RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 BBS10Q8TAM1 723 aa18■□□□□ 0.47
CLK3-225ENST00000569063 NPHS2Q9NP85 383 aa18■□□□□ 0.47
CLK3-225ENST00000569063 EMC3Q9P0I2 261 aa18■□□□□ 0.47
CLK3-225ENST00000569063 DCTN4Q9UJW0 460 aa18■□□□□ 0.47
CLK3-225ENST00000569063 TRIM33Q9UPN9 1127 aa18■□□□□ 0.47
CLK3-225ENST00000569063 CNOT4O95628 575 aaKnown RBP17.99■□□□□ 0.47
CLK3-225ENST00000569063 ARAFP10398 606 aa17.99■□□□□ 0.47
CLK3-225ENST00000569063 ETS2P15036 469 aa17.99■□□□□ 0.47
CLK3-225ENST00000569063 GPX2P18283 190 aa17.99■□□□□ 0.47
CLK3-225ENST00000569063 NCF2P19878 526 aaPredicted RBP17.99■□□□□ 0.47
CLK3-225ENST00000569063 SLC16A1P53985 500 aa17.99■□□□□ 0.47
CLK3-225ENST00000569063 OR2B6P58173 313 aa17.99■□□□□ 0.47
CLK3-225ENST00000569063 COPZ1P61923 177 aa17.99■□□□□ 0.47
CLK3-225ENST00000569063 SLC35A1P78382 337 aa17.99■□□□□ 0.47
CLK3-225ENST00000569063 ITGADQ13349 1161 aa17.99■□□□□ 0.47
CLK3-225ENST00000569063 BEX5Q5H9J7 111 aa17.99■□□□□ 0.47
CLK3-225ENST00000569063 ZNF311Q5JNZ3 666 aa17.99■□□□□ 0.47
CLK3-225ENST00000569063 GCNT6Q5T4J0 391 aa17.99■□□□□ 0.47
CLK3-225ENST00000569063 DLEU7Q6UYE1 221 aa17.99■□□□□ 0.47
CLK3-225ENST00000569063 C10orf111Q8N326 155 aa17.99■□□□□ 0.47
CLK3-225ENST00000569063 PIGXQ8TBF5 258 aa17.99■□□□□ 0.47
CLK3-225ENST00000569063 SLC35B4Q969S0 331 aa17.99■□□□□ 0.47
CLK3-225ENST00000569063 S100PBPQ96BU1 408 aa17.99■□□□□ 0.47
CLK3-225ENST00000569063 ZNF775Q96BV0 537 aaPredicted RBP17.99■□□□□ 0.47
CLK3-225ENST00000569063 HS3ST6Q96QI5 342 aa17.99■□□□□ 0.47
CLK3-225ENST00000569063 USB1Q9BQ65 265 aaKnown RBP17.99■□□□□ 0.47
CLK3-225ENST00000569063 POTEKPQ9BYX7 375 aa17.99■□□□□ 0.47
CLK3-225ENST00000569063 CORO2BQ9UQ03 480 aa17.99■□□□□ 0.47
CLK3-225ENST00000569063 ABCA4P78363 2273 aa17.98■□□□□ 0.47
CLK3-225ENST00000569063 ZC3H12DA2A288 527 aaKnown RBP17.98■□□□□ 0.47
CLK3-225ENST00000569063 C5orf58C9J3I9 102 aa17.98■□□□□ 0.47
CLK3-225ENST00000569063 EIF1BO60739 113 aaKnown RBP17.98■□□□□ 0.47
CLK3-225ENST00000569063 IMPDH2P12268 514 aa17.98■□□□□ 0.47
CLK3-225ENST00000569063 PRG2P13727 222 aa17.98■□□□□ 0.47
CLK3-225ENST00000569063 CXCR1P25024 350 aa17.98■□□□□ 0.47
CLK3-225ENST00000569063 EDNRAP25101 427 aa17.98■□□□□ 0.47
CLK3-225ENST00000569063 METTL21CQ5VZV1 264 aa17.98■□□□□ 0.47
CLK3-225ENST00000569063 KISS1RQ969F8 398 aaPredicted RBP17.98■□□□□ 0.47
CLK3-225ENST00000569063 DNAJA3Q96EY1 480 aa17.98■□□□□ 0.47
CLK3-225ENST00000569063 IKZF5Q9H5V7 419 aa17.98■□□□□ 0.47
CLK3-225ENST00000569063 PRSS50Q9UI38 385 aa17.98■□□□□ 0.47
CLK3-225ENST00000569063 HIVEP1P15822 2718 aa17.97■□□□□ 0.47
CLK3-225ENST00000569063 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP17.97■□□□□ 0.47
CLK3-225ENST00000569063 EVPLLA8MZ36 301 aa17.97■□□□□ 0.47
CLK3-225ENST00000569063 GPR171O14626 319 aa17.97■□□□□ 0.47
CLK3-225ENST00000569063 FPR1P21462 350 aa17.97■□□□□ 0.47
CLK3-225ENST00000569063 IL32P24001 234 aa17.97■□□□□ 0.47
CLK3-225ENST00000569063 NR1H2P55055 460 aa17.97■□□□□ 0.47
CLK3-225ENST00000569063 CDK6Q00534 326 aa17.97■□□□□ 0.47
CLK3-225ENST00000569063 TSC22D1Q15714 1073 aa17.97■□□□□ 0.47
CLK3-225ENST00000569063 REEP3Q6NUK4 255 aa17.97■□□□□ 0.47
CLK3-225ENST00000569063 SERPINA11Q86U17 422 aa17.97■□□□□ 0.47
CLK3-225ENST00000569063 CCDC103Q8IW40 242 aa17.97■□□□□ 0.47
CLK3-225ENST00000569063 ZNF100Q8IYN0 542 aa17.97■□□□□ 0.47
CLK3-225ENST00000569063 CADM2Q8N3J6 435 aa17.97■□□□□ 0.47
CLK3-225ENST00000569063 NFKBIDQ8NI38 313 aa17.97■□□□□ 0.47
CLK3-225ENST00000569063 TSPEARQ8WU66 669 aa17.97■□□□□ 0.47
CLK3-225ENST00000569063 HSD17B8Q92506 261 aa17.97■□□□□ 0.47
CLK3-225ENST00000569063 NAA11Q9BSU3 229 aaPredicted RBP17.97■□□□□ 0.47
CLK3-225ENST00000569063 TMEM38AQ9H6F2 299 aa17.97■□□□□ 0.47
CLK3-225ENST00000569063 BEX4Q9NWD9 120 aaPredicted RBP17.97■□□□□ 0.47
CLK3-225ENST00000569063 ZNF446Q9NWS9 450 aa17.97■□□□□ 0.47
CLK3-225ENST00000569063 LEF1Q9UJU2 399 aaPredicted RBP17.97■□□□□ 0.47
CLK3-225ENST00000569063 NOSIPQ9Y314 301 aaKnown RBP17.97■□□□□ 0.47
CLK3-225ENST00000569063 A0A0G2JND7 137 aa17.96■□□□□ 0.47
CLK3-225ENST00000569063 RAMP1O60894 148 aa17.96■□□□□ 0.47
CLK3-225ENST00000569063 PRKAR1BP31321 381 aa17.96■□□□□ 0.47
CLK3-225ENST00000569063 ACKR1Q16570 336 aa17.96■□□□□ 0.47
CLK3-225ENST00000569063 RUNDC3AQ59EK9 446 aa17.96■□□□□ 0.47
CLK3-225ENST00000569063 BHLHA15Q7RTS1 189 aaPredicted RBP17.96■□□□□ 0.47
CLK3-225ENST00000569063 WFDC8Q8IUA0 241 aa17.96■□□□□ 0.47
CLK3-225ENST00000569063 TGIF2LYQ8IUE0 185 aa17.96■□□□□ 0.47
CLK3-225ENST00000569063 DPP10Q8N608 796 aa17.96■□□□□ 0.47
CLK3-225ENST00000569063 CPPED1Q9BRF8 314 aaPredicted RBP17.96■□□□□ 0.47
CLK3-225ENST00000569063 RSPO3Q9BXY4 272 aaPredicted RBP17.96■□□□□ 0.47
CLK3-225ENST00000569063 NIPSNAP3AQ9UFN0 247 aaPredicted RBP17.96■□□□□ 0.47
CLK3-225ENST00000569063 NDUFAF1Q9Y375 327 aa17.96■□□□□ 0.47
CLK3-225ENST00000569063 AKAP6Q13023 2319 aa17.96■□□□□ 0.47
CLK3-225ENST00000569063 A8MVM7 634 aa17.95■□□□□ 0.46
CLK3-225ENST00000569063 GPIP06744 558 aa17.95■□□□□ 0.46
CLK3-225ENST00000569063 COX5AP20674 150 aa17.95■□□□□ 0.46
CLK3-225ENST00000569063 NTF4P34130 210 aa17.95■□□□□ 0.46
CLK3-225ENST00000569063 IDUAP35475 653 aa17.95■□□□□ 0.46
CLK3-225ENST00000569063 ADRM1Q16186 407 aa17.95■□□□□ 0.46
CLK3-225ENST00000569063 FBXW9Q5XUX1 488 aa17.95■□□□□ 0.46
CLK3-225ENST00000569063 PAQR6Q6TCH4 344 aa17.95■□□□□ 0.46
CLK3-225ENST00000569063 LSRQ86X29 649 aaPredicted RBP17.95■□□□□ 0.46
CLK3-225ENST00000569063 KRT73Q86Y46 540 aa17.95■□□□□ 0.46
CLK3-225ENST00000569063 APH1AQ96BI3 265 aa17.95■□□□□ 0.46
CLK3-225ENST00000569063 PLPPR2Q96GM1 343 aa17.95■□□□□ 0.46
CLK3-225ENST00000569063 PIP5K1AQ99755 562 aa17.95■□□□□ 0.46
CLK3-225ENST00000569063 TMEM204Q9BSN7 226 aa17.95■□□□□ 0.46
CLK3-225ENST00000569063 SPATA5L1Q9BVQ7 753 aa17.95■□□□□ 0.46
CLK3-225ENST00000569063 F8P00451 2351 aa17.95■□□□□ 0.46
CLK3-225ENST00000569063 LIPT2A6NK58 231 aa17.94■□□□□ 0.46
CLK3-225ENST00000569063 ANGPT2O15123 496 aa17.94■□□□□ 0.46
CLK3-225ENST00000569063 IGHV1-2P23083 117 aa17.94■□□□□ 0.46
CLK3-225ENST00000569063 SLC6A2P23975 617 aa17.94■□□□□ 0.46
CLK3-225ENST00000569063 BNIP2Q12982 314 aa17.94■□□□□ 0.46
CLK3-225ENST00000569063 CEACAM7Q14002 265 aa17.94■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms