RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 MLLT11Q13015 90 aaPredicted RBP9.98□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 SLC22A10Q63ZE4 541 aa9.98□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 ZNF425Q6IV72 752 aa9.98□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 KRT77Q7Z794 578 aa9.98□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 MCATQ8IVS2 390 aaKnown RBP9.98□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 MS4A15Q8N5U1 240 aa9.98□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 OR56A1Q8NGH5 318 aa9.98□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 MAFIPQ8WZ33 124 aa9.98□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 KIAA1143Q96AT1 154 aaPredicted RBP9.98□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 C10orf90Q96M02 699 aa9.98□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 OR7D2Q96RA2 312 aa9.98□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 TIMM29Q9BSF4 260 aa9.98□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 BTBD2Q9BX70 525 aa9.98□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 PRDM6Q9NQX0 595 aa9.98□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 GPN3Q9UHW5 284 aaPredicted RBP9.98□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 PLEKHA6Q9Y2H5 1048 aa9.98□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 SLCO1B1Q9Y6L6 691 aa9.98□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 A0A0X1KG70 313 aa9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 E9PI62 339 aa9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 TCRBP04435 133 aa9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 ADRB1P08588 477 aa9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 NFYAP23511 347 aaPredicted RBP9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 TNFRSF4P43489 277 aa9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 RFX2P48378 723 aa9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 TAF13Q15543 124 aa9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 SSX2Q16385 188 aa9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 OR2G6Q5TZ20 316 aa9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 TMEM88Q6PEY1 159 aa9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 METAP1DQ6UB28 335 aaPredicted RBP9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 ADGRG3Q86Y34 549 aa9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 LINC00518Q8N0U6 118 aa9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 SHISA5Q8N114 240 aa9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 SVBPQ8N300 66 aa9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 CHCHD4Q8N4Q1 142 aa9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 OR2L8Q8NGY9 312 aa9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 CREB3L4Q8TEY5 395 aa9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 RADILQ96JH8 1075 aa9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 NDC1Q9BTX1 674 aa9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 PDE7BQ9NP56 450 aa9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 IKZF2Q9UKS7 526 aa9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 LOC100509620A0A075B734 347 aa9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 A0A0A6YYJ9 748 aa9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 A0A1W2PQF6 199 aa9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 LINC00862A6NCI5 91 aa9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 DUXAA6NLW8 204 aa9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 UPK1AO00322 258 aa9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 FOXE1O00358 373 aaPredicted RBP9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 BET1O15155 118 aa9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 GNSP15586 552 aa9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 HK1P19367 917 aa9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 ZP3P21754 424 aa9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 PCGF2P35227 344 aa9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 CLDN20P56880 219 aa9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 OR1D5P58170 312 aa9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 BTG1P62324 171 aa9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 S100A12P80511 92 aa9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 HTR4Q13639 388 aa9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 METTL11BQ5VVY1 283 aa9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 CD276Q5ZPR3 534 aa9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 RANBP3LQ86VV4 465 aaPredicted RBP9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 GKN2Q86XP6 184 aa9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 KLBQ86Z14 1044 aa9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 SYT14Q8NB59 555 aa9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 SMAP2Q8WU79 429 aaPredicted RBP9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 CHAC2Q8WUX2 184 aa9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 GAL3ST3Q96A11 431 aa9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 SSX3Q99909 188 aa9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 TCEAL7Q9BRU2 100 aa9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 MS4A7Q9GZW8 240 aaPredicted RBP9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 MED20Q9H944 212 aa9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 PELI2Q9HAT8 420 aa9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 SLC7A7Q9UM01 511 aa9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 CHD9Q3L8U1 2897 aa9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 HYKKA2RU49 373 aa9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 C5orf67F2Z3F1 127 aa9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 PEX12O00623 359 aa9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 OIP5O43482 229 aa9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 UBXN7O94888 489 aa9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 PLGP00747 810 aaPredicted RBP9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 MT-ND4P03905 459 aa9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 BSGP35613 385 aa9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 MNDAP41218 407 aa9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 PDX1P52945 283 aa9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 BTG2P78543 158 aa9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 OC90Q02509 493 aaPredicted RBP9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 ZNF91Q05481 1191 aa9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 GPR176Q14439 515 aa9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 ZNF791Q3KP31 576 aaPredicted RBP9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 KRBOX4Q5JUW0 171 aa9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 PODNL1Q6PEZ8 512 aa9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 TMEM65Q6PI78 240 aa9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 IL20RBQ6UXL0 311 aa9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 GPR155Q7Z3F1 870 aa9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 TMED4Q7Z7H5 227 aa9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 COMMD2Q86X83 199 aa9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 SAMD14Q8IZD0 417 aaPredicted RBP9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 OR52R1Q8NGF1 315 aa9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 OR10K1Q8NGX5 313 aa9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 SECISBP2Q96T21 854 aaKnown RBP9.97□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 POT1Q9NUX5 634 aa9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms