RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 LRRC46Q96FV0 321 aa15.32■□□□□ 0.04
COL7A1-210ENST00000487017 FCRL1Q96LA6 429 aa15.32■□□□□ 0.04
COL7A1-210ENST00000487017 NRIP3Q9NQ35 241 aa15.32■□□□□ 0.04
COL7A1-210ENST00000487017 OSGIN1Q9UJX0 560 aa15.32■□□□□ 0.04
COL7A1-210ENST00000487017 A3GALT2U3KPV4 340 aa15.32■□□□□ 0.04
COL7A1-210ENST00000487017 TMEM269A0A1B0GVZ9 245 aa15.32■□□□□ 0.04
COL7A1-210ENST00000487017 HLA-AP01891 365 aaKnown RBP15.32■□□□□ 0.04
COL7A1-210ENST00000487017 OR6V1Q8N148 313 aa15.32■□□□□ 0.04
COL7A1-210ENST00000487017 TSPAN10Q9H1Z9 355 aaPredicted RBP15.32■□□□□ 0.04
COL7A1-210ENST00000487017 RPS10P5Q9NQ39 176 aa15.32■□□□□ 0.04
COL7A1-210ENST00000487017 KLHL13Q9P2N7 655 aa15.32■□□□□ 0.04
COL7A1-210ENST00000487017 OR6C6A6NF89 314 aa15.31■□□□□ 0.04
COL7A1-210ENST00000487017 AGPAT2O15120 278 aa15.31■□□□□ 0.04
COL7A1-210ENST00000487017 TPPPO94811 219 aa15.31■□□□□ 0.04
COL7A1-210ENST00000487017 OR2T7P0C7T2 308 aa15.31■□□□□ 0.04
COL7A1-210ENST00000487017 F3P13726 295 aa15.31■□□□□ 0.04
COL7A1-210ENST00000487017 IDUAP35475 653 aa15.31■□□□□ 0.04
COL7A1-210ENST00000487017 RRAS2P62070 204 aaPredicted RBP15.31■□□□□ 0.04
COL7A1-210ENST00000487017 RBMS2Q15434 407 aaKnown RBP15.31■□□□□ 0.04
COL7A1-210ENST00000487017 SLX4IPQ5VYV7 408 aa15.31■□□□□ 0.04
COL7A1-210ENST00000487017 OR2T27Q8NH04 317 aa15.31■□□□□ 0.04
COL7A1-210ENST00000487017 TCTEX1D2Q8WW35 142 aa15.31■□□□□ 0.04
COL7A1-210ENST00000487017 CDCA3Q99618 268 aaPredicted RBP15.31■□□□□ 0.04
COL7A1-210ENST00000487017 NKX2-4Q9H2Z4 354 aa15.31■□□□□ 0.04
COL7A1-210ENST00000487017 SLC6A14Q9UN76 642 aa15.31■□□□□ 0.04
COL7A1-210ENST00000487017 SLC22A7Q9Y694 548 aa15.31■□□□□ 0.04
COL7A1-210ENST00000487017 SULT2B1O00204 365 aa15.31■□□□□ 0.04
COL7A1-210ENST00000487017 SHOXO15266 292 aa15.31■□□□□ 0.04
COL7A1-210ENST00000487017 SLC43A1O75387 559 aa15.31■□□□□ 0.04
COL7A1-210ENST00000487017 CD53P19397 219 aa15.31■□□□□ 0.04
COL7A1-210ENST00000487017 HTR1FP30939 366 aa15.31■□□□□ 0.04
COL7A1-210ENST00000487017 GDNFP39905 211 aa15.31■□□□□ 0.04
COL7A1-210ENST00000487017 SIRPAP78324 504 aa15.31■□□□□ 0.04
COL7A1-210ENST00000487017 PSPHP78330 225 aa15.31■□□□□ 0.04
COL7A1-210ENST00000487017 GALEQ14376 348 aa15.31■□□□□ 0.04
COL7A1-210ENST00000487017 VASNQ6EMK4 673 aa15.31■□□□□ 0.04
COL7A1-210ENST00000487017 BPIFB2Q8N4F0 458 aa15.31■□□□□ 0.04
COL7A1-210ENST00000487017 SLC2A12Q8TD20 617 aa15.31■□□□□ 0.04
COL7A1-210ENST00000487017 CRB3Q9BUF7 120 aa15.31■□□□□ 0.04
COL7A1-210ENST00000487017 P2RY12Q9H244 342 aa15.31■□□□□ 0.04
COL7A1-210ENST00000487017 BIN3Q9NQY0 253 aa15.31■□□□□ 0.04
COL7A1-210ENST00000487017 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP15.31■□□□□ 0.04
COL7A1-210ENST00000487017 SYT5O00445 386 aa15.31■□□□□ 0.04
COL7A1-210ENST00000487017 KLKB1P03952 638 aa15.31■□□□□ 0.04
COL7A1-210ENST00000487017 MTHFD2P13995 350 aa15.31■□□□□ 0.04
COL7A1-210ENST00000487017 CR2P20023 1033 aa15.31■□□□□ 0.04
COL7A1-210ENST00000487017 APEX1P27695 318 aaKnown RBP15.31■□□□□ 0.04
COL7A1-210ENST00000487017 ETV5P41161 510 aa15.31■□□□□ 0.04
COL7A1-210ENST00000487017 POLR2HP52434 150 aaKnown RBP15.31■□□□□ 0.04
COL7A1-210ENST00000487017 RPS15P62841 145 aaKnown RBP15.31■□□□□ 0.04
COL7A1-210ENST00000487017 OR7E24Q6IFN5 339 aa15.31■□□□□ 0.04
COL7A1-210ENST00000487017 ZNF546Q86UE3 836 aa15.31■□□□□ 0.04
COL7A1-210ENST00000487017 PAQR8Q8TEZ7 354 aa15.31■□□□□ 0.04
COL7A1-210ENST00000487017 PAPOLGQ9BWT3 736 aaKnown RBP15.31■□□□□ 0.04
COL7A1-210ENST00000487017 OR10A5Q9H207 317 aa15.31■□□□□ 0.04
COL7A1-210ENST00000487017 OR10A2Q9H208 303 aa15.31■□□□□ 0.04
COL7A1-210ENST00000487017 ALS2Q96Q42 1657 aa15.31■□□□□ 0.04
COL7A1-210ENST00000487017 SLCO2B1O94956 709 aa15.31■□□□□ 0.04
COL7A1-210ENST00000487017 SHC1P29353 583 aa15.31■□□□□ 0.04
COL7A1-210ENST00000487017 NFATC4Q14934 902 aa15.31■□□□□ 0.04
COL7A1-210ENST00000487017 LACC1Q8IV20 430 aa15.31■□□□□ 0.04
COL7A1-210ENST00000487017 MRPL43Q8N983 215 aaKnown RBP15.31■□□□□ 0.04
COL7A1-210ENST00000487017 OR9A4Q8NGU2 314 aa15.31■□□□□ 0.04
COL7A1-210ENST00000487017 GHSRQ92847 366 aa15.31■□□□□ 0.04
COL7A1-210ENST00000487017 FOXN4Q96NZ1 517 aa15.31■□□□□ 0.04
COL7A1-210ENST00000487017 C11orf54Q9H0W9 315 aaPredicted RBP15.31■□□□□ 0.04
COL7A1-210ENST00000487017 EFCAB7A8K855 629 aa15.3■□□□□ 0.04
COL7A1-210ENST00000487017 PSMB1P20618 241 aaKnown RBP15.3■□□□□ 0.04
COL7A1-210ENST00000487017 KIAA0895LQ68EN5 471 aa15.3■□□□□ 0.04
COL7A1-210ENST00000487017 ABHD4Q8TB40 342 aa15.3■□□□□ 0.04
COL7A1-210ENST00000487017 SLC6A20Q9NP91 592 aa15.3■□□□□ 0.04
COL7A1-210ENST00000487017 SEMA4GQ9NTN9 838 aa15.3■□□□□ 0.04
COL7A1-210ENST00000487017 ZNF225Q9UK10 706 aa15.3■□□□□ 0.04
COL7A1-210ENST00000487017 RPH3AQ9Y2J0 694 aaPredicted RBP15.3■□□□□ 0.04
COL7A1-210ENST00000487017 ACOD1A6NK06 481 aa15.3■□□□□ 0.04
COL7A1-210ENST00000487017 F13BP05160 661 aa15.3■□□□□ 0.04
COL7A1-210ENST00000487017 RAB38P57729 211 aa15.3■□□□□ 0.04
COL7A1-210ENST00000487017 ISL1P61371 349 aa15.3■□□□□ 0.04
COL7A1-210ENST00000487017 RTL6Q6ICC9 239 aa15.3■□□□□ 0.04
COL7A1-210ENST00000487017 ZNF679Q8IYX0 411 aa15.3■□□□□ 0.04
COL7A1-210ENST00000487017 ACBD4Q8NC06 268 aa15.3■□□□□ 0.04
COL7A1-210ENST00000487017 NANOS1Q8WY41 292 aaKnown RBP15.3■□□□□ 0.04
COL7A1-210ENST00000487017 FGF13Q92913 245 aa15.3■□□□□ 0.04
COL7A1-210ENST00000487017 H0YGG7 62 aa15.3■□□□□ 0.04
COL7A1-210ENST00000487017 UBL3O95164 117 aa15.3■□□□□ 0.04
COL7A1-210ENST00000487017 GABRR1P24046 479 aa15.3■□□□□ 0.04
COL7A1-210ENST00000487017 MAOBP27338 520 aa15.3■□□□□ 0.04
COL7A1-210ENST00000487017 SORDQ00796 357 aa15.3■□□□□ 0.04
COL7A1-210ENST00000487017 CAMK2DQ13557 499 aa15.3■□□□□ 0.04
COL7A1-210ENST00000487017 CNN3Q15417 329 aaKnown RBP15.3■□□□□ 0.04
COL7A1-210ENST00000487017 DEFB133Q30KQ1 61 aa15.3■□□□□ 0.04
COL7A1-210ENST00000487017 LINC00299Q6ZSB3 139 aa15.3■□□□□ 0.04
COL7A1-210ENST00000487017 LGALS14Q8TCE9 139 aa15.3■□□□□ 0.04
COL7A1-210ENST00000487017 TBC1D20Q96BZ9 403 aa15.3■□□□□ 0.04
COL7A1-210ENST00000487017 SENP5Q96HI0 755 aaPredicted RBP15.3■□□□□ 0.04
COL7A1-210ENST00000487017 MOKQ9UQ07 419 aa15.3■□□□□ 0.04
COL7A1-210ENST00000487017 SCGB2A1O75556 95 aa15.3■□□□□ 0.04
COL7A1-210ENST00000487017 FUCA1P04066 466 aa15.3■□□□□ 0.04
COL7A1-210ENST00000487017 CA3P07451 260 aa15.3■□□□□ 0.04
COL7A1-210ENST00000487017 OR8G3PP0DMU2 310 aa15.3■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms