RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 INPP5KQ9BT40 448 aa14.8□□□□□ -0.04
CLN3-211ENST00000564091 SAP130Q9H0E3 1048 aa14.8□□□□□ -0.04
CLN3-211ENST00000564091 TMEM181Q9P2C4 612 aa14.8□□□□□ -0.04
CLN3-211ENST00000564091 ATP23Q9Y6H3 246 aa14.8□□□□□ -0.04
CLN3-211ENST00000564091 TMED7-TICAM2A0A0A6YYA0 188 aa14.79□□□□□ -0.04
CLN3-211ENST00000564091 ELOA3DA6NLF2 546 aaPredicted RBP14.79□□□□□ -0.04
CLN3-211ENST00000564091 PDLIM1O00151 329 aa14.79□□□□□ -0.04
CLN3-211ENST00000564091 DNPH1O43598 174 aa14.79□□□□□ -0.04
CLN3-211ENST00000564091 LY6HO94772 140 aa14.79□□□□□ -0.04
CLN3-211ENST00000564091 GUSBP08236 651 aa14.79□□□□□ -0.04
CLN3-211ENST00000564091 IMPDH2P12268 514 aa14.79□□□□□ -0.04
CLN3-211ENST00000564091 ETV4P43268 484 aa14.79□□□□□ -0.04
CLN3-211ENST00000564091 MAGEA8P43361 318 aa14.79□□□□□ -0.04
CLN3-211ENST00000564091 H3F3AP84243 136 aa14.79□□□□□ -0.04
CLN3-211ENST00000564091 SLC25A3Q00325 362 aa14.79□□□□□ -0.04
CLN3-211ENST00000564091 LOXL1Q08397 574 aaPredicted RBP14.79□□□□□ -0.04
CLN3-211ENST00000564091 CHD3Q12873 2000 aaKnown RBP14.79□□□□□ -0.04
CLN3-211ENST00000564091 ELOA3BQ3SY89 546 aa14.79□□□□□ -0.04
CLN3-211ENST00000564091 GPAT3Q53EU6 434 aa14.79□□□□□ -0.04
CLN3-211ENST00000564091 ANXA8L1Q5VT79 327 aa14.79□□□□□ -0.04
CLN3-211ENST00000564091 AP1ARQ63HQ0 302 aa14.79□□□□□ -0.04
CLN3-211ENST00000564091 OR7E24Q6IFN5 339 aa14.79□□□□□ -0.04
CLN3-211ENST00000564091 ELOA3Q8NG57 546 aa14.79□□□□□ -0.04
CLN3-211ENST00000564091 NANOS1Q8WY41 292 aaKnown RBP14.79□□□□□ -0.04
CLN3-211ENST00000564091 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP14.79□□□□□ -0.045e-8■■■■■ 65.3
CLN3-211ENST00000564091 KCNK17Q96T54 332 aa14.79□□□□□ -0.04
CLN3-211ENST00000564091 POLE3Q9NRF9 147 aa14.79□□□□□ -0.04
CLN3-211ENST00000564091 SLC7A10Q9NS82 523 aa14.79□□□□□ -0.04
CLN3-211ENST00000564091 ST6GALNAC1Q9NSC7 600 aaPredicted RBP14.79□□□□□ -0.04
CLN3-211ENST00000564091 PLCE1Q9P212 2302 aa14.79□□□□□ -0.04
CLN3-211ENST00000564091 MARCOQ9UEW3 520 aaPredicted RBP14.79□□□□□ -0.04
CLN3-211ENST00000564091 TRAPPC4Q9Y296 219 aa14.79□□□□□ -0.04
CLN3-211ENST00000564091 TMED7Q9Y3B3 224 aa14.79□□□□□ -0.04
CLN3-211ENST00000564091 TMEM72A0PK05 275 aa14.78□□□□□ -0.04
CLN3-211ENST00000564091 PHF1O43189 567 aaPredicted RBP14.78□□□□□ -0.04
CLN3-211ENST00000564091 TYROBPO43914 113 aa14.78□□□□□ -0.04
CLN3-211ENST00000564091 FAM157CP0CG43 387 aa14.78□□□□□ -0.04
CLN3-211ENST00000564091 CHI3L1P36222 383 aaPredicted RBP14.78□□□□□ -0.04
CLN3-211ENST00000564091 CLK1P49759 484 aaKnown RBP14.78□□□□□ -0.04
CLN3-211ENST00000564091 VLDLRP98155 873 aa14.78□□□□□ -0.04
CLN3-211ENST00000564091 SMU1Q2TAY7 513 aa14.78□□□□□ -0.04
CLN3-211ENST00000564091 SPANXN4Q5MJ08 99 aa14.78□□□□□ -0.04
CLN3-211ENST00000564091 TSPO2Q5TGU0 170 aa14.78□□□□□ -0.04
CLN3-211ENST00000564091 ZNF544Q6NX49 715 aa14.78□□□□□ -0.04
CLN3-211ENST00000564091 ANKFN1Q8N957 763 aa14.78□□□□□ -0.04
CLN3-211ENST00000564091 VPS37AQ8NEZ2 397 aa14.78□□□□□ -0.04
CLN3-211ENST00000564091 OIT3Q8WWZ8 545 aa14.78□□□□□ -0.04
CLN3-211ENST00000564091 FAM168AQ92567 244 aa14.78□□□□□ -0.04
CLN3-211ENST00000564091 NEURL3Q96EH8 262 aa14.78□□□□□ -0.04
CLN3-211ENST00000564091 EXOSC3Q9NQT5 275 aaKnown RBP14.78□□□□□ -0.04
CLN3-211ENST00000564091 SLC17A5Q9NRA2 495 aa14.78□□□□□ -0.04
CLN3-211ENST00000564091 UPB1Q9UBR1 384 aa14.78□□□□□ -0.04
CLN3-211ENST00000564091 OSGIN1Q9UJX0 560 aa14.78□□□□□ -0.04
CLN3-211ENST00000564091 FLVCR1Q9Y5Y0 555 aa14.78□□□□□ -0.04
CLN3-211ENST00000564091 NUP214P35658 2090 aaPredicted RBP14.78□□□□□ -0.04
CLN3-211ENST00000564091 ANK2Q01484 3957 aa14.77□□□□□ -0.04
CLN3-211ENST00000564091 ZC3H12DA2A288 527 aaKnown RBP14.77□□□□□ -0.05
CLN3-211ENST00000564091 H7C417 338 aa14.77□□□□□ -0.05
CLN3-211ENST00000564091 HMGN4O00479 90 aa14.77□□□□□ -0.05
CLN3-211ENST00000564091 SLC25A16P16260 332 aa14.77□□□□□ -0.05
CLN3-211ENST00000564091 FKBP2P26885 142 aaKnown RBP14.77□□□□□ -0.05
CLN3-211ENST00000564091 TACR3P29371 465 aa14.77□□□□□ -0.05
CLN3-211ENST00000564091 HTR3AP46098 478 aa14.77□□□□□ -0.05
CLN3-211ENST00000564091 KHKP50053 298 aa14.77□□□□□ -0.05
CLN3-211ENST00000564091 SLC35A1P78382 337 aa14.77□□□□□ -0.05
CLN3-211ENST00000564091 HPCAP84074 193 aa14.77□□□□□ -0.05
CLN3-211ENST00000564091 CASP8Q14790 479 aa14.77□□□□□ -0.05
CLN3-211ENST00000564091 CHI3L2Q15782 390 aa14.77□□□□□ -0.05
CLN3-211ENST00000564091 RNF130Q86XS8 419 aa14.77□□□□□ -0.05
CLN3-211ENST00000564091 C10orf105Q8TEF2 133 aa14.77□□□□□ -0.05
CLN3-211ENST00000564091 SLC35A5Q9BS91 424 aa14.77□□□□□ -0.05
CLN3-211ENST00000564091 BEX2Q9BXY8 128 aa14.77□□□□□ -0.05
CLN3-211ENST00000564091 ROPN1BQ9BZX4 212 aaPredicted RBP14.77□□□□□ -0.05
CLN3-211ENST00000564091 AMBRA1Q9C0C7 1298 aa14.77□□□□□ -0.05
CLN3-211ENST00000564091 C20orf27Q9GZN8 174 aa14.77□□□□□ -0.05
CLN3-211ENST00000564091 ROPN1Q9HAT0 212 aaPredicted RBP14.77□□□□□ -0.05
CLN3-211ENST00000564091 CDC42EP3Q9UKI2 254 aa14.77□□□□□ -0.05
CLN3-211ENST00000564091 SLC9A8Q9Y2E8 581 aa14.77□□□□□ -0.05
CLN3-211ENST00000564091 NBEAL1Q6ZS30 2694 aa14.77□□□□□ -0.05
CLN3-211ENST00000564091 ATP6V1G2-DDX39BF2Z307 99 aa14.76□□□□□ -0.05
CLN3-211ENST00000564091 EIF1BO60739 113 aaKnown RBP14.76□□□□□ -0.05
CLN3-211ENST00000564091 SERPINE1P05121 402 aa14.76□□□□□ -0.05
CLN3-211ENST00000564091 CDH2P19022 906 aaPredicted RBP14.76□□□□□ -0.05
CLN3-211ENST00000564091 POLR2HP52434 150 aaKnown RBP14.76□□□□□ -0.05
CLN3-211ENST00000564091 EFNA4P52798 201 aa14.76□□□□□ -0.05
CLN3-211ENST00000564091 NME5P56597 212 aa14.76□□□□□ -0.05
CLN3-211ENST00000564091 ABCE1P61221 599 aaKnown RBP14.76□□□□□ -0.05
CLN3-211ENST00000564091 VSNL1P62760 191 aa14.76□□□□□ -0.05
CLN3-211ENST00000564091 SLC17A1Q14916 467 aa14.76□□□□□ -0.05
CLN3-211ENST00000564091 SYPL1Q16563 259 aa14.76□□□□□ -0.05
CLN3-211ENST00000564091 ARIH2OSQ8N7S6 290 aa14.76□□□□□ -0.05
CLN3-211ENST00000564091 TESCQ96BS2 214 aa14.76□□□□□ -0.05
CLN3-211ENST00000564091 DDIT4LQ96D03 193 aa14.76□□□□□ -0.05
CLN3-211ENST00000564091 ZIM3Q96PE6 472 aa14.76□□□□□ -0.05
CLN3-211ENST00000564091 NAA11Q9BSU3 229 aaPredicted RBP14.76□□□□□ -0.05
CLN3-211ENST00000564091 SLC38A1Q9H2H9 487 aa14.76□□□□□ -0.05
CLN3-211ENST00000564091 FKRPQ9H9S5 495 aa14.76□□□□□ -0.05
CLN3-211ENST00000564091 PARPBPQ9NWS1 579 aa14.76□□□□□ -0.05
CLN3-211ENST00000564091 DCTN4Q9UJW0 460 aa14.76□□□□□ -0.05
CLN3-211ENST00000564091 CR1P17927 2039 aa14.76□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms