OR5M1Q8NGP8 315 aa14.56□□□□□ -0.08
SS18-211ENST00000578954 OR14L1PQ8NHC6 308 aa14.56□□□□□ -0.08
SS18-211ENST00000578954 C9orf43Q8TAL5 461 aaPredicted RBP14.56□□□□□ -0.08
SS18-211ENST00000578954 DDIT4LQ96D03 193 aa14.56□□□□□ -0.08
SS18-211ENST00000578954 KTI12Q96EK9 354 aaPredicted RBP14.56□□□□□ -0.08
SS18-211ENST00000578954 SGTBQ96EQ0 304 aa14.56□□□□□ -0.08
SS18-211ENST00000578954 GABARAPL3Q9BY60 117 aa14.56□□□□□ -0.08
SS18-211ENST00000578954 UCK2Q9BZX2 261 aa14.56□□□□□ -0.08
SS18-211ENST00000578954 ZNF556Q9HAH1 456 aa14.56□□□□□ -0.08
SS18-211ENST00000578954 PAPOLBQ9NRJ5 636 aaKnown RBP14.56□□□□□ -0.08
SS18-211ENST00000578954 KRT84Q9NSB2 600 aa14.56□□□□□ -0.08
SS18-211ENST00000578954 REV1Q9UBZ9 1251 aa14.56□□□□□ -0.08
SS18-211ENST00000578954 ENOPH1Q9UHY7 261 aa14.56□□□□□ -0.08
SS18-211ENST00000578954 LHX6Q9UPM6 363 aa14.56□□□□□ -0.08
SS18-211ENST00000578954 RPH3AQ9Y2J0 694 aaPredicted RBP14.56□□□□□ -0.08
SS18-211ENST00000578954 FREM3P0C091 2139 aa14.56□□□□□ -0.08
SS18-211ENST00000578954 FTCDNL1E5RQL4 147 aa14.55□□□□□ -0.08
SS18-211ENST00000578954 CDC42EP2O14613 210 aa14.55□□□□□ -0.08
SS18-211ENST00000578954 OR2T1O43869 369 aa14.55□□□□□ -0.08
SS18-211ENST00000578954 MITFO75030 526 aaPredicted RBP14.55□□□□□ -0.08
SS18-211ENST00000578954 TRAPPC6AO75865 159 aa14.55□□□□□ -0.08
SS18-211ENST00000578954 OR7A10O76100 309 aa14.55□□□□□ -0.08
SS18-211ENST00000578954 AHSA1O95433 338 aa14.55□□□□□ -0.08
SS18-211ENST00000578954 BGLAPP02818 100 aa14.55□□□□□ -0.08
SS18-211ENST00000578954 TP53P04637 393 aaPredicted RBP14.55□□□□□ -0.08
SS18-211ENST00000578954 CELA3AP09093 270 aa14.55□□□□□ -0.08
SS18-211ENST00000578954 FAM87AP0C7U9 286 aa14.55□□□□□ -0.08
SS18-211ENST00000578954 PTNP21246 168 aa14.55□□□□□ -0.08
SS18-211ENST00000578954 GPR4P46093 362 aa14.55□□□□□ -0.08
SS18-211ENST00000578954 HSPA13P48723 471 aa14.55□□□□□ -0.08
SS18-211ENST00000578954 SLC9A3P48764 834 aa14.55□□□□□ -0.08
SS18-211ENST00000578954 ALDH6A1Q02252 535 aaKnown RBP14.55□□□□□ -0.08
SS18-211ENST00000578954 LTBQ06643 244 aa14.55□□□□□ -0.08
SS18-211ENST00000578954 TOMM20Q15388 145 aa14.55□□□□□ -0.08
SS18-211ENST00000578954 WIPI1Q5MNZ9 446 aaPredicted RBP14.55□□□□□ -0.08
SS18-211ENST00000578954 FAM69AQ5T7M9 428 aa14.55□□□□□ -0.08
SS18-211ENST00000578954 SLC6A19Q695T7 634 aa14.55□□□□□ -0.08
SS18-211ENST00000578954 RASSF6Q6ZTQ3 369 aa14.55□□□□□ -0.08
SS18-211ENST00000578954 GTPBP3Q969Y2 492 aaKnown RBP14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms